BAC Information

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BAC

Clone NameB6Ng01-154C01
Chromosome9 (Build37)2 (Build37)
Map Location 27,527,140 - 27,527,651173,771,116 - 173,771,332
singlet/doubletsingletsinglet
Overlap geneLOC100041202
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440
Downstream geneOpcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C01.bB6Ng01-154C01.g
ACCDH949257DH949258
length1,034228
definitionDH949257|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C01, 5' end.DH949258|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,527,140 - 27,527,651)(173,771,116 - 173,771,332)
sequence
gaattctcaaagaagtttcaatttgcatctccctgatggcaagggatacc
ggacactcttaaagatagcttttgggcgttttttgtttgtttgtctgttt
gatttgtaagctgtttattcagtctattggcccatttgtcaatggttggt
tttatttctttgttacctaatttctgaagtatccccgtgactgatgtata
actggtacatattttcttacattccgtgggccatgggctctgatgattgt
cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagt
tgggaaggaaagggtttattcagcttacacttccatactgcggatcatca
cataaggaagtcaggactggaactcaagcaggtcagaaagcaggagctga
tgtagaggccatggaggaatgttctttactggctagcttcccctggcttg
ttcagcctgttctcttatagaactcaagactaccagcccagatatggtcc
cacacacaaggggcctttcccccttgatcactaattgagaaaatgcctta
caattggatctcatggaggcatatccccaactgaagctcctttctctgtg
ataactccagctgtgtcaagctgacacaaaactagccagtacaatgatat
ttttgtttgtttgtttgtttgtttgtttgttgtttgtggggtgcagactc
ttcgaatgctcctgcaatccaatctgctgctgttggggctgcttcctgtg
ctgttgctgccctgctaagaaagttcttatctaccccaaggtcttgaaga
ggattctctgttttcttgaaggagtcccagggttccaggtctaagttaag
ctgttggtctgttttgaatttgatttttgtccaaagtgaatactgaatgg
aatttccctcttctacctgtagataccaattttccagaaccatttgtaaa
tggactgtttgtttctttgtttttgccttctttgtcaaagaaagaaaaga
aatttaaagtgtgcatgattttgtatttgtgatt
ttgttgaaaatgggtggtttttgaagacagtgcctcatagcggccaatct
gggaaaggctgggaggctgggatttagaaacaagttcacatggtctcaga
aaatggctcatccagacaggccagcctgaacctgtttggctgtggatgtc
cactaggtcaggtaagccagggtgtgtgtgtatgtgtgtgtggacacata
ctcacactcattttttttacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27527140_27527651
seq2: B6Ng01-154C01.b_121_516 (reverse)

seq1  GTTCTATAAGAGAGCAGGCTGAGCAAGCCAGAGGAGGCAAGCCAGTAAAG  50
      ||||||||||||| |||||||| |||||||| ||| || |||||||||||
seq2  GTTCTATAAGAGAACAGGCTGAACAAGCCAGGGGAAGCTAGCCAGTAAAG  50

seq1  AACATCCCTCCATGGCCTCTGCATCAGCTCC-------------------  81
      ||||| |||||||||||||| ||||||||||                   
seq2  AACATTCCTCCATGGCCTCTACATCAGCTCCTGCTTTCTGACCTGCTTGA  100

seq1  -TTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGCATGGAAATATAAG  130
       |||||||||||||||||||  ||||||| | |||| |||||| | ||||
seq2  GTTCCAGTCCTGACTTCCTTATGTGATGATCCGCAGTATGGAAGTGTAAG  150

seq1  CTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGCTTGTG  180
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTGAATAAACCCTTTCCTTCCCAACTTGCTTCTTGGTCATGATGTTTGTG  200

seq1  CAGGAATAGAAACCCTGACTAAGA-------CAGACCACATCACCTAATG  223
      ||||||||||||||||||||||||       |||| | |||  || |  |
seq2  CAGGAATAGAAACCCTGACTAAGACAATCATCAGAGCCCATGGCCCACGG  250

seq1  AATAATAAAGCATAAATATTAAATAATAATTCATAAATAATAGTTCTTCT  273
      |||   | |    ||||||  |  | | || ||| | | |  |   | ||
seq2  AATGTAAGA----AAATATGTACCAGTTATACATCAGTCACGGGGATACT  296

seq1  TTATTAATTACTTGCTAAGTGACAGGGTCTTCTATGAGGATCCCCCCTTT  323
      | |  ||||                           |||           
seq2  TCAGAAATT---------------------------AGG-----------  308

seq1  TTTAACTAACCTTTAAACATCTGTAATCTGAGCTATGGCTATGAACACCT  373
        |||| ||             | |||                || ||| 
seq2  --TAACAAA-------------GAAAT----------------AAAACC-  326

seq1  GTAACCTCAGTGTTTGGGACGTGAAGGCTGAAGATGAGTGACTGCA-AGA  422
        ||||       |||  |  ||  |||  || |     ||||| | | |
seq2  --AACC------ATTGACAAATG--GGC-CAATA-----GACTGAATAAA  360

seq1  CTTCTTAGGACTAGTGCATTTGATATCTATCTGGGATTCGTTGTGAGACT  472
      |  ||||                                           
seq2  CAGCTTA-------------------------------------------  367

seq1  CTTCTTCTCAAAACCAAAACAAGTCAAACAAACAAAAAAC  512
              |||| |  |||| || ||||||||||||||||
seq2  --------CAAATC--AAAC-AGACAAACAAACAAAAAAC  396

seq1: chr2_173771116_173771332
seq2: B6Ng01-154C01.g_72_299

seq1  TTGTTGAAAATGGGTGGTTTTTGAAGACAGTGCCTCATAGCGGCCAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAATGGGTGGTTTTTGAAGACAGTGCCTCATAGCGGCCAATCT  50

seq1  GGGAAAGGCTGGGAGGCTGGGATTTAGAAACAAGTTCACATGGTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGCTGGGAGGCTGGGATTTAGAAACAAGTTCACATGGTCTCAGA  100

seq1  AAATGGCTCATCCAGACAGGCCAGCCTGAACCTGTTTGGCTGTGGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTCATCCAGACAGGCCAGCCTGAACCTGTTTGGCTGTGGATGTC  150

seq1  CACTAGGTCAGGTAAGCCAGGGTGTGTGTGTATGTGTGTGTGGACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTCAGGTAAGCCAGGGTGTGTGTGTATGTGTGTGTGGACACATA  200

seq1  CACACAC-----------ACACACACAC  217
      | |||||           ||||||||||
seq2  CTCACACTCATTTTTTTTACACACACAC  228