BAC Information

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BAC

Clone NameB6Ng01-156C23
Chromosome2 (Build37)
Map Location 79,600,777 - 79,728,227
singlet/doubletdoublet
Overlap genePpp1r1c, Pde1a
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156C23.bB6Ng01-156C23.g
ACCDH950756DH950757
length1,1741,146
definitionDH950756|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C23, 5' end.DH950757|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,727,031 - 79,728,227)(79,600,777 - 79,601,951)
sequence
gaattcatatgaaagaaatggggcattattttacacaactgtgcattctg
aacacactaacgatgtccccataaagagaaatgatgatgaagatgttgag
tgtgacaatgtgtttgcttcctttgctagcactggctcactgaactggaa
attttagccatggtctttgcagctgccattcatgattatgagcacacagg
aacaacaaacaacttccatattcagacgaggtaagtgcaatgaagtctta
gcattaacaagtgaaaacttaaaactgtttttcttaaaaggaccaggcaa
ggaacataactatagtcaaagtacacaataaacgtcaacaaaatgagtgt
ccttctgaaacccattgccttgaacaatggatatatgccaactaaaatga
ttttttacatattttgtattcttaagagaagttgtttagaacatgtagat
tttattaagaatgggtttaacgaattttttttagcaatcctgcttaagct
ttaacaacttaaatccatctactgttctttttcaaaaccttacattttgc
ttgacatagtaacaacttaaagaacatagacgtctgtaggataaattttc
tctgccaaagcttagcctaagtagtcacgtaagttagatatctattcacc
ggggaacataatataataaattgtctaaggcactgttttgagtcacaata
tatgtcataaaaggtacacaattttatttcttaggaaatcaagagattga
agaaatctcattccaggacactaggaagtatttaatataattgaaaaata
agatgctttaatgaaggctaaagtggcagttactcaaaccaaagtactag
agtagacatggattatagtagcctctagggttcctgtaacaaaacaccac
caagtggatggcttaaacaacacgcaattcctttctggcatctgacaata
ctggcagtctggagtctaagactaagtgacagaggagtgttctcttctag
gcccttctcctggctgcaaacagcacctcctgtgtcccaagctggtcttt
tctttctgcataaacccctggtgctcttcctcttcatgacgaccaatgca
tacaggatttggtctaccactaatacctcataatctcaatatacccttat
ggatatattctcatacagtcgcac
gaattcctaagtatcactgtctaaatatcagtatagagttttcaagatgg
ttcttcattgtgagtgctttttatttttcaagacacgtcagttttggcat
gaatagacaacaatgaagatgtatgtgaagttgctcaattatttcctctg
ttctattttgggttagcttaagctaaataaagtagtactgtcctcatgtc
ctcagagaataactatattattttgaaaggaaaatcttaaactcaaaggc
ctaaggggacatggtgttcattatttttagctctcaaatatcccaagaat
gcgggactctagcattcagagaagctggttatattgaagcatttttagta
taactttatactgcggagtccagagattgttcttcaacaactgcagtaat
gagttaaaaagccttaaggatgtatagccattccttcaaggaggcattgg
gcattgatacatataagctagtaaggatctatgtgagttttcagcttatg
ataaaagaaaaagccaaattggtatgatttttctcagtgtatctgttcct
aagagctggaaatgtgtgtgtgaaaaccaatgtaaccaatggtaacctat
ggtctattgtgagcacagagaggagatttaattataggaaagatggctga
acaaagggagtgttcttgagatgcgaaacacattaatacagttgtgccca
aatgaaagttcttcaggctgctgttccatgttacaaaggtgaaggtaggg
tggttttctgggtgtgcaaagcaccagcggaggagatcaacatgagtgaa
gaaaaaaatgtgctctgaggcaaagtgtacaatggctttttgaaggagcc
cgtgaaggagcggctagataaaccaagaaggcagagcctgtcttctcttt
gaggagttactgggtaagagacagacagaagggatgatgacttcacccta
ctcctgccctactaactacagagtatgtacatttttttctttgaattacc
atagtatagacagtaggcttaggaaggcatactgaatgaattctaggtat
cactgtctaattcagtaagggttcagggagtcaggggaggattccagaat
gcaagagaagaacgagacagagcctatgtccattttcaggcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79727031_79728227
seq2: B6Ng01-156C23.b_46_1219 (reverse)

seq1  GTGCGACTGTATTTGGAGATATATATCCATTAAGGGTATAATTGAGATTA  50
      ||||||||||||   |||| ||||||||| ||||||||| ||||||||| 
seq2  GTGCGACTGTAT---GAGA-ATATATCCA-TAAGGGTAT-ATTGAGATT-  43

seq1  AATGAGGTAATGTAAGTGGTAGAACCAAATCCTGTATGCATTGTGTCGTC  100
       ||||||||   | |||||||| |||||||||||||||||||| ||||||
seq2  -ATGAGGTA---TTAGTGGTAG-ACCAAATCCTGTATGCATTG-GTCGTC  87

seq1  ATTTGAAGAGGAAGGAGCACCAGGGGGTTTATGCAGAAAGAAAAGACCAG  150
      |  |||||||||| |||||||| |||||||||||||||||||||||||||
seq2  A--TGAAGAGGAA-GAGCACCA-GGGGTTTATGCAGAAAGAAAAGACCAG  133

seq1  CTTGGGGACACAAGGAGGTTGCTGTTTGCAAGCCAGGGAGAAGGGCCTAG  200
      ||| ||||||| |||||| |||||||||| ||||| ||||||||||||||
seq2  CTT-GGGACAC-AGGAGG-TGCTGTTTGC-AGCCA-GGAGAAGGGCCTAG  178

seq1  AAGAGAACACTCCTCTGTCACCTTAGTCTTAGACTCCAGACTGCCAGTAT  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGAGAACACTCCTCTGTCA-CTTAGTCTTAGACTCCAGACTGCCAGTAT  227

seq1  TGTCAGATGCCAGAAAGGAATTGCGTGTTGTTTAAGCCATCCACTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATGCCAGAAAGGAATTGCGTGTTGTTTAAGCCATCCACTTGGTG  277

seq1  GTGTTTTGTTACAGGAACCCTAGAGGCTACTATAATCCATGTCTACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTTACAGGAACCCTAGAGGCTACTATAATCCATGTCTACTCTA  327

seq1  GTACTTTGGTTTGAGTAACTGCCACTTTAGCCTTCATTAAAGCATCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTGGTTTGAGTAACTGCCACTTTAGCCTTCATTAAAGCATCTTAT  377

seq1  TTTTCAATTATATTAAATACTTCCTAGTGTCCTGGAATGAGATTTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTATATTAAATACTTCCTAGTGTCCTGGAATGAGATTTCTTCA  427

seq1  ATCTCTTGATTTCCTAAGAAATAAAATTGTGTACCTTTTATGACATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGATTTCCTAAGAAATAAAATTGTGTACCTTTTATGACATATAT  477

seq1  TGTGACTCAAAACAGTGCCTTAGACAATTTATTATATTATGTTCCCCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCAAAACAGTGCCTTAGACAATTTATTATATTATGTTCCCCGGT  527

seq1  GAATAGATATCTAACTTACGTGACTACTTAGGCTAAGCTTTGGCAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATATCTAACTTACGTGACTACTTAGGCTAAGCTTTGGCAGAGAA  577

seq1  AATTTATCCTACAGACGTCTATGTTCTTTAAGTTGTTACTATGTCAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCCTACAGACGTCTATGTTCTTTAAGTTGTTACTATGTCAAGCA  627

seq1  AAATGTAAGGTTTTGAAAAAGAACAGTAGATGGATTTAAGTTGTTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGGTTTTGAAAAAGAACAGTAGATGGATTTAAGTTGTTAAAGC  677

seq1  TTAAGCAGGATTGCTAAAAAAAATTCGTTAAACCCATTCTTAATAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGATTGCTAAAAAAAATTCGTTAAACCCATTCTTAATAAAATC  727

seq1  TACATGTTCTAAACAACTTCTCTTAAGAATACAAAATATGTAAAAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTCTAAACAACTTCTCTTAAGAATACAAAATATGTAAAAAATCA  777

seq1  TTTTAGTTGGCATATATCCATTGTTCAAGGCAATGGGTTTCAGAAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTGGCATATATCCATTGTTCAAGGCAATGGGTTTCAGAAGGACA  827

seq1  CTCATTTTGTTGACGTTTATTGTGTACTTTGACTATAGTTATGTTCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGTTGACGTTTATTGTGTACTTTGACTATAGTTATGTTCCTTG  877

seq1  CCTGGTCCTTTTAAGAAAAACAGTTTTAAGTTTTCACTTGTTAATGCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTTTTAAGAAAAACAGTTTTAAGTTTTCACTTGTTAATGCTAA  927

seq1  GACTTCATTGCACTTACCTCGTCTGAATATGGAAGTTGTTTGTTGTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTGCACTTACCTCGTCTGAATATGGAAGTTGTTTGTTGTTCCT  977

seq1  GTGTGCTCATAATCATGAATGGCAGCTGCAAAGACCATGGCTAAAATTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCATAATCATGAATGGCAGCTGCAAAGACCATGGCTAAAATTTC  1027

seq1  CAGTTCAGTGAGCCAGTGCTAGCAAAGGAAGCAAACACATTGTCACACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTGAGCCAGTGCTAGCAAAGGAAGCAAACACATTGTCACACTC  1077

seq1  AACATCTTCATCATCATTTCTCTTTATGGGGACATCGTTAGTGTGTTCAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCATCATCATTTCTCTTTATGGGGACATCGTTAGTGTGTTCAG  1127

seq1  AATGCACAGTTGTGTAAAATAATGCCCCATTTCTTTCATATGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAGTTGTGTAAAATAATGCCCCATTTCTTTCATATGAATTC  1174

seq1: chr2_79600777_79601951
seq2: B6Ng01-156C23.g_64_1209

seq1  GAATTCCTAAGTATCACTGTCTAAATATCAGTATAGAGTTTTCAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTATCACTGTCTAAATATCAGTATAGAGTTTTCAAGATGG  50

seq1  TTCTTCATTGTGAGTGCTTTTTATTTTTCAAGACACGTCAGTTTTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTGTGAGTGCTTTTTATTTTTCAAGACACGTCAGTTTTGGCAT  100

seq1  GAATAGACAACAATGAAGATGTATGTGAAGTTGCTCAATTATTTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACAACAATGAAGATGTATGTGAAGTTGCTCAATTATTTCCTCTG  150

seq1  TTCTATTTTGGGTTAGCTTAAGCTAAATAAAGTAGTACTGTCCTCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTGGGTTAGCTTAAGCTAAATAAAGTAGTACTGTCCTCATGTC  200

seq1  CTCAGAGAATAACTATATTATTTTGAAAGGAAAATCTTAAACTCAAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAATAACTATATTATTTTGAAAGGAAAATCTTAAACTCAAAGGC  250

seq1  CTAAGGGGACATGGTGTTCATTATTTTTAGCTCTCAAATATCCCAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGGACATGGTGTTCATTATTTTTAGCTCTCAAATATCCCAAGAAT  300

seq1  GCGGGACTCTAGCATTCAGAGAAGCTGGTTATATTGAAGCATTTTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGACTCTAGCATTCAGAGAAGCTGGTTATATTGAAGCATTTTTAGTA  350

seq1  TAACTTTATACTGCGGAGTCCAGAGATTGTTCTTCAACAACTGCAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTATACTGCGGAGTCCAGAGATTGTTCTTCAACAACTGCAGTAAT  400

seq1  GAGTTAAAAAGCCTTAAGGATGTATAGCCATTCCTTCAAGGAGGCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAAAGCCTTAAGGATGTATAGCCATTCCTTCAAGGAGGCATTGG  450

seq1  GCATTGATACATATAAGCTAGTAAGGATCTATGTGAGTTTTCAGCTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGATACATATAAGCTAGTAAGGATCTATGTGAGTTTTCAGCTTATG  500

seq1  ATAAAAGAAAAAGCCAAATTGGTATGATTTTTCTCAGTGTATCTGTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAAAGCCAAATTGGTATGATTTTTCTCAGTGTATCTGTTCCT  550

seq1  AAGAGCTGGAAATGTGTGTGTGAAAACCAATGTAACCAATGGTAACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGAAATGTGTGTGTGAAAACCAATGTAACCAATGGTAACCTAT  600

seq1  GGTCTATTGTGAGCACAGAGAGGAGATTTAATTATAGGAAAGATGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATTGTGAGCACAGAGAGGAGATTTAATTATAGGAAAGATGGCTGA  650

seq1  ACAAAGGGAGTGTTCTTGAGATGCGAAACACATTAATACAGTTGTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAGTGTTCTTGAGATGCGAAACACATTAATACAGTTGTGCCCA  700

seq1  AATGAAAGTTCTTCAGGCTGCTGTTCCATGTTACAAAGGTGAAGGTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGTTCTTCAGGCTGCTGTTCCATGTTACAAAGGTGAAGGTAGGG  750

seq1  TGGTTTTCTGGGTGTGCAAAGCACCAGCGGAGGAGATCAACATGAGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTGGGTGTGCAAAGCACCAGCGGAGGAGATCAACATGAGTGAA  800

seq1  GAAAAAAATGTGCTCTGAGGCAAAGTGTACAATGGCTTTTTGAAGGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGTGCTCTGAGGCAAAGTGTACAATGGCTTTTTGAAGGAGCC  850

seq1  CGTGAAGGAGCGGCTAGATAAACCAAGAAGGCAGAGCCTGTCTTCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGGAGCGGCTAGATAAACCAAGAAGGCAGAGCCTGTCTTCTCTTT  900

seq1  GAGGAGTTACTGGGTAAGGAGACAAGACAGAAAGGGATGATGAACTTCAC  950
      ||||||||||||||||| ||||| |||||| ||||||||||| |||||||
seq2  GAGGAGTTACTGGGTAA-GAGAC-AGACAG-AAGGGATGATG-ACTTCAC  946

seq1  CCTACTCCTGCCCTACTAACCTACAGAGTTATGTACATTTTTTTCTTTTG  1000
      ||||||||||||||||||| |||||||| |||||||||||||||||||  
seq2  CCTACTCCTGCCCTACTAA-CTACAGAG-TATGTACATTTTTTTCTTT--  992

seq1  AAATTACCATAGTATAGACAGTAGGCTTAAGAAAGGGCATACTGAAATGA  1050
       |||||||||||||||||||||||||||| |||  ||||||||| |||||
seq2  GAATTACCATAGTATAGACAGTAGGCTTAGGAA--GGCATACTG-AATGA  1039

seq1  ATTCCTAGGTATCACTGTCTAAATATCAGTATAGGGTTTTCAGGGGAGGT  1100
      ||| ||||||||||||||||||   |||||| ||||  |||||||   ||
seq2  ATT-CTAGGTATCACTGTCTAA--TTCAGTA-AGGG--TTCAGGG--AGT  1081

seq1  CAGGGGAGGATTTCCCAGGAAGATGCAAAGAGGAAGACAGGAAGCAGAGC  1150
      ||||||||||||  ||||    |||| |||| ||||| | ||  ||||||
seq2  CAGGGGAGGATT--CCAG---AATGC-AAGA-GAAGA-ACGAGACAGAGC  1123

seq1  CTAATGTCATATTTCCAGGCACAGA  1175
      || |||||  |||| |||||||| |
seq2  CT-ATGTC-CATTTTCAGGCACACA  1146