BAC Information

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BAC

Clone NameB6Ng01-152K15
Chromosome2 (Build37)
Map Location 76,350,718 - 76,472,386
singlet/doubletdoublet
Overlap geneOsbpl6, Prkra
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
Downstream geneDfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K15.bB6Ng01-152K15.g
ACCDH948184DH948185
length971933
definitionDH948184|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K15, 5' end.DH948185|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,471,417 - 76,472,386)(76,350,718 - 76,351,259)
sequence
gaattcagctttcatacgtgtaaagcctgtatacatcaattttttgaaaa
gtctagtaggaaaaatatgaaggaatggaaaaatattcagtgtattcatg
ccaactaagatattctgtctgttttaagttggtggaagctacactgtttg
gtaactagctgctgttggtgagagtgtgataagcaagcactttggtcggt
gggtatgtaaattagttcagaaatcaacctgcaagcatttgctgcactga
ggtatgtaggagggggcaaggtgcatatgtatggaggtcaaagggtgtca
cttctctcctctttccatatgggtcccagggatcagactcaggaattaga
tttggcatcaaagagccctaacctgctgagccatctctctggctcaagtt
gtaacatttattaaaataaaagcatttctgttggcagtgtctctcctaga
catacataatactggaaataaaaaacaaagctgggtcctccggaaaagca
gccagtgtttttcaccccgacccatctctccatcccccgagcatctgtgt
tcacttaccctggtactgatgttggaactggcccatttcggagctgacgt
ttccctcctctctgccttttagacgaacgtggttggacattccctaggat
gcacttggcactccttgaggaattcccctggtgagaagatcaacctcctg
aaaaggagcctcctcagtctcccgaacacagactacatccagctgcttag
tgagattgccagcgagcaaggctttaacataacgtatttggatataggta
tgctttctcgtgtgccctgacatgtttcttctcaggacctcatgcatctc
atgctgaccttgcctttacctcccaagggctgggtgggattatggggagc
aaacaccacccatgttccacctctgttggagttcatttaattcaagttat
acaccctggttagtggtgtgt
gaattccagtgtgtacagaaggccagctgagacagacacctagcctgtgg
gactgagcaaccactagattcttggactttgtattcacagctagtcattg
ttggattagttggacttcaacctgtaaggagagagagagagagagagaga
gagagagagagagagagattgattcatttcataacttctgtgactctaga
gaacccttactaatgtatcaatgttgtcatgtgtgatggtttgaatatgc
ttgggccagggagtggcactattaggaggtgtggccttgttggactaggt
gtcactgtgggtatggctttaatacccttgtctagctgcctggagtcttc
cactagcagccttcaggtgaagatgtagcactctatgctttgcctgcaca
atgcctgcctggctgctgccatgttcctgcctcgatgatgatggactgaa
tctctgaacctgtaagccagcctcaattaaatattgtccttataagactt
gtcttgtccatggtgtctgttcccagcagtaaaaccctaactaagacatc
atgggtgttagaatttcctttcgctttaaggctaagtaatattccattct
atgaacagcccacactttcttcctctatgcccgtgtcagtggtgtatttg
agatttgtcattttgagattttgtggcactggatgtgagcgtacaatgtg
tgtataaccttcattcttggagggcacttgcctacattttaactattcac
gtggccacagtgcttaaaacatttaaggaatgcccaaactggttgatttc
tacagcagctatgccatttttttttttctgtcagcaggtgcaaggaaacc
gtgagggacttttattacttttatccaccccctccgcaccccctcagctc
cacgtggaaaaacggttgttgtaatgaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76471417_76472386
seq2: B6Ng01-152K15.b_43_1013 (reverse)

seq1  ACACACACACTAAACA-GGTGTATAAACTGAATTAAATGAACATCCACAG  49
      |||||| |||||| || |||||||||  ||||||||||||||  | ||||
seq2  ACACAC-CACTAACCAGGGTGTATAACTTGAATTAAATGAACTCCAACAG  49

seq1  AGGTGGAACAT-GGTGGTGTTTTGCT-CCCATAATCCCACCCAGCCCTTG  97
      ||||||||||| ||||||| |||||| |||||||||||||||||||||||
seq2  AGGTGGAACATGGGTGGTG-TTTGCTCCCCATAATCCCACCCAGCCCTTG  98

seq1  GGAGGTAAAGGCAAGGTCAGCATGAGATGCATGAGGTCCTGAGAAGAAAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAAGGCAAGGTCAGCATGAGATGCATGAGGTCCTGAGAAGAAAC  148

seq1  ATGTCAGGGCACACGAGAAAGCATACCTATATCCAAATACGTTATGTTAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGGCACACGAGAAAGCATACCTATATCCAAATACGTTATGTTAA  198

seq1  AGCCTTGCTCGCTGGCAATCTCACTAAGCAGCTGGATGTAGTCTGTGTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTCGCTGGCAATCTCACTAAGCAGCTGGATGTAGTCTGTGTTC  248

seq1  GGGAGACTGAGGAGGCTCCTTTTCAGGAGGTTGATCTTCTCACCAGGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGAGGAGGCTCCTTTTCAGGAGGTTGATCTTCTCACCAGGGGA  298

seq1  ATTCCTCAAGGAGTGCCAAGTGCATCCTAGGGAATGTCCAACCACGTTCG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAAGGAGTGCCAAGTGCATCCTAGGGAATGTCCAACCACGTTCG  348

seq1  TCTAAAAGGCAGAGAGGAGGGAAACGTCAGCTCCGAAATGGGCCAGTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGGCAGAGAGGAGGGAAACGTCAGCTCCGAAATGGGCCAGTTCC  398

seq1  AACATCAGTACCAGGGTAAGTGAACACAGATGCTCGGGGGATGGAGAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGTACCAGGGTAAGTGAACACAGATGCTCGGGGGATGGAGAGAT  448

seq1  GGGTCGGGGTGAAAAACACTGGCTGCTTTTCCGGAGGACCCAGCTTTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGGGTGAAAAACACTGGCTGCTTTTCCGGAGGACCCAGCTTTGTT  498

seq1  TTTTATTTCCAGTATTATGTATGTCTAGGAGAGACACTGCCAACAGAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCCAGTATTATGTATGTCTAGGAGAGACACTGCCAACAGAAAT  548

seq1  GCTTTTATTTTAATAAATGTTACAACTTGAGCCAGAGAGATGGCTCAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATTTTAATAAATGTTACAACTTGAGCCAGAGAGATGGCTCAGCA  598

seq1  GGTTAGGGCTCTTTGATGCCAAATCTAATTCCTGAGTCTGATCCCTGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGCTCTTTGATGCCAAATCTAATTCCTGAGTCTGATCCCTGGGA  648

seq1  CCCATATGGAAAGAGGAGAGAAGTGACACCCTTTGACCTCCATACATATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGGAAAGAGGAGAGAAGTGACACCCTTTGACCTCCATACATATG  698

seq1  CACCTTGCCCCCTCCTACATACCTCAGTGCAGCAAATGCTTGCAGGTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCCCCCTCCTACATACCTCAGTGCAGCAAATGCTTGCAGGTTGA  748

seq1  TTTCTGAACTAATTTACATACCCACCGACCAAAGTGCTTGCTTATCACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACTAATTTACATACCCACCGACCAAAGTGCTTGCTTATCACAC  798

seq1  TCTCACCAACAGCAGCTAGTTACCAAACAGTGTAGCTTCCACCAACTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCAACAGCAGCTAGTTACCAAACAGTGTAGCTTCCACCAACTTAA  848

seq1  AACAGACAGAATATCTTAGTTGGCATGAATACACTGAATATTTTTCCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGAATATCTTAGTTGGCATGAATACACTGAATATTTTTCCATT  898

seq1  CCTTCATATTTTTCCTACTAGACTTTTCAAAAAATTGATGTATACAGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATATTTTTCCTACTAGACTTTTCAAAAAATTGATGTATACAGGCT  948

seq1  TTACACGTATGAAAGCTGAATTC  970
      |||||||||||||||||||||||
seq2  TTACACGTATGAAAGCTGAATTC  971

seq1: chr2_76350718_76351259
seq2: B6Ng01-152K15.g_458_1001

seq1  TTGCCTGCACAATGCCTGCCTGGCTGCTGCCATGTTCCTGCCTCGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCACAATGCCTGCCTGGCTGCTGCCATGTTCCTGCCTCGATGAT  50

seq1  GATGGACTGAATCTCTGAACCTGTAAGCCAGCCTCAATTAAATATTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTGAATCTCTGAACCTGTAAGCCAGCCTCAATTAAATATTGTCC  100

seq1  TTATAAGACTTGTCTTGGCCATGGTGTCTGTTCCCAGCAGTAAAACCCTA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATAAGACTTGTCTTGTCCATGGTGTCTGTTCCCAGCAGTAAAACCCTA  150

seq1  ACTAAGACATCATGGGTGTTAGAATTTCCTTTCGCTTTAAGGCTAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACATCATGGGTGTTAGAATTTCCTTTCGCTTTAAGGCTAAGTAA  200

seq1  TATTCCATTCTATGAACAGCCCACACTTTCTTCCTCTATGCCCGTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTCTATGAACAGCCCACACTTTCTTCCTCTATGCCCGTGTCAG  250

seq1  TGG-GTA-TTGAGATTGTTCATTTTGAGA-TTTGTGGCACTGGATGTGAG  297
      ||| ||| ||||||||  ||||||||||| ||||||||||||||||||||
seq2  TGGTGTATTTGAGATTTGTCATTTTGAGATTTTGTGGCACTGGATGTGAG  300

seq1  CGTACAATGTGTGTTATAGCCTTCAGTTCTTGGAGGGCACTTGCCTACAA  347
      ||||||||||||| |||| |||||| |||||||||||||||||||||| |
seq2  CGTACAATGTGTG-TATAACCTTCA-TTCTTGGAGGGCACTTGCCTAC-A  347

seq1  ATCAAACTATTCACGTGGCAACAGTGCTTAGAAACATTTAAGGAATGCCC  397
       |  ||||||||||||||| |||||||||| |||||||||||||||||||
seq2  TTTTAACTATTCACGTGGCCACAGTGCTTA-AAACATTTAAGGAATGCCC  396

seq1  AAACTGTTTGATTTCTACAGCAGCTATGCCA--TTTTTATTTCTGTCAGC  445
      |||||| ||||||||||||||||||||||||  ||||| |||||||||||
seq2  AAACTGGTTGATTTCTACAGCAGCTATGCCATTTTTTTTTTTCTGTCAGC  446

seq1  AGGGTGCAAGGGATACTTGAGGGACATTTTTTAC-TTTAGTCAGCCCCTC  494
      | ||||||||| |  | |||||||| ||| |||| ||||  || ||||||
seq2  A-GGTGCAAGGAAACCGTGAGGGACTTTTATTACTTTTATCCACCCCCTC  495

seq1  AGCA-CCCCTCAGCTCCACGTGG-AGAACGGTTGTTGTGATGGAAAATTT  542
       ||| |||||||||||||||||| | |||||||||||| || ||||||||
seq2  CGCACCCCCTCAGCTCCACGTGGAAAAACGGTTGTTGTAAT-GAAAATTT  544