BAC Information

Click to search

BAC

Clone NameB6Ng01-155F17
Chromosome2 (Build37)X (Build37)
Map Location 142,776,661 - 142,777,69881,505,103 - 81,506,168
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155F17.bB6Ng01-155F17.g
ACCDH950163DH950164
length9551,050
definitionDH950163|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F17, 5' end.DH950164|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,661 - 142,777,698)(81,505,103 - 81,506,168)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctctt
ctgttcaggaatttttcccctgtgcccatatctttgaggcttttccccac
tttctcctctataagtttcagtatctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
caccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagcttttatcata
cagatctttcacttccttagttagagtcacgccagatatttatatatttg
tgact
gaattctgcggtgacattacacaaactcttgctgcttcgtctctcttctg
tgctagtttaaatcatttccacaatgagatttgtactgaagcaatgcaag
atatagagtaggtccagggaggacaaacaacagctcatcttgttcttgga
ctaggatttaccattctggtagcatacattcattagaagctacacagcac
tgtgaggaagactgaaaaatgactaaagcttcatgcacttttgaggaaag
gccaagtggaaagtaaggaatgagaagtataggaggtgagagtcaacacc
agggaggctcagaatgagaaaagtaagaattggaattgcttattaaattc
aagatcaaatccaccttatatgcctctgcaacctgctctctctcacctgt
tctctccccaagtgtttagctccatgtctcaaggaaaaggaatgattttc
attttaccctttctgttggagtgattttatattttgacaatagtatgtct
ccagactttaagcatgccatagattcaacttttggaaaaagactttaaga
gtttttgatagtaatttgcaaactaaatcaaactaaagagagccagtctt
tgaaatgaacagcagattgttttaaataccccctttagcctctcccatct
cctggtcccattttatttcaaattcattaaaattttattatgttttatta
ataaaaacagtgaaagcacatatatacttttaatgagtttttttttccac
aagaactagggctaggaggtagactgttagaacacctctagtaacttctc
ttttccttgagatacaaaggaaacatgttcaccggtgctgtttgatattt
gttcttcataatgattgtcattaaaaagagaaactcatttttaaaaagac
tagatggcttctttcccaaagcaatattttgctagtgactaaaaaatatt
tacagtagcatttattgtgatgagacatttactatacaatgtaataaaat
ttatttgcatgtgcttatctcatgataaaggatataattatcaatatcat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776661_142777698
seq2: B6Ng01-155F17.b_51_628 (reverse)

seq1  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50

seq1  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTGACTTGATCTTCGACAAGGGAGC  100

seq1  TAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCT  200
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  200

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  250

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  300
      ||||| ||||||||||||||||||||||||||||||||||||  ||||||
seq2  AGAGATACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAAGATA  300

seq1  TGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  350
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTA  350

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  400

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  500

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  550

seq1  ATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  600
      |||||||||| ||            ||| |||||    |||         
seq2  ATGGGGCTCAGAA----------CTGAACAAAGA----ATTC--------  578

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  650
                                                        
seq2  --------------------------------------------------  578

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  700
                                                        
seq2  --------------------------------------------------  578

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  750
                                                        
seq2  --------------------------------------------------  578

seq1  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGC  800
                                                        
seq2  --------------------------------------------------  578

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  850
                                                        
seq2  --------------------------------------------------  578

seq1  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  900
                                                        
seq2  --------------------------------------------------  578

seq1  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  950
                                                        
seq2  --------------------------------------------------  578

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  1000
                                                        
seq2  --------------------------------------------------  578

seq1  CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1038
                                            
seq2  --------------------------------------  578

seq1: chrX_81505103_81506168
seq2: B6Ng01-155F17.g_65_1114 (reverse)

seq1  ATGATAATGATAAATTTATATCACTATTATCAATGAGATAAGCACATGCA  50
      |||||| ||||||  ||||||| || ||||| ||||||||||||||||||
seq2  ATGATATTGATAA--TTATATC-CT-TTATC-ATGAGATAAGCACATGCA  45

seq1  AATAAAATTTTATTACCATTTGTTATTAGTAAATGTCTCATCACAATAAA  100
      ||| ||||||||||||   ||||   ||||||||||||||||||||||||
seq2  AAT-AAATTTTATTAC--ATTGT--ATAGTAAATGTCTCATCACAATAAA  90

seq1  TTGCTACTGTAAATATTTTTTTAGTTCACTAGCAAAATATTTGCTTTGGG  150
       |||||||||||||| |||||||| |||||||||||||| ||||||||||
seq2  -TGCTACTGTAAATA-TTTTTTAG-TCACTAGCAAAATA-TTGCTTTGGG  136

seq1  AAAGAAGCCATCTAGTTCTTTTTTAAAAATGAGTTTCTCTTTTTAATGAC  200
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AAAGAAGCCATCTAGT--CTTTTTAAAAATGAGTTTCTCTTTTTAATGAC  184

seq1  AATCATTATGAAGAACAAATATCAAACAGCACCGGTGAACATGTTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATGAAGAACAAATATCAAACAGCACCGGTGAACATGTTTCCTT  234

seq1  TGTATCTCAAGGAAAAGAGAAGTTACTAGAGGTGTTCTAACAGTCTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCAAGGAAAAGAGAAGTTACTAGAGGTGTTCTAACAGTCTACCT  284

seq1  CCTAGCCCTAGTTCTTGTGGAAAAAAAAACTCATTAAAAGTATATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCTAGTTCTTGTGGAAAAAAAAACTCATTAAAAGTATATATGTG  334

seq1  CTTTCACTGTTTTTATTAATAAAACATAATAAAATTTTAATGAATTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGTTTTTATTAATAAAACATAATAAAATTTTAATGAATTTGAA  384

seq1  ATAAAATGGGACCAGGAGATGGGAGAGGCTAAAGGGGGTATTTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGGACCAGGAGATGGGAGAGGCTAAAGGGGGTATTTAAAACAA  434

seq1  TCTGCTGTTCATTTCAAAGACTGGCTCTCTTTAGTTTGATTTAGTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTCATTTCAAAGACTGGCTCTCTTTAGTTTGATTTAGTTTGCA  484

seq1  AATTACTATCAAAAACTCTTAAAGTCTTTTTCCAAAAGTTGAATCTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATCAAAAACTCTTAAAGTCTTTTTCCAAAAGTTGAATCTATGG  534

seq1  CATGCTTAAAGTCTGGAGACATACTATTGTCAAAATATAAAATCACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTAAAGTCTGGAGACATACTATTGTCAAAATATAAAATCACTCCA  584

seq1  ACAGAAAGGGTAAAATGAAAATCATTCCTTTTCCTTGAGACATGGAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGGTAAAATGAAAATCATTCCTTTTCCTTGAGACATGGAGCTA  634

seq1  AACACTTGGGGAGAGAACAGGTGAGAGAGAGCAGGTTGCAGAGGCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGGGAGAGAACAGGTGAGAGAGAGCAGGTTGCAGAGGCATATA  684

seq1  AGGTGGATTTGATCTTGAATTTAATAAGCAATTCCAATTCTTACTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTGATCTTGAATTTAATAAGCAATTCCAATTCTTACTTTTCT  734

seq1  CATTCTGAGCCTCCCTGGTGTTGACTCTCACCTCCTATACTTCTCATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAGCCTCCCTGGTGTTGACTCTCACCTCCTATACTTCTCATTCC  784

seq1  TTACTTTCCACTTGGCCTTTCCTCAAAAGTGCATGAAGCTTTAGTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCCACTTGGCCTTTCCTCAAAAGTGCATGAAGCTTTAGTCATTT  834

seq1  TTCAGTCTTCCTCACAGTGCTGTGTAGCTTCTAATGAATGTATGCTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTCCTCACAGTGCTGTGTAGCTTCTAATGAATGTATGCTACCA  884

seq1  GAATGGTAAATCCTAGTCCAAGAACAAGATGAGCTGTTGTTTGTCCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTAAATCCTAGTCCAAGAACAAGATGAGCTGTTGTTTGTCCTCCC  934

seq1  TGGACCTACTCTATATCTTGCATTGCTTCAGTACAAATCTCATTGTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTACTCTATATCTTGCATTGCTTCAGTACAAATCTCATTGTGGAA  984

seq1  ATGATTTAAACTAGCACAGAAGAGAGACGAAGCAGCAAGAGTTTGTGTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAACTAGCACAGAAGAGAGACGAAGCAGCAAGAGTTTGTGTAA  1034

seq1  TGTCACCGCAGAATTC  1066
      ||||||||||||||||
seq2  TGTCACCGCAGAATTC  1050