BAC Information

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BAC

Clone NameB6Ng01-154L03
Chromosome3 (Build37)2 (Build37)
Map Location 39,507,076 - 39,507,53785,417,735 - 85,418,800
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041443, LOC100041458, LOC100040882, Intu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154L03.bB6Ng01-154L03.g
ACCDH949671DH949672
length9911,072
definitionDH949671|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L03, 5' end.DH949672|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,507,076 - 39,507,537)(85,417,735 - 85,418,800)
sequence
gaattctttgtttaggtctgagccccatttttttttaattttttattagg
tatttagctcatttacatttccaatgctataccaaaagtcccccataccc
acccacccccactcccctacccaccactccccctttttggccctggcgtt
cccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttc
cagtgatggccgactagaccatcttttgatacatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccacctatagggttg
cagatccctttagctccttgggtactttctctagctcctccattgggagc
cctgtgatccatccattagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagtctcacaagagacagctacatctgggtcctttcgat
aaaatcttgctagtgtatgcaatggtttcagcgtttgtatctgaatccca
ttttttaatggggttatttgattttctggagtccaccttcttgagttctt
tatatatattggatattagttctctatctgatttaggataggtaaagatc
ctttcccaatctgttggtggccttttagtcttattgacggtgtctttttc
ctgtcttttttccactggatgattttagctcttttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctattccattggt
ctacttctctgttgctataccaataccatgaaatttttatcacaattgct
ctgtagtacagctttaggttgggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctacgtgttttgttattccagatga
atctggagatggcctttctaattcattgaagaattgagttggaattttga
ggggattgcattgagtctgtagatgcttttggcaagatagc
gaattcacaccaatcacacactagatttattttctcttttcattgaagga
tcattattaaatgaaaatcatatgttttattattcttcaggatagtcatc
ctttttgccaagtatgtatttatctttcccatatctctttataatgagga
aatgaagcagactgaaatacacacaaatgaattatacctttacattagtt
tcatattggtcattatttagtaagaattgggtgccatatttaacattttt
ctaatatatgatgtagaatgctaaacatgcagttgtagttatagtgttcc
taataaaagtattctcaagtaggattttataactgtgtgcatgcatgtat
gttagtgtgcatgtgtgtctctatgtgtgaatattcatgtgcatgttaga
tatgtgcatatggatgccagaggaaaacaccaactgctattctgtactgt
ccatcttgaatttgcagagtaggtctccaatgatatggcttgccatgtgg
gaaaaaccaattgttgagttatcccaagggattcccattctctctgtcac
tcctgacctgggataataggtacataccatcaagtctaacttataaaatg
ggaattctagggagcaaatttcagtactcaaatttgtaggccaaggaatt
aaaaaacctgtcatattccaaacgatataagattgtttcattattccacc
gagtaagatgaacaaatacagagtaatatttaatacaagtacaattttaa
aatcaagggacatattagatcaatgtagtaactaactctttaaatttatt
ttgtttattcattttatatcctgtatactgccccttctcagtcactctgt
cccacattccttcccccctccaccctctgttctcctctgagcaggtgggg
tcctcctgggtaatccctccacattgatatttcatgtctgagaggctagt
tgcttcacactgaggcctgacaaggcatcccagctagtagaacacatttc
acatgcagcagagctttgggacagcccctgttccattttgggggacccac
ataagccagctgcataccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39507076_39507537
seq2: B6Ng01-154L03.b_74_533 (reverse)

seq1  CAAACGCTGACACCATTGCATATACTAGCAAGATTTTATCGAAAGGACCC  50
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  CAAACGCTGAAACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCC  50

seq1  AGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAA  100

seq1  GTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG  150

seq1  GAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT  200

seq1  GGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCTAGCTG  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTG  250

seq1  CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATATGTATCAAAAGATGGTCTAGTCGGCCATCACTGGAAAGAGAGGCCC  300

seq1  ATTGGACACGCAGACTTTGTGTGCCCTGGTACAGGGGAACGCCAGGGCCA  350
      |||||||||||| ||||| | |||||  ||||||||||||||||||||||
seq2  ATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCA  350

seq1  AAGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGA  400
      ||  |||||||| |||||||||||||||||||||||||||||| ||||||
seq2  AAAAGGGGGAGT-GGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGA  399

seq1  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAA  449

seq1  TGGAAAAAAAAA  462
      |  |||||||| 
seq2  TTAAAAAAAAA-  460

seq1: chr2_85417735_85418800
seq2: B6Ng01-154L03.g_84_1140

seq1  ACACACTGGATTTATTTTCTCTTTTCATTGGAGGATCATTATTAAATGAA  50
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  ACACACTAGATTTATTTTCTCTTTTCATTGAAGGATCATTATTAAATGAA  50

seq1  TATAATATGTTTTACTTATCTTTAGAATAATCATCCTTTTTGCCAAGTGT  100
       || |||||||||| |  |||| || ||| |||||||||||||||||| |
seq2  AATCATATGTTTTATTATTCTTCAGGATAGTCATCCTTTTTGCCAAGTAT  100

seq1  GTATTTATCTTTCCCATATCTCTTTATAAAGAGGAAGTGAAGCAGACTGG  150
      ||||||||||||||||||||||||||||| |||||| |||||||||||| 
seq2  GTATTTATCTTTCCCATATCTCTTTATAATGAGGAAATGAAGCAGACTGA  150

seq1  AACACACACAAATGAATTATACCTTTACATTATTTTCATATTGGTCATTA  200
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATACACACAAATGAATTATACCTTTACATTAGTTTCATATTGGTCATTA  200

seq1  TTTAGTAAGAATTGGGTGCCACATTTAACACTTCTCTAGTATATGATATA  250
      ||||||||||||||||||||| |||||||| || |||| |||||||| ||
seq2  TTTAGTAAGAATTGGGTGCCATATTTAACATTTTTCTAATATATGATGTA  250

seq1  GAATGCTAAACTTCCAGTTGTATTTATAGTGTTCCTAATAAAAGTATCTC  300
      ||||||||||| | |||||||| ||||||||||||||||||||||||   
seq2  GAATGCTAAACATGCAGTTGTAGTTATAGTGTTCCTAATAAAAGTATTCT  300

seq1  CAAGTAGAAATTTTTTATAATTTTGCACATGCATGCGTGTGAGTGTGCAT  350
      ||||||| |   |||||||| | ||  ||||||||  ||| |||||||||
seq2  CAAGTAGGA---TTTTATAACTGTGTGCATGCATGTATGTTAGTGTGCAT  347

seq1  GTGTGTCTCTCTG------------TGTGTATGTTAGGTATGTGCATATG  388
      |||||||||| ||            |||| ||||||| ||||||||||||
seq2  GTGTGTCTCTATGTGTGAATATTCATGTGCATGTTAGATATGTGCATATG  397

seq1  GATGCCAGAGGAAAACCCCAACTGCTAATCTGTGCTGTGTATCTTGAATT  438
      |||||||||||||||| |||||||||| ||||| ||||  ||||||||||
seq2  GATGCCAGAGGAAAACACCAACTGCTATTCTGTACTGTCCATCTTGAATT  447

seq1  TGCAGACTGGGTCTCCAATGGTATGGCTTGCCAAGTGGAAAAGACCAATT  488
      |||||| | ||||||||||| |||||||||||| |||| ||| |||||||
seq2  TGCAGAGTAGGTCTCCAATGATATGGCTTGCCATGTGGGAAAAACCAATT  497

seq1  GTTGAGTTATCCCAAGGGATTCCCATTGTCTCTGTCACTCCTGACTTGGG  538
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GTTGAGTTATCCCAAGGGATTCCCATTCTCTCTGTCACTCCTGACCTGGG  547

seq1  ATAATAAGTACATACCAGCAAGTCTAACTTTTAAAATGGGAATAATAGGG  588
      |||||| |||||||||| |||||||||||| ||||||||||||  |||||
seq2  ATAATAGGTACATACCATCAAGTCTAACTTATAAAATGGGAATTCTAGGG  597

seq1  AGCAAATTTTAGTACTCACATTTGTAGGCTAA-GAACTTAAAAACCTGAC  637
      ||||||||| |||||||| |||||||||| || ||| | ||||||||| |
seq2  AGCAAATTTCAGTACTCAAATTTGTAGGCCAAGGAATTAAAAAACCTGTC  647

seq1  ATTTTCCAAACCATGTAAGATGGTTTCATTATTCCACCACAGAGTAAGAT  687
      || |||||||| || |||||| ||||||||||||||||   |||||||||
seq2  ATATTCCAAACGATATAAGATTGTTTCATTATTCCACC---GAGTAAGAT  694

seq1  GAACAAATACAGAGTAATTTTTAGTACAAGCAAAATTTTAAAATCAAGGG  737
      |||||||||||||||||| |||| |||||| | |||||||||||||||||
seq2  GAACAAATACAGAGTAATATTTAATACAAGTACAATTTTAAAATCAAGGG  744

seq1  ACATATTAGATCAATGTAGTAACTAACTCTTTTTAAATTTATTTTGTTTA  787
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ACATATTAGATCAATGTAGTAACTAACTC--TTTAAATTTATTTTGTTTA  792

seq1  TTCATTTTACATCCTGTATACTGCCCCCTCTC-GCCACTCCCTCCCACAT  836
      ||||||||| ||||||||||||||||| |||| | |||||  ||||||||
seq2  TTCATTTTATATCCTGTATACTGCCCCTTCTCAGTCACTCTGTCCCACAT  842

seq1  TCCTTTCACCATCCACCCTCTATTATCCTTTGAGCTGCTAGGGTCCTCCT  886
      ||||| | || |||||||||| || |||| ||||| | | ||||||||||
seq2  TCCTTCCCCCCTCCACCCTCTGTTCTCCTCTGAGCAGGTGGGGTCCTCCT  892

seq1  GGGTAATCCCTCCACCTTGGTATTTTATGTCTGAGAGGCTAGTTGCTTCT  936
      ||||||||||||||| ||| ||||| ||||||||||||||||||||||| 
seq2  GGGTAATCCCTCCACATTGATATTTCATGTCTGAGAGGCTAGTTGCTTCA  942

seq1  CATTGAGGCCTGTCAAGGCGTGCCAGCTAGTATATAGTAGAACATATTCC  986
      || ||||||||| |||||| | |||||       |||||||||| ||| |
seq2  CACTGAGGCCTGACAAGGCATCCCAGC-------TAGTAGAACACATTTC  985

seq1  ACATACAGGCAAAAGCTTTTGGGATAGCCCCTGTTCCAGTTTTTTGGAAC  1036
      |||| |||   | ||| ||||||| ||||||||||||| ||||  || ||
seq2  ACATGCAG--CAGAGC-TTTGGGACAGCCCCTGTTCCA-TTTTGGGGGAC  1031

seq1  CCACATGAAGGCCAAGCTGCATACACATCT  1066
      |||||| |||  | |||||||||| |||||
seq2  CCACAT-AAG--CCAGCTGCATAC-CATCT  1057