BAC Information

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BAC

Clone NameB6Ng01-155H18
Chromosome2 (Build37)
Map Location 176,845,614 - 177,029,585
singlet/doubletdoublet
Overlap gene6230416C02Rik, LOC635470, LOC100043403, LOC100039198
Upstream geneLOC100039049, LOC626832, OTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166
Downstream geneLOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H18.bB6Ng01-155H18.g
ACCDH950254DH950255
length1,1521,115
definitionDH950254|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H18, 5' end.DH950255|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,028,414 - 177,029,585)(176,845,614 - 176,846,762)
sequence
gaattcccattttggatctgtattatgagatatgtgcaattcttggtgac
atatttaagtgagctcagaaatgtaaaacaaatgccattagctgtagctg
tgtgtgtcagattatagatctcagtagttaacaaagcacataggagcaag
ttcaaatactatcttattaatgccattttttctacgaggaagggcatgat
ctttttcaaatcagtacagtaatatatatttttcagttatttttatcttt
ttaaaaagttattttttggtactactttttaaatttcattttcactatcc
atacgtgacctcttacatgtttctgttctccaatattgaccccaaattaa
gaatttcattcctatttttaaagagatttcatatctgtctgcttagagaa
acatctcctgtagctttttctttatgccatgtagttaagagttgctttga
actctgaatcctgcctctgctgcccagggcttggaaaacattcctacaac
tgctttcaggctgggttctgactgatcagtgagccaaaagacaccaggga
atgagtgttgtctaacctccctgggtgacagggttacaaattaggggatt
acaaataaagagggacaggtataaggttgagttcagtgtccaactttgaa
gctggtctacttgcggcacagaagaggaggaggaataaggtaggtgaggc
ctttctgctttggcagtggttgacattcaccgtgaggagtcaaggaatca
attttacataatcagtaaaattccatactggccatcttgtggcatttccc
agattagggcagtgacaaatgagatcacaggccctgcccattacaacata
ttgctggcttacctcaccatctaccccaggagtaggacagccaatctccc
agctgtcattctgtatgcaatccaatcatttgggaactggccttttcatc
tatcattaatcctcctgacctggctcttgctctccctccttcctgtcttc
acaagtcagtcatgtctactctatattttcccaggtacaaatggtctggc
tatgttctcacttgtgtaaataaaactttctactcacatactagagcagt
gatgctttttttgaaaaacttctttctacttttctcacccaatggctgct
tg
gaattccttacccactggctcaagctaacctgatcaaataaaacaccctt
caatctaggtttactaaattacatccatacatggatacagtctgtaaaat
tacaaaatcattctcagtccttgaatcaggtccttctccataacagtgac
ccctgcagcacactcccttttcctttggtctgtgacctagctcttgtcag
cactgttttacctgacagtgtacacagtaagctgttcctctggttctcat
cctgccaaatatatttctccacacaagcccctgacacaaaggttttgaca
agatgcagtcttataataaagttaatcagaggccacagctgggaccaaaa
ggagagagtaggtccacaaaggacctcacagatgtccccatctgtctggc
tgatgctgacaatccagcctctgggaagagatattacacaatcatccttt
gctaagatgcttgctcctcctctttgtgggagatgacattgcacttacca
tgtctgaagttctaagtttgcctgagctaacctcacagcaaccagcaaaa
ataataagaaccgattccacagaaacactgagatcagctgagttacacag
aggaacatgcaggcttagtacctggaagagtcacctcatcttctgactgg
cagctccatgtggaggctctaattcgctattgagtcttgagtgaagtgaa
caccaggcttagggttagagtgtgctgtagagatgcaggccagtggttcc
agtctgggccaatccttttccagatctgcagatttgcagttcagtagcac
cagtgtgtctcctccaatagtctgttccctcaccaagcttttgggagagg
ctaagattcctgatccttgctgcctaagtgcctgcctctccctttctggg
cagtgcccctgggttcactgctttgaagttggagtttgcctgagctctaa
ttccagcgctcagagcattcccttcttcctctgatcaggtggatactaca
ttccccatcatcagctgaattgagttacaaactgtccacagggtgtcagg
ccaatttagtactgaaaaatttagactagatttggtttggcttcagctgg
gttcaggtaacggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_177028414_177029585
seq2: B6Ng01-155H18.b_49_1200 (reverse)

seq1  CAAGCAGCCATTGGGTGAGAAAAAGGTAGAAAAAGAAGATATTTTAAAAA  50
      |||||||||||||||||||||||  ||||  |||||||   ||||  |||
seq2  CAAGCAGCCATTGGGTGAGAAAA--GTAG--AAAGAAG---TTTTTCAAA  43

seq1  AAAAGACATCACTGCTCCTAGGTATGTTGGAGTAGAAAGTATATTATACA  100
      ||||| |||||||||| ||| ||||||  ||||||||||| |  | ||||
seq2  AAAAG-CATCACTGCT-CTA-GTATGT--GAGTAGAAAGTTTTATTTACA  88

seq1  CAAAGTGAGAACATAGCCAGACCCATTTGTACCTGGGAAAATATAGAGTA  150
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  C-AAGTGAGAACATAGCCAGA-CCATTTGTACCTGGGAAAATATAGAGTA  136

seq1  GACATGACCTTGGACCTTGTGAAGACAGGAAGGAGGGGAGAAGCAAGAGC  200
      ||||||||  ||   ||||||||||||||||||| ||||| |||||||||
seq2  GACATGAC--TG--ACTTGTGAAGACAGGAAGGA-GGGAG-AGCAAGAGC  180

seq1  CAGGTCAGGAGGATTAATGATAGATGAAAAGGCCAGTTCCCAAATGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGGAGGATTAATGATAGATGAAAAGGCCAGTTCCCAAATGATTG  230

seq1  GATTGCATACAGAATGACAGCTGGGAGATTGGCTGTCCTACTCCTGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATACAGAATGACAGCTGGGAGATTGGCTGTCCTACTCCTGGGGT  280

seq1  AGATGGTGAGGTAAGCCAGCAATATGTTGTAATGGGCAGGGCCTGTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGAGGTAAGCCAGCAATATGTTGTAATGGGCAGGGCCTGTGATC  330

seq1  TCATTTGTCACTGCCCTAATCTGGGAAATGCCACAAGATGGCCAGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTCACTGCCCTAATCTGGGAAATGCCACAAGATGGCCAGTATGG  380

seq1  AATTTTACTGATTATGTAAAATTGATTCCTTGACTCCTCACGGTGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTGATTATGTAAAATTGATTCCTTGACTCCTCACGGTGAATGT  430

seq1  CAACCACTGCCAAAGCAGAAAGGCCTCACCTACCTTATTCCTCCTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTGCCAAAGCAGAAAGGCCTCACCTACCTTATTCCTCCTCCTCT  480

seq1  TCTGTGCCGCAAGTAGACCAGCTTCAAAGTTGGACACTGAACTCAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCGCAAGTAGACCAGCTTCAAAGTTGGACACTGAACTCAACCTT  530

seq1  ATACCTGTCCCTCTTTATTTGTAATCCCCTAATTTGTAACCCTGTCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTCCCTCTTTATTTGTAATCCCCTAATTTGTAACCCTGTCACCC  580

seq1  AGGGAGGTTAGACAACACTCATTCCCTGGTGTCTTTTGGCTCACTGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTAGACAACACTCATTCCCTGGTGTCTTTTGGCTCACTGATCA  630

seq1  GTCAGAACCCAGCCTGAAAGCAGTTGTAGGAATGTTTTCCAAGCCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACCCAGCCTGAAAGCAGTTGTAGGAATGTTTTCCAAGCCCTGGG  680

seq1  CAGCAGAGGCAGGATTCAGAGTTCAAAGCAACTCTTAACTACATGGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGCAGGATTCAGAGTTCAAAGCAACTCTTAACTACATGGCATA  730

seq1  AAGAAAAAGCTACAGGAGATGTTTCTCTAAGCAGACAGATATGAAATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCTACAGGAGATGTTTCTCTAAGCAGACAGATATGAAATCTC  780

seq1  TTTAAAAATAGGAATGAAATTCTTAATTTGGGGTCAATATTGGAGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAGGAATGAAATTCTTAATTTGGGGTCAATATTGGAGAACAG  830

seq1  AAACATGTAAGAGGTCACGTATGGATAGTGAAAATGAAATTTAAAAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTAAGAGGTCACGTATGGATAGTGAAAATGAAATTTAAAAAGTA  880

seq1  GTACCAAAAAATAACTTTTTAAAAAGATAAAAATAACTGAAAAATATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAAAATAACTTTTTAAAAAGATAAAAATAACTGAAAAATATATA  930

seq1  TTACTGTACTGATTTGAAAAAGATCATGCCCTTCCTCGTAGAAAAAATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTACTGATTTGAAAAAGATCATGCCCTTCCTCGTAGAAAAAATGG  980

seq1  CATTAATAAGATAGTATTTGAACTTGCTCCTATGTGCTTTGTTAACTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAGATAGTATTTGAACTTGCTCCTATGTGCTTTGTTAACTACT  1030

seq1  GAGATCTATAATCTGACACACACAGCTACAGCTAATGGCATTTGTTTTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTATAATCTGACACACACAGCTACAGCTAATGGCATTTGTTTTAC  1080

seq1  ATTTCTGAGCTCACTTAAATATGTCACCAAGAATTGCACATATCTCATAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGCTCACTTAAATATGTCACCAAGAATTGCACATATCTCATAA  1130

seq1  TACAGATCCAAAATGGGAATTC  1172
      ||||||||||||||||||||||
seq2  TACAGATCCAAAATGGGAATTC  1152

seq1: chr2_176845614_176846762
seq2: B6Ng01-155H18.g_68_1182

seq1  GAATTCCTTACCCACTGGCTCAAGCTAACCTGATCAAATAAAACACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCCACTGGCTCAAGCTAACCTGATCAAATAAAACACCCTT  50

seq1  CAATCTAGGTTTACTAAATTACATCCATACATGGATACAGTCTGTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGTTTACTAAATTACATCCATACATGGATACAGTCTGTAAAAT  100

seq1  TACAAAATCATTCTCAGTCCTTGAATCAGGTCCTTCTCCATAACAGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATCATTCTCAGTCCTTGAATCAGGTCCTTCTCCATAACAGTGAC  150

seq1  CCCTGCAGCACACTCCCTTTTCCTTTGGTCTGTGACCTAGCTCTTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCACACTCCCTTTTCCTTTGGTCTGTGACCTAGCTCTTGTCAG  200

seq1  CACTGTTTTACCTGACAGTGTACACAGTAAGCTGTTCCTCTGGTTCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTACCTGACAGTGTACACAGTAAGCTGTTCCTCTGGTTCTCAT  250

seq1  CCTGCCAAATATATTTCTCCACACAAGCCCCTGACACAAAGGTTTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAATATATTTCTCCACACAAGCCCCTGACACAAAGGTTTTGACA  300

seq1  AGATGCAGTCTTATAATAAAGTTAATCAGAGGCCACAGCTGGGACCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTCTTATAATAAAGTTAATCAGAGGCCACAGCTGGGACCAAAA  350

seq1  GGAGAGAGTAGGTCCACAAAGGACCTCACAGATGTCCCCATCTGTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTAGGTCCACAAAGGACCTCACAGATGTCCCCATCTGTCTGGC  400

seq1  TGATGCTGACAATCCAGCCTCTGGGAAGAGATATTACACAATCATCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGACAATCCAGCCTCTGGGAAGAGATATTACACAATCATCCTTT  450

seq1  GCTAAGATGCTTGCTCCTCCTCTTTGTGGGAGATGACATTGCACTTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATGCTTGCTCCTCCTCTTTGTGGGAGATGACATTGCACTTACCA  500

seq1  TGTCTGAAGTTCTAAGTTTGCCTGAGCTAACCTCACAGCAACCAGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGTTCTAAGTTTGCCTGAGCTAACCTCACAGCAACCAGCAAAA  550

seq1  ATAATAAGAACCGATTCCACAGAAACACTGAGATCAGCTGAGTTACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGAACCGATTCCACAGAAACACTGAGATCAGCTGAGTTACACAG  600

seq1  AGGAACATGCAGGCTTAGTACCTGGAAGAGTCACCTCATCTTCTGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATGCAGGCTTAGTACCTGGAAGAGTCACCTCATCTTCTGACTGG  650

seq1  CAGCTCCATGTGGAGGCTCTAATTCGCTATTGAGTCTTGAGTGAAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCATGTGGAGGCTCTAATTCGCTATTGAGTCTTGAGTGAAGTGAA  700

seq1  CACCAGGCTTAGGGTTAGAGTGTGCTGTAGAGATGCAGGCCAGTGGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTTAGGGTTAGAGTGTGCTGTAGAGATGCAGGCCAGTGGTTCC  750

seq1  AGTCTGGGCCAATCCTTTTCCAGATCTGCAGATTTGCAGTTCAGTAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGCCAATCCTTTTCCAGATCTGCAGATTTGCAGTTCAGTAGCAC  800

seq1  CAGTGTGTCTCCTCCAATAGTCTGTTCCTTCACCAAGCTCTTGGGAGAGG  850
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CAGTGTGTCTCCTCCAATAGTCTGTTCCCTCACCAAGCTTTTGGGAGAGG  850

seq1  CTAAGATTCCTGATCCTTGCTGCCTAAGTGCCTGCCTCTCCCCTTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAAGATTCCTGATCCTTGCTGCCTAAGTGCCTGCCTCT-CCCTTTCTGG  899

seq1  GCAGTGCCCCTGGGTTCACTGCTTTGAAAGTTTGGAGTTTGCCTGAGCTC  950
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  GCAGTGCCCCTGGGTTCACTGCTTTGAA--GTTGGAGTTTGCCTGAGCTC  947

seq1  TAATTCCAGCGCTCAGGAGGCAATTCCCCTTCTTCCTCCTGGAATCAAGG  1000
      ||||||||||||||||   |||  | ||||||||||| |||  ||| |||
seq2  TAATTCCAGCGCTCAG--AGCA--TTCCCTTCTTCCT-CTG--ATC-AGG  989

seq1  TGGATAACTTACATTCCCCCATCAATCAGCTGAAATTGGAGTTACCAAAC  1050
      ||||||   |||||| ||||||| ||||||||||  | |||||| |||||
seq2  TGGATA--CTACATT-CCCCATC-ATCAGCTGAA--TTGAGTTA-CAAAC  1032

seq1  TGTCCACAGGTGGTCAGTGCCCAAATATTAGTAACTGAAGAGATTTTTAG  1100
      ||||||||||  ||||| |||  ||| ||||| |||||| | ||||    
seq2  TGTCCACAGGGTGTCAG-GCC--AAT-TTAGT-ACTGAA-AAATTT----  1072

seq1  GACATAAGATTTTGTGTTGTGGCTTCAGGCTGGGTTCAGGTAAACGGCA  1149
       | |  |||||   || | |||||||| ||||||||||||| |||||||
seq2  -AGACTAGATT---TGGTTTGGCTTCA-GCTGGGTTCAGGT-AACGGCA  1115