BAC Information

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BAC

Clone NameB6Ng01-154B21
Chromosome2 (Build37)
Map Location 96,208,044 - 96,324,220
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B21.bB6Ng01-154B21.g
ACCDH949249DH949250
length9181,049
definitionDH949249|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B21, 5' end.DH949250|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,323,269 - 96,324,220)(96,208,044 - 96,209,095)
sequence
gaattcagctgcaacaaatggaaattgcctaccagaaatatgttcatgtt
gttcttaagggtcaagtctgacaacagggataactatgcacaagattcag
tactgccttcaggcttggagggaatatctgcccttctgcctattcatttt
tactctgttgaatttcatcgtcctcacctcctcaaatcttgaataacatg
gtgctagatctccagtcttcaagttctaagtacttacggagttaagaggg
aaagagcatgattctcctcacacagcttttgttataacctcaatgttgtt
gctttcaagggacttgcatatcaaaatggtcagaaactatcatgtaagca
tggtagacaggcaaagcaaggaagtgtcttttaaaaaaagaaggataaga
aaaaaaaaaaggaaaacctgctcacaatcatcacttttgacctaaacaaa
attgttatattgataagaaacaaataggaataagtattacatggcaatca
gtattagccacactacaaatgaattcaaatatttttaatccctatttgaa
tatataacctgaataataagatactcaaataaaggagaatgaaaccaaca
gtctctttcttcttgttcttctcttgttcctcttattctttttgttcttc
ttgtacttcttgttctttttgttcttactcttcttgttcttgttcgtctt
gttcttgttcttcttgttcctgttcttgttcctgttcttgttcttgctcg
tgttgttgttgttgttgttgttgttgttgttgttgttgttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcatcttcatcttcttcttctcttcttttctttttctcctctcctcct
cctctcctcctccccctc
gaattcctctttttcctcttcctatagcatctaaatcttactagcatttc
caaccccatttttttatgaataagtataggatagctttcctccttttatt
ccttaaatcacactgacacctataacatttagacacagatataatttata
aaataattttaaaagtttattagtgatatatatatatattatatatatat
gaacatatattacttaacactatgctattactgaatactcagtgcacaca
agtaaaccaaaatagatgcatttaatcaatagataggaatatcagactac
acatacattaatttagatggattctgttcaaccatagaagtaaaaatcct
taacatgccttcaactctgatttttttttaattttctttcttccctaggg
gtgttgcatttgttggtgtggagctgattctcagttaatggattataatt
gatcatggctttatagagtgtgcaagaatttttatctttgcttgatgaca
gttagccaattaaatgaatcattccttggatgagtaatgaaaggaactat
ttcctttgaatgttaaatccttccattttattatatagaacttattgtcc
ataccgctgtcacatagtactgcaatctttttgtacctttatttatcctc
ttagaaacatgtttggacaatgttcctttcttttcattcataagttttta
atgtggtgtgctatttgatgatgtgaattgaattattggttgaatcatga
ataaatgaaatagttctattcacaatgaaaaagtctcttagttttctagc
agcagcatgcactgagttagaaaaaccaatgcattccctcaggaacaatg
aaatgtatcagaaagtatatattctggtggtacaagtgagaaggctctct
ggttaagaatattttctgttcttgcagtagaccagagtttgattcccaga
ttcccagaaccatgtgggtaccttacaaccacatgtactctattttgaga
ggatttagagccctcttctagtctaccaggaaagtgacttgctctgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96323269_96324220
seq2: B6Ng01-154B21.b_42_959 (reverse)

seq1  GAGGGGGAGGAGGAGGGCAGGAAGGAGAAGGAGGGGGAGGAGGAGGAGGA  50
                                    |||||||||||||| |||||
seq2  ------------------------------GAGGGGGAGGAGGA-GAGGA  19

seq1  GGAGGAGAAGGAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGA  100
      ||||||| ||||||||||| |||||||| |||||||||||| ||||| ||
seq2  GGAGGAG-AGGAGAAAAAG-AAAAGAAG-AGAAGAAGAAGATGAAGATGA  66

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  116

seq1  AAGAAGAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAACAACAACAACAACAACAACAACAACAACAACAACAA  166

seq1  CACGAGCAAGAACAAGAACAGGAACAAGAACAGGAACAAGAAGAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCAAGAACAAGAACAGGAACAAGAACAGGAACAAGAAGAACAAGA  216

seq1  ACAAGACGAACAAGAACAAGAAGAGTAAGAACAAAAAGAACAAGAAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACGAACAAGAACAAGAAGAGTAAGAACAAAAAGAACAAGAAGTAC  266

seq1  AAGAAGAACAAAAAGAATAAGAGGAACAAGAGAAGAACAAGAAGAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACAAAAAGAATAAGAGGAACAAGAGAAGAACAAGAAGAAAGAG  316

seq1  ACTGTTGGTTTCATTCTCCTTTATTTGAGTATCTTATTATTCAGGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGTTTCATTCTCCTTTATTTGAGTATCTTATTATTCAGGTTATA  366

seq1  TATTCAAATAGGGATTAAAAATATTTGAATTCATTTGTAGTGTGGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATAGGGATTAAAAATATTTGAATTCATTTGTAGTGTGGCTAAT  416

seq1  ACTGATTGCCATGTAATACTTATTCCTATTTGTTTCTTATCAATATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGCCATGTAATACTTATTCCTATTTGTTTCTTATCAATATAACA  466

seq1  ATTTTGTTTAGGTCAAAAGTGATGATTGTGAGCAGGTTTTCCTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTAGGTCAAAAGTGATGATTGTGAGCAGGTTTTCCTTTTTTTT  516

seq1  TTTCTTATCCTTCTTTTTTTAAAAGACACTTCCTTGCTTTGCCTGTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCCTTCTTTTTTTAAAAGACACTTCCTTGCTTTGCCTGTCTAC  566

seq1  CATGCTTACATGATAGTTTCTGACCATTTTGATATGCAAGTCCCTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTACATGATAGTTTCTGACCATTTTGATATGCAAGTCCCTTGAAA  616

seq1  GCAACAACATTGAGGTTATAACAAAAGCTGTGTGAGGAGAATCATGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACATTGAGGTTATAACAAAAGCTGTGTGAGGAGAATCATGCTCT  666

seq1  TTCCCTCTTAACTCCGTAAGTACTTAGAACTTGAAGACTGGAGATCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTAACTCCGTAAGTACTTAGAACTTGAAGACTGGAGATCTAGC  716

seq1  ACCATGTTATTCAAGATTTGAGGAGGTGAGGACGATGAAATTCAACAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTCAAGATTTGAGGAGGTGAGGACGATGAAATTCAACAGAG  766

seq1  TAAAAATGAATAGGCAGAAGGGCAGATATTCCCTCCAAGCCTGAAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAATAGGCAGAAGGGCAGATATTCCCTCCAAGCCTGAAGGCAG  816

seq1  TACTGAATCTTGTGCATAGTTATCCCTGTTGTCAGACTTGACCCTTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATCTTGTGCATAGTTATCCCTGTTGTCAGACTTGACCCTTAAGA  866

seq1  ACAACATGAACATATTTCTGGTAGGCAATTTCCATTTGTTGCAGCTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGAACATATTTCTGGTAGGCAATTTCCATTTGTTGCAGCTGAAT  916

seq1  TC  952
      ||
seq2  TC  918

seq1: chr2_96208044_96209095
seq2: B6Ng01-154B21.g_64_1112

seq1  GAATTCCTCTTTTTCCTCTTCCTATAGCATCTAAATCTTACTAGCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTTTCCTCTTCCTATAGCATCTAAATCTTACTAGCATTTC  50

seq1  CAACCCCATTTTTTTATGAATAAGTATAGGATAGCTTTCCTCCTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCATTTTTTTATGAATAAGTATAGGATAGCTTTCCTCCTTTTATT  100

seq1  CCTTAAATCACACTGACACCTATAACATTTAGACACAGATATAATTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATCACACTGACACCTATAACATTTAGACACAGATATAATTTATA  150

seq1  AAATAATTTTAAAAGTTTATTAGTGATATATATATATATTATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTAAAAGTTTATTAGTGATATATATATATATTATATATATAT  200

seq1  GAACATATATTACTTAACACTATGCTATTACTGAATACTCAGTGCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATATTACTTAACACTATGCTATTACTGAATACTCAGTGCACACA  250

seq1  AGTAAACCAAAATAGATGCATTTAATCAATAGATAGGAATATCAGACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCAAAATAGATGCATTTAATCAATAGATAGGAATATCAGACTAC  300

seq1  ACATACATTAATTTAGATGGATTCTGTTCAACCATAGAAGTAAAAATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTAATTTAGATGGATTCTGTTCAACCATAGAAGTAAAAATCCT  350

seq1  TAACATGCCTTCAACTCTGATTTTTTTTTAATTTTCTTTCTTCCCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCCTTCAACTCTGATTTTTTTTTAATTTTCTTTCTTCCCTAGGG  400

seq1  GTGTTGCATTTGTTGGTGTGGAGCTGATTCTCAGTTAATGGATTATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCATTTGTTGGTGTGGAGCTGATTCTCAGTTAATGGATTATAATT  450

seq1  GATCATGGCTTTATAGAGTGTGCAAGAATTTTTATCTTTGCTTGATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGCTTTATAGAGTGTGCAAGAATTTTTATCTTTGCTTGATGACA  500

seq1  GTTAGCCAATTAAATGAATCATTCCTTGGATGAGTAATGAAAGGAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCAATTAAATGAATCATTCCTTGGATGAGTAATGAAAGGAACTAT  550

seq1  TTCCTTTGAATGTTAAATCCTTCCATTTTATTATATAGAACTTATTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAATGTTAAATCCTTCCATTTTATTATATAGAACTTATTGTCC  600

seq1  ATACCGCTGTCACATAGTACTGCAATCTTTTTGTACCTTTATTTATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGCTGTCACATAGTACTGCAATCTTTTTGTACCTTTATTTATCCTC  650

seq1  TTAGAAACATGTTTGGACAATGTTCCTTTCTTTTCATTCATAAGTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACATGTTTGGACAATGTTCCTTTCTTTTCATTCATAAGTTTTTA  700

seq1  ATGTGGTGTGCTATTTGATGATGTGAATTGAATTATTGGTTGAATCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTGCTATTTGATGATGTGAATTGAATTATTGGTTGAATCATGA  750

seq1  ATAAATGAAATAGTTCTATTCACAATGAAAAAGTCTCTTAGTTTTCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAATAGTTCTATTCACAATGAAAAAGTCTCTTAGTTTTCTAGC  800

seq1  AGCAGCATGCACTGAGTTAGAAAAACCAATGCATTCCCTCAGGAACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGCACTGAGTTAGAAAAACCAATGCATTCCCTCAGGAACAATG  850

seq1  AAATGTATCAGAAAGTATATATTCTGGTGGTACAAGTGAGAAGGCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATCAGAAAGTATATATTCTGGTGGTACAAGTGAGAAGGCTCTCT  900

seq1  GGTTAAGAATATTTTCTGTTCTTGCAGTAGACCAGAGTTTGATTCCCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAATATTTTCTGTTCTTGCAGTAGACCAGAGTTTGATTCCCAGA  950

seq1  TTCCCAGAACCATGTTGGGTACCTTACAACCACATGTAACTCTATTTTGA  1000
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TTCCCAGAACCATG-TGGGTACCTTACAACCACATGT-ACTCTATTTTGA  998

seq1  GAGGATTTAGAGCCCTCTTCTAGTCTACCAAGAAAGTGACTTGCTTCTGA  1050
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GAGGATTTAGAGCCCTCTTCTAGTCTACCAGGAAAGTGACTTGC-TCTGA  1047

seq1  AC  1052
      ||
seq2  AC  1049