BAC Information

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BAC

Clone NameB6Ng01-155H06
Chromosome2 (Build37)5 (Build37)
Map Location 132,140,700 - 132,141,88442,901,636 - 42,901,847
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2
Downstream geneProkr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H06.bB6Ng01-155H06.g
ACCDH950231DH950232
length1,114995
definitionDH950231|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H06, 5' end.DH950232|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,140,700 - 132,141,884)(42,901,636 - 42,901,847)
sequence
gaattcatttgggcttacagttgcagaggggtaagaaagagtccaggatg
gaggggcggcagcaggcggcagccatggtggctggagcagaagctaatgg
ctcacaagcacaaggcagagacagggaattggtaatggtgtgtggctttg
aaaccttttagcccaccgtagtgacagacttcctccactagggccacacc
taaaccgtactaaccggggaccgagtgttcaaacatccgagtccatggtg
ggtggttctcattcagatcaccacactgtccgtcatctagtatgtatgta
tgtatgtatgtatgtatgtaagcatgtatgtatccacccaactacatatc
agttatttatctacctacttacctatcatctacctatccacctacctatc
atctatttatctatctattgtccgacctatctatctaattattatttatc
tatgtacgtgcctacttaacctacctatcatctgtgtaccctcttaccta
tcatacattatccatctgcctgcctgcctgcctacgttcttacctaaaaa
ggtatctgattctccaaagtaagaagacacccagaaagccaagtagagag
aaccagagggacctgctggggtgagaagtcgggttacacgattgaatttg
gttagtggatagatgagtgtttatagcaataaaagaagtgttttgttttg
tatggagtcctcgatacacagaagaattcttgagaagtggccacctttaa
tcctgactatttgtaaaggagaatggcctgggggtacatgccaggtcgtc
tatctctgagctacattctcatttcctatacgattttttatacacatgta
caatttataatatgtgcaattttgagaggccctgtagtagattggagaac
aagaaatgcctcctttctgctctgcctgccccatcttccatttgatggaa
atgctgtccctggtctctgcagtttgagaggctgagtaaaactcagttcc
tatttgcatgcatgagtgttacagcattaatgaaaaaaaaaaaagaacca
cacattgaagaaagcagatgtggttatcggagggttttggagtgagaaaa
gggaagggaaatca
gaattcttgatgcagttccatgtgagagaaacttacaatgccgtctctca
gatttgcgtgcacggttttctctgctaagccctcaaagccttggtcacat
ctgctgactgaggaaaaagacctagggtccagagtaagggttagggaaca
ttcttgtgtagtccaaagtatgtgtcctatctaaccaagatcttgattct
cagaccagcagacagcctcagaagtggcaaaggagagtcagcacagtgag
catgtcacgttcaattttatatcgtgttgactgggctaaggggtgtctat
acagctgatgttttgggtaggcgtgtgcctgtgtttctaggggagattag
cgattgaactggcaaagtactacatcatttttggtgggggagtttctctg
tgaagccctggttgtcctggaactcactctgtagagcaggctggcctcag
acatagaggtctgtctgactctgtctctgcctcttgaatgctcagatgaa
aggcgtgcaccagctctgccatctgtcttttctagcatggtaggcattgt
tcaatccactgaaagcctgaagagaacagaacaggtgtaaaagtggcctt
tattctcctgtaataattgtcgcagaagcttactgcctccgtctgctaac
ctaggcctagtcctggaagcttctagcctctctacaatcttatctaggcc
tagaatattttcagcctctgagacttactgctgaataagctcaccctttc
tagttatttctggtctctgcctgactgattcaactcagctgttctggctc
agacgtgtctccatgctgactgattctatcttgcttctctgggcttctcc
tgaattgctctgcttggcctcaaactatctctgtcaatctgttctaatct
tctggtctttctcattctctggctcattctgtcttcacctgtgtctagct
gtctctctgcaacctgtctcctaaactcctcctggtaaattgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_132140700_132141884
seq2: B6Ng01-155H06.b_46_1159

seq1  GAATTCATTTGGGCTTACAGTTGCAGAGGGGTAAGAAAGAGTCCAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGGCTTACAGTTGCAGAGGGGTAAGAAAGAGTCCAGGATG  50

seq1  GAGGGGCGGCAGCAGGCGGCAGCCATGGTGGCTGGAGCAGAAGCTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCGGCAGCAGGCGGCAGCCATGGTGGCTGGAGCAGAAGCTAATGG  100

seq1  CTCACAAGCACAAGGCAGAGACAGGGAATTGGTAATGGTGTGTGGCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGCACAAGGCAGAGACAGGGAATTGGTAATGGTGTGTGGCTTTG  150

seq1  AAACCTTTTAGCCCACCGTAGTGACAGACTTCCTCCACTAGGGCCACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTAGCCCACCGTAGTGACAGACTTCCTCCACTAGGGCCACACC  200

seq1  TAAACCGTACTAACCGGGGACCGAGTGTTCAAACATCCGAGTCCATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGTACTAACCGGGGACCGAGTGTTCAAACATCCGAGTCCATGGTG  250

seq1  GGTGGTTCTCATTCAGATCACCACACTGTCCGTCATCTAGTATGTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCTCATTCAGATCACCACACTGTCCGTCATCTAGTATGTATGTA  300

seq1  TGTATGTATGTATGTATGTAAGCATGTATGTATCCACCCAACTACATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTAAGCATGTATGTATCCACCCAACTACATATC  350

seq1  AGTTATTTATCTACCTACTTACCTATCATCTACCTATCCACCTACCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTATCTACCTACTTACCTATCATCTACCTATCCACCTACCTATC  400

seq1  ATCTATTTATCTATCTATTGTCCGACCTATCTATCTAATTATTATTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTATCTATCTATTGTCCGACCTATCTATCTAATTATTATTTATC  450

seq1  TATGTACGTGCCTACTTAACCTACCTATCATCTGTGTACCCTCTTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACGTGCCTACTTAACCTACCTATCATCTGTGTACCCTCTTACCTA  500

seq1  TCATACATTATCCATCTGCCTGCCTGCCTGCCTACGTTCTTACCTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATTATCCATCTGCCTGCCTGCCTGCCTACGTTCTTACCTAAAAA  550

seq1  GGTATCTGATTCTCCAAAGTAAGAAGACACCCAGAAAGCCAAGTAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGATTCTCCAAAGTAAGAAGACACCCAGAAAGCCAAGTAGAGAG  600

seq1  AACCAGAGGGACCTGCTGGGGTGAGAAGTCGGGTTACACGATTGAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGGACCTGCTGGGGTGAGAAGTCGGGTTACACGATTGAATTTG  650

seq1  GTTAGTGGATAGATGAGTGTTTATAGCAATAAAAGAAGTGTTTTGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGATAGATGAGTGTTTATAGCAATAAAAGAAGTGTTTTGTTTTG  700

seq1  TATGGAGTCCTCGATACACAGAAGAATTCTTGAGAAGTGGCCACCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTCCTCGATACACAGAAGAATTCTTGAGAAGTGGCCACCTTTAA  750

seq1  TCCTGACTATTTGTAAAGGAGAATGGCCTGGGGGTACATGCCAGGTCGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTATTTGTAAAGGAGAATGGCCTGGGGGTACATGCCAGGTCGTC  800

seq1  TATCTCTGAGCTACATTCTCATTTCCTATACGA-TTTTTATACACATGTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATCTCTGAGCTACATTCTCATTTCCTATACGATTTTTTATACACATGTA  850

seq1  CAATTTTATAATATGTGCAATTTTGAGAGGCCCTGTAGTAGATTGGAGAA  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-TTTATAATATGTGCAATTTTGAGAGGCCCTGTAGTAGATTGGAGAA  899

seq1  CAAGAAATGCCTCCCTTCTGCCTCTGCCTGCCCCATCTTCCATTTGATGG  949
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CAAGAAATGCCTCCTTTCTG-CTCTGCCTGCCCCATCTTCCATTTGATGG  948

seq1  AAATGCTGTCCCTGGTCTCTGCAGTTTGAGAGGCCTGAGTAAAACTCAGT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGCTGTCCCTGGTCTCTGCAGTTTGAGAGG-CTGAGTAAAACTCAGT  997

seq1  TCCTATATGCATGCATGAGTGTTACAGCAATTAATGAAAAAAAAAAAAAG  1049
      |||||| ||||||||||||||||||||| |||||||||||||||||||  
seq2  TCCTATTTGCATGCATGAGTGTTACAGC-ATTAATGAAAAAAAAAAAAGA  1046

seq1  ACCACACATTTGAAAGAGAGCAAGAGGTGGTATACGGGAGGG-TTTGGAG  1098
      ||||||||||   |||| ||| ||| ||||| ||  |||||| |||||||
seq2  ACCACACATT--GAAGAAAGC-AGATGTGGT-TATCGGAGGGTTTTGGAG  1092

seq1  TGAGAAAAGGGAAGGGGAAATGATGTGAGTATCTAAAAAAAACCATAACA  1148
      ||||||||||||| ||||||| |                           
seq2  TGAGAAAAGGGAA-GGGAAATCA---------------------------  1114

seq1  GTAATAACAATAAACTCCAAACCAGCCAACCAAATCA  1185
                                           
seq2  -------------------------------------  1114

seq1: chr5_42901636_42901847
seq2: B6Ng01-155H06.g_471_986 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CAGAGAATGAGAAAGACCAGAAGATTAGAACAGATTGACAGAGATAGTTT  50

seq1  --------------------------------------------------  0
                                                        
seq2  GAGGCCAAGCAGAGCAATTCAGGAGAAGCCCAGAGAAGCAAGATAGAATC  100

seq1  --------------------------------------------------  0
                                                        
seq2  AGTCAGCATGGAGACACGTCTGAGCCAGAACAGCTGAGTTGAATCAGTCA  150

seq1  --------------------------------------------------  0
                                                        
seq2  GGCAGAGACCAGAAATAACTAGAAAGGGTGAGCTTATTCAGCAGTAAGTC  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCAGAGGCTGAAAATATTCTAGGCCTAGATAAGATTGTAGAGAGGCTAGA  250

seq1  -----------------------CAG-AGAATGAGAAAGATAACCT----  22
                              || |||  |||  || ||| ||    
seq2  AGCTTCCAGGACTAGGCCTAGGTTAGCAGACGGAGGCAG-TAAGCTTCTG  299

seq1  CAACAA--CTTA----AGA---------------ACACATGAT---TCAT  48
      | ||||   |||    |||               |||| || |   |  |
seq2  CGACAATTATTACAGGAGAATAAAGGCCACTTTTACACCTGTTCTGTTCT  349

seq1  ATTCAGACATCAATAAGATTGAGCA--GTTAATTAGGTTAAAAAAATGCT  96
       ||||| | |  |   |||||| ||  |   |  | | || ||||     
seq2  CTTCAGGCTTTCAGTGGATTGAACAATGCCTACCATGCTAGAAAA-----  394

seq1  GTCAGATGGGCATGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCA  146
      | |||||||    | |||  || |||||| |||  |||| |   ||||||
seq2  GACAGATGGCAGAGCTGGTGCACGCCTTTCATCTGAGCATTCAAGAGGCA  444

seq1  GAGGCAG-GT-----GGATTTCTGAGTGTGAGGCCAACCTGGTCTACAGA  190
      ||| ||| ||      ||  |||  || |||||||| |||| ||||||||
seq2  GAGACAGAGTCAGACAGACCTCTATGTCTGAGGCCAGCCTGCTCTACAGA  494

seq1  GTGAGTTCCAGGACAGCCAGGG  212
      ||||||||||||||| ||||||
seq2  GTGAGTTCCAGGACAACCAGGG  516