BAC Information

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BAC

Clone NameB6Ng01-153M10
Chromosome2 (Build37)
Map Location 131,130,259 - 131,286,330
singlet/doubletdoublet
Overlap geneRnf24, LOC100043463
Upstream geneEbf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2
Downstream geneSmox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M10.bB6Ng01-153M10.g
ACCDH948992DH948993
length1,045936
definitionDH948992|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M10, 5' end.DH948993|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,130,259 - 131,131,302)(131,285,392 - 131,286,330)
sequence
gaattcaaggaaagcgtgtgctacaaatgagatctcacaaagaaccaatc
cctgagaacgctgagacttcatgtaagggttaatcctcactatcaatcac
ggggcgctcagccgctgcggctgtgagggtgttccgcagagctgtaactg
aggagtgacacacctcaatgtgggctaggtgtcccaactgaatcaagaga
ggggagcagcaggaaaaccccgacgatgagcagctgtgctgatgtctgct
tcctatggaagggcagtgagcagctcatcacctagggctgtggctaggcc
tggctcactcatcacctagggctgtggctaggcctggctcactcatctcc
tagggctgtggctaggcctggctcactcatctcctagggctgtggctagg
cctggctcactcatcacctagggctgtggctaggcctggctcactcatca
cctagggctgtggctaggcctggctcactcatcacctagggctgtggcta
ggcctgggtcactcatcacctagggctgtggctaggcctggctcactcat
cacctagggctgtggctaggcctggctcactcatcacctagggctgtggc
taggcctggctcactcatcacctagggctgtggctaggcctggctcactc
atcacctagggctgtggctaggcctggctcactcatcacctagggctgtg
gctaggcctgggtcactcatcacctagggctgtggctaggcctggctcac
tcatcacctagggctgtggctaggcctggctcactcatcacctagggctg
tggctaggcctggctcactcatcacctagggctgtggctaagcctggctc
actgccagtgcttcttcactgtgatgaacagacacccagaatgggagcca
caacaaacctctcttttgtcagttgctatccagtgtcttgtcacagtggc
aggaggactaattataatacaccatgtggccttatgggattgtcacagtc
actcaaaaagcagggagaaggggaggaggaaaaatcccacttttt
gaattcacagcttttatatctcttcttagaaaagagacatctgaagaata
aaaggagaaggaagagaagaagaaaagataaagacaaaaaagaaaaccca
caacaacaacaacaaaaacaaatcagagtatgacaaaaacaaacagaaga
aagagccaaagaaaaagcttgagatgatatagtgagagagtaatataaac
cccatttgtcaccatgttgaagaccaggcctgatttcaaaaaagtctgta
gggcaccggcttcaggaataggccataagtcccagaaaccagatcataag
acaccagcagtaggaacagaccgtaaaacccagaacaatatcataaaact
ccttcccaaagaagacctagggataaccacaaaaatggggaaatatctta
tctcagaatgggccatctttgctggacagcattatttcatcacatgatta
aatgctcatgacgtaaaagtgcagacgactgatcacctgtgaccccctag
cacccaccaatgaaattttagattactcaatccttctagagagttcccct
ggttccctataagaaggcctgcatgccttttgtctgaggttgccatttaa
agaatggttgacccctgtatgctttattgtttctgcagaataaacaccct
gtttttgcatactatctgagtctgggggtcttcagcaatttttagacttt
ttacaatagatgcagagactcatacacataaatcccataaaaacacaaaa
ctgggaggcatatatgcaaagggactgtggggtaaaatttttaatggaaa
taagtaaaaaaaaaaaaaataataataacatggtcctaccaaacattata
agaccaagaactccaaaaatcctgtgactttgttctgttggccgcctctt
gctggggtggagcccggtcctccggtggttgaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131130259_131131302
seq2: B6Ng01-153M10.b_49_1093

seq1  GAATTCAAGGAAAGCGTGTGCTACAAATGAGATCTCACAAAGAACCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAAGCGTGTGCTACAAATGAGATCTCACAAAGAACCAATC  50

seq1  CCTGAGAACGCTGAGACTTCATGTAAGGGTTAATCCTCACTATCAATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACGCTGAGACTTCATGTAAGGGTTAATCCTCACTATCAATCAC  100

seq1  GGGGCGCTCAGCCGCTGCGGCTGTGAGGGTGTTCCGCAGAGCTGTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGCTCAGCCGCTGCGGCTGTGAGGGTGTTCCGCAGAGCTGTAACTG  150

seq1  AGGAGTGACACACCTCAATGTGGGCTAGGTGTCCCAACTGAATCAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGACACACCTCAATGTGGGCTAGGTGTCCCAACTGAATCAAGAGA  200

seq1  GGGGAGCAGCAGGAAAACCCCGACGATGAGCAGCTGTGCTGATGTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAGCAGGAAAACCCCGACGATGAGCAGCTGTGCTGATGTCTGCT  250

seq1  TCCTATGGAAGGGCAGTGAGCAGCTCATCACCTAGGGCTGTGGCTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGAAGGGCAGTGAGCAGCTCATCACCTAGGGCTGTGGCTAGGCC  300

seq1  TGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCTCC  350

seq1  TAGGGCTGTGGCTAGGCCTGGCTCACTCATCTCCTAGGGCTGTGGCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGTGGCTAGGCCTGGCTCACTCATCTCCTAGGGCTGTGGCTAGG  400

seq1  CCTGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCA  450

seq1  CCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTA  500

seq1  GGCCTGGGTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCAT  550

seq1  CACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGC  600

seq1  TAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTC  650

seq1  ATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTG  700

seq1  GCTAGGCCTGGGTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCCTGGGTCACTCATCACCTAGGGCTGTGGCTAGGCCTGGCTCAC  750

seq1  TCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCTAGGGCTGTGGCTAGGCCTGGCTCACTCATCACCTAGGGCTG  800

seq1  TGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTAAGCCTGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGCCTGGCTCACTCATCACCTAGGGCTGTGGCTAAGCCTGGCTC  850

seq1  ACTGCCAGTGCTTCTTCACTGTGATGAACAGACACCCAGAATGGGAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGTGCTTCTTCACTGTGATGAACAGACACCCAGAATGGGAGCCA  900

seq1  CAACAAACCTCTCTTTTGTCAGTTGCTATCCAGTGTCTTGTCACAGTGCC  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACAAACCTCTCTTTTGTCAGTTGCTATCCAGTGTCTTGTCACAGTGGC  950

seq1  AGGAGGACTAATTAATAATACACCATGT-GCCTTATGGTATTGTCACAGT  999
      ||||||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  AGGAGGACTAATT-ATAATACACCATGTGGCCTTATGGGATTGTCACAGT  999

seq1  CACTAGAGATGCAGGGAG-AGGGGAGGAGGAAGATACCCACTTTTT  1044
      ||||  | | |||||||| ||||||||||||| |  ||||||||||
seq2  CACTCAAAAAGCAGGGAGAAGGGGAGGAGGAAAAATCCCACTTTTT  1045

seq1: chr2_131285392_131286330
seq2: B6Ng01-153M10.g_71_1006 (reverse)

seq1  GTATTCAACCACACAGAAGAACAGGCTCCACACCCAGCAAGAGACGGCCA  50
      || ||||||||| | || || | |||||||| ||||||||||| ||||||
seq2  GTTTTCAACCAC-CGGAGGACCGGGCTCCAC-CCCAGCAAGAGGCGGCCA  48

seq1  ACAGAAACAAAGTCAACGGACTCTTTGGAGGTTCTTGGTCTCATAATGTT  100
      |||| ||||||||||  ||| | |||||| ||||||||||| ||||||||
seq2  ACAG-AACAAAGTCACAGGA-TTTTTGGA-GTTCTTGGTCTTATAATGTT  95

seq1  TAGTTAGGACATTGTTATTTATTATTTTTTTTTTTTTTACTTATTTTCAT  150
      | | ||||||  ||||| |||||||||||||||||||||||||||| |||
seq2  T-GGTAGGACCATGTTA-TTATTATTTTTTTTTTTTTTACTTATTTCCAT  143

seq1  TTAAAATTTTTACCCACAGGTCCTTTGCATATATGGCTTCCAGTTTTGTG  200
      | ||||||||  |||||||  |||||||||||||| || |||||||||||
seq2  TAAAAATTTTACCCCACAGTCCCTTTGCATATATGCCTCCCAGTTTTGTG  193

seq1  TTTTTATGGGATTTATGTGTATGAGTCTCTGCATCTATTGT-AAAAGTCT  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTTATGGGATTTATGTGTATGAGTCTCTGCATCTATTGTAAAAAGTCT  243

seq1  AAAAATTGCTGAAGA-CCCCAGACTCAGATAGTATGCAAAAACAGGGTGT  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAATTGCTGAAGACCCCCAGACTCAGATAGTATGCAAAAACAGGGTGT  293

seq1  TTATTCTGCAGAAACAAT-AAGCATACAGGGGTCAACCATTCTTTAAATG  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTATTCTGCAGAAACAATAAAGCATACAGGGGTCAACCATTCTTTAAATG  343

seq1  GCAACCTCAGAC-AAAGGCATGCAGGCCTTCTTATAGGGAACCAGGGGAA  396
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAACCTCAGACAAAAGGCATGCAGGCCTTCTTATAGGGAACCAGGGGAA  393

seq1  CTCTCTAGAAGGATTGAGTAATCTAAAATTTCATTGGTGGGTGCTAGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAAGGATTGAGTAATCTAAAATTTCATTGGTGGGTGCTAGGGG  443

seq1  GTCACAGGTGATCAGTCGTCTGCACTTTTACGTCATGAGCATTTAATCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTGATCAGTCGTCTGCACTTTTACGTCATGAGCATTTAATCAT  493

seq1  GTGATGAAATAATGCTGTCCAGCAAAGATGGCCCATTCTGAGATAAGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAATAATGCTGTCCAGCAAAGATGGCCCATTCTGAGATAAGATA  543

seq1  TTTCCCCATTTTTGTGGTTATCCCTAGGTCTTCTTTGGGAAGGAGTTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATTTTTGTGGTTATCCCTAGGTCTTCTTTGGGAAGGAGTTTTA  593

seq1  TGATATTGTTCTGGGTTTTACGGTCTGTTCCTACTGCTGGTGTCTTATGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGTTCTGGGTTTTACGGTCTGTTCCTACTGCTGGTGTCTTATGA  643

seq1  TCTGGTTTCTGGGACTTATGGCCTATTCCTGAAGCCGGTGCCCTACAGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTGGGACTTATGGCCTATTCCTGAAGCCGGTGCCCTACAGAC  693

seq1  TTTTTTGAAATCAGGCCTGGTCTTCAACATGGTGACAAATGGGGTTTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAATCAGGCCTGGTCTTCAACATGGTGACAAATGGGGTTTATA  743

seq1  TTACTCTCTCACTATATCATCTCAAGCTTTTTCTTTGGCTCTTTCTTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTCACTATATCATCTCAAGCTTTTTCTTTGGCTCTTTCTTCTG  793

seq1  TTTGTTTTTGTCATACTCTGATTTGTTTTTGTTGTTGTTGTTGTGGGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTCATACTCTGATTTGTTTTTGTTGTTGTTGTTGTGGGTTT  843

seq1  TCTTTTTTGTCTTTATCTTTTCTTCTTCTCTTCCTTCTCCTTTTATTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGTCTTTATCTTTTCTTCTTCTCTTCCTTCTCCTTTTATTCTT  893

seq1  CAGATGTCTCTTTTCTAAGAAGAGATATAAAAGCTGTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCTCTTTTCTAAGAAGAGATATAAAAGCTGTGAATTC  936