BAC Information

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BAC

Clone NameB6Ng01-154G21
Chromosome2 (Build37)
Map Location 59,484,278 - 59,662,842
singlet/doubletdoublet
Overlap geneLOC100039016, Tanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154G21.bB6Ng01-154G21.g
ACCDH949476DH949477
length7571,095
definitionDH949476|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G21, 5' end.DH949477|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,484,278 - 59,485,031)(59,661,742 - 59,662,842)
sequence
gaattccagggctctggcatctctgggctgcacacaccttctctctgagg
tcttttttttttttttttttttttttttggcttgggacagttgagaagct
gagtcctgatctggtccccaaccttgtgaccagtaaagagcaccgtaaaa
taaggaaatcgaaggctaggggactgaggtgtggatgactgtgtggtctg
ggtgcaaagagcagaacacactctagggccaccaaagagccaggacttgt
gggaagcacaagcttggaatgacactgttgcctgtgcagtatgcctggta
gtggagcatagtggtaggggagctggggtgggcatggtgtggtgaatggc
agccgctgtgacttcgtgggttggacacagcagtaagtgctttcgagtgt
cggctaggtcaacagcaccccgaatggtttatccccatctacatagaggc
ccagccaggggacaaaactgctccaggttacatggtgagtccaaaaatgg
agttgggatggtaatccagattgtcccctgtgctcttgttccttgcagga
gctgactgttgggcacagaggaaggacaggagagagagctgagacataag
gaccactgtaccgcgtttcttccttccatgaatgagaagataccagagat
aggtgggtgtcagcttcccgttcggttgaagggtgatgtgactgtgctgt
gcgtaggaaagcactgaaaggaacaacagtttttcacgtgttggtctgag
gtaaagc
gaattcctgggctcgggaagcccacagtgtgtacaccacagctgatcctg
atgaaacagctcgacagtctgtggaaacagtctctgcagaccaggcagat
gggagccatggtggagaagtccttgctctcagagagcaggctgcaaagtg
agaaccctatttccatctaaacagaagcagggtgcagactcaggctggac
cgaagcctggtgctgggaacatggtctgtcagttcccacagcatcgtatt
aggtcgccagtgaagtgtccctggttgtctcggcttgggttgatccacat
caaacactgatgtggaaacagtaactcaattcagttgggactctgtggga
gccggggctgactcgtcatggctgtggaatgctgaggcagataatccagg
catctgatgggctcccgccatgtttcaggctgcccagaactgtgggatga
tcctcatctgacagtctgtgggtggtacagtggtggcctcactggcggtg
ccatttctgctaacaggtcgggactcactctcctctgaagacgaggagag
gagagaaaggaagaggagacaaggaaggaggcgtggggaaaggaaggcag
tggctcagtgctattgcaaccacagaactaactcactttgaagggcttgt
ctctaaacaccgcccagacaagcagcagcagcagctctgtgaaaaggaag
ggtttctaagtaaagccctctgctccccaaatcagcaggtacttaggagt
tttctaaaacatgtgggttcatcccagtgctcagactaaacacggtttta
gatgaaagtctctggaacctgcaataaagctcttgctcttctgagccagc
tcttcctgatgacacatgaggacacatcagttcaagcactaaagatcatc
catgcctcctcctctcggctaccctccccatcagtctctccctgcctttc
tggtgagaagcggggtcccttcagacatcctcctgctttcaatcagtaag
agtcatgatgtccaagacgtgatgctgtgaagcgggtgacagaccctgca
tgggtctgtcccgccacatggaggaagtactatgtgcaggagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59484278_59485031
seq2: B6Ng01-154G21.b_46_802

seq1  GAATTCCAGGGCTCTGGCATCTCTGGGCTGCACACACCTTCTCTCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTCTGGCATCTCTGGGCTGCACACACCTTCTCTCTGAGG  50

seq1  TCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTTGGGACAGTTGAGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTTGGGACAGTTGAGAAGCT  100

seq1  GAGTCCTGATCTGGTCCCCAACCTTGTGACCAGTAAAGAGCACCGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTCCTGATCTGGTCCCCAACCTTGTGACCAGTAAAGAGCACCGTAAAA  150

seq1  TAAGGAAATCGAAGGCTAGGGGACTGAGGTGTGGATGACTGTGTGGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAATCGAAGGCTAGGGGACTGAGGTGTGGATGACTGTGTGGTCTG  200

seq1  GGTGCAAAGAGCAGAACACACTCTAGGGCCACCAAAGAGCCAGGACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAGAGCAGAACACACTCTAGGGCCACCAAAGAGCCAGGACTTGT  250

seq1  GGGAAGCACAAGCTTGGAATGACACTGTTGCCTGTGCAGTATGCCTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACAAGCTTGGAATGACACTGTTGCCTGTGCAGTATGCCTGGTA  300

seq1  GTGGAGCATAGTGGTAGGGGAGCTGGGGTGGGCATGGTGTGGTGAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATAGTGGTAGGGGAGCTGGGGTGGGCATGGTGTGGTGAATGGC  350

seq1  AGCCGCTGTGACTTCGTGGGTTGGACACAGCAGTAAGTGCTTTCGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGTGACTTCGTGGGTTGGACACAGCAGTAAGTGCTTTCGAGTGT  400

seq1  CGGCTAGGTCAACAGCACCCCGAATGGTTTATCCCCATCTACATAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAGGTCAACAGCACCCCGAATGGTTTATCCCCATCTACATAGAGGC  450

seq1  CCAGCCAGGGGACAAAACTGCTCCAGGTTACATGGTGAGTCCAAAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGGGACAAAACTGCTCCAGGTTACATGGTGAGTCCAAAAATGG  500

seq1  AGTTGGGATGGTAATCCAGATTGTCCCCTGTGCTCTTGTTCCTTGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGATGGTAATCCAGATTGTCCCCTGTGCTCTTGTTCCTTGCAGGA  550

seq1  GCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAG  600

seq1  GACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGAT  650

seq1  AGGTGGGTGTCAGCTTCGCGTCGGGTTGAAGGGTGATGTGACTGTGCTGT  700
      ||||||||||||||||| |||  |||||||||||||||||||||||||||
seq2  AGGTGGGTGTCAGCTTCCCGTTCGGTTGAAGGGTGATGTGACTGTGCTGT  700

seq1  GCGTAGGAAAGCACTG-AAGGAGCAACAG-TTTTCACGTG-TGGCCTGAG  747
      |||||||||||||||| ||||| |||||| |||||||||| ||| |||||
seq2  GCGTAGGAAAGCACTGAAAGGAACAACAGTTTTTCACGTGTTGGTCTGAG  750

seq1  GTAAAGC  754
      |||||||
seq2  GTAAAGC  757

seq1: chr2_59661742_59662842
seq2: B6Ng01-154G21.g_67_1161 (reverse)

seq1  CAGCTCCTGCACTAGGTACTTCCTCACTGTCGTCGGGACAGACCCATGCA  50
      ||||||||||||   ||||||||||  ||| | |||||||||||||||||
seq2  CAGCTCCTGCACATAGTACTTCCTCCATGT-GGCGGGACAGACCCATGCA  49

seq1  GGGTCTGTGCACCCGCTTCACAGCATCCACGTC-TGGGCATCATGACTCC  99
      |||||||| ||||||||||||||||| |||||| ||| ||||||||||| 
seq2  GGGTCTGT-CACCCGCTTCACAGCAT-CACGTCTTGGACATCATGACTCT  97

seq1  TACTGATTGAAAGCAGGAGGATGTCTGAAGTGACGCCCGC-TCTCAACCA  148
      |||||||||||||||||||||||||||||| ||| ||||| |||| ||||
seq2  TACTGATTGAAAGCAGGAGGATGTCTGAAGGGAC-CCCGCTTCTC-ACCA  145

seq1  GAAAGGCCAGGGAGAGACCTGATGGGGAGGGGTAGCCGAGAGGAGGAGGC  198
      |||||| |||||||||| |||||||||| |||||||||||||||||||||
seq2  GAAAGG-CAGGGAGAGA-CTGATGGGGA-GGGTAGCCGAGAGGAGGAGGC  192

seq1  ATGGATGATCCTTAGTGCTTGAACTGATGTGTCCTCATGTGTCATCAGGA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGATCTTTAGTGCTTGAACTGATGTGTCCTCATGTGTCATCAGGA  242

seq1  AGAGCTGGCTCAGAAGAGCAAGAGCTTTATTGCAGGTTCCAGAGACTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGCTCAGAAGAGCAAGAGCTTTATTGCAGGTTCCAGAGACTTTC  292

seq1  ATCTAAAACCGTGTTTAGTCTGAGCACTGGGATGAACCCACATGTTTTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACCGTGTTTAGTCTGAGCACTGGGATGAACCCACATGTTTTAG  342

seq1  AAAACTCCTAAGTACCTGCTGATTTGGGGAGCAGAGGGCTTTACTTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCTAAGTACCTGCTGATTTGGGGAGCAGAGGGCTTTACTTAGAA  392

seq1  ACCCTTCCTTTTCACAGAGCTGCTGCTGCTGCTTGTCTGGGCGGTGTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTTTTCACAGAGCTGCTGCTGCTGCTTGTCTGGGCGGTGTTTA  442

seq1  GAGACAAGCCCTTCAAAGTGAGTTAGTTCTGTGGTTGCAATAGCACTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGCCCTTCAAAGTGAGTTAGTTCTGTGGTTGCAATAGCACTGAG  492

seq1  CCACTGCCTTCCTTTCCCCACGCCTCCTTCCTTGTCTCCTCTTCCTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTTCCTTTCCCCACGCCTCCTTCCTTGTCTCCTCTTCCTTTCT  542

seq1  CTCCTCTCCTCGTCTTCAGAGGAGAGTGAGTCCCGACCTGTTAGCAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTCGTCTTCAGAGGAGAGTGAGTCCCGACCTGTTAGCAGAAA  592

seq1  TGGCACCGCCAGTGAGGCCACCACTGTACCACCCACAGACTGTCAGATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCGCCAGTGAGGCCACCACTGTACCACCCACAGACTGTCAGATGA  642

seq1  GGATCATCCCACAGTTCTGGGCAGCCTGAAACATGGCGGGAGCCCATCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCCCACAGTTCTGGGCAGCCTGAAACATGGCGGGAGCCCATCAG  692

seq1  ATGCCTGGATTATCTGCCTCAGCATTCCACAGCCATGACGAGTCAGCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGATTATCTGCCTCAGCATTCCACAGCCATGACGAGTCAGCCCC  742

seq1  GGCTCCCACAGAGTCCCAACTGAATTGAGTTACTGTTTCCACATCAGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCACAGAGTCCCAACTGAATTGAGTTACTGTTTCCACATCAGTGT  792

seq1  TTGATGTGGATCAACCCAAGCCGAGACAACCAGGGACACTTCACTGGCGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGATCAACCCAAGCCGAGACAACCAGGGACACTTCACTGGCGA  842

seq1  CCTAATACGATGCTGTGGGAACTGACAGACCATGTTCCCAGCACCAGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATACGATGCTGTGGGAACTGACAGACCATGTTCCCAGCACCAGGCT  892

seq1  TCGGTCCAGCCTGAGTCTGCACCCTGCTTCTGTTTAGATGGAAATAGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCCAGCCTGAGTCTGCACCCTGCTTCTGTTTAGATGGAAATAGGGT  942

seq1  TCTCACTTTGCAGCCTGCTCTCTGAGAGCAAGGACTTCTCCACCATGGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTGCAGCCTGCTCTCTGAGAGCAAGGACTTCTCCACCATGGCT  992

seq1  CCCATCTGCCTGGTCTGCAGAGACTGTTTCCACAGACTGTCGAGCTGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCCTGGTCTGCAGAGACTGTTTCCACAGACTGTCGAGCTGTTT  1042

seq1  CATCAGGATCAGCTGTGGTGTACACACTGTGGGCTTCCCGAGCCCAGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATCAGCTGTGGTGTACACACTGTGGGCTTCCCGAGCCCAGGAA  1092

seq1  TTC  1101
      |||
seq2  TTC  1095