BAC Information

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BAC

Clone NameB6Ng01-156G16
Chromosome2 (Build37)
Map Location 73,549,264 - 73,686,964
singlet/doubletdoublet
Overlap geneAtf2
Upstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156G16.bB6Ng01-156G16.g
ACCDH950926DH950927
length1,096843
definitionDH950926|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G16, 5' end.DH950927|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,685,859 - 73,686,964)(73,549,264 - 73,550,122)
sequence
gaattcttggaagcaaaggcacatactccctttcattagatttcccaaaa
tcacaatttttaatggttatacttgattattgccttagatatatttaatt
atccccttatttcttaacatacggtcatttccacatttattatagttatt
aaggatcctgagaacagccttatttccctgcagagcatccctttcccttt
atattttccagttttcattcttgtggctagtttatcaccttctaggggtg
ctgcttctgcattccttagtcattaatttcttttaggtagtacatagatc
cactaagttgtggaaaatcagttcgggacctcctctgttctaattttctt
tttagggatttccatcaagaattgtaatagaaactataaattagtaattc
ccaaatttacatcagccaaggtatctctcctgattgctgaatacagtttc
tctgttgtcatctcctttactttgtctagggaacatctcagtatgtctga
aactaagcccttaattctgtcctcatttttctcctctgagaaaattttct
ctacccatgcatggtggtagtatgtccttgtaattcctgcactaggaagg
tagtgtcaggagtattgcacattcaaggctagcctgtactgctaaaactt
tctgggctatgtagcaagacctgcctctcatttccaatacccttcctgca
ccttccaacaaaaaaaagaaagggaaatgtgcatctatctacttatttaa
gcaaagcatttaggtgtcacctttagttctatattttctaccttgacttt
gaaaccaatagcaaatcttcatttaccaagcatgttttgaataagttcat
accacttttgtgttcagtgtaattgtcttagctgtcatctatcagttgta
ccactactacccggcttctctctctctccctactccagtgctgagatggc
atgagagccccaagcacgcacttagactactgagggttccccttcctcta
tttttctgcaaacacaaagtttcttatgtttcccagctagtttcatataa
tattctctggttgagtttccccaggttgctgggactgtatgcatgc
gaattcaggtcatcaggcttggccacaggtgcctttatcctctgagccat
cttggccttatttattttttatgtgcagaggacatatcactgaattaaaa
ccaaaattatcctattttgaaaatacattgccagggctactcagagaaag
cctctctcaaaaaaaaacaaaaagaaagaaagaaagaaagaaagaaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaaaaaagaaagaaaggacattgtaaggattagaaacaca
caataatactggttttgttgttgtccgtcttttaagtgataagaacaaca
gaaaataaaggagtagtaagtggtctaaaggcaataagaggagactaata
tgttagctataagttggtggtcagaaaaaaccattctgagatgatattta
agtcggttcctgaacaaaaacctagctcagaatcacagcaatggaaaggc
cttttcctatgagataatctaggttcgagggaatccgctatttgcttatg
ttttaattacatttaaagatcatttactctccacaataagggtaagaatg
attctactctgactttgtaaagaattttatcatttccagtttttaacttg
ttttcatggtaagtttaattgatgaaacatatatattatatattaatatc
tgtgtgtatatcactatacatcatgtactgatatgtgttattgtggatga
ctacataattacatgcactactcacagactaaatctgtattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73685859_73686964
seq2: B6Ng01-156G16.b_44_1139 (reverse)

seq1  GCATGCATACAGTCCCAGCAACCTGGGGAAACTCACACAGAGGATTATTA  50
      |||||||||||||||||||||||||||||||||||  |||| || |||| 
seq2  GCATGCATACAGTCCCAGCAACCTGGGGAAACTCAACCAGA-GAATATT-  48

seq1  ATATGAAACTAGCTTGGGAAACATAAAGAAACTTTGTGTTTTGCAAGAAA  100
      ||||||||||||| |||||||||| ||||||||||||| ||||| |||||
seq2  ATATGAAACTAGC-TGGGAAACAT-AAGAAACTTTGTG-TTTGC-AGAAA  94

seq1  AATAGAGGGAAGGGGAACCCTCAGTAGTCTTAAGTGCGTGCTTGGGGCTC  150
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  AATAGA-GGAAGGGGAACCCTCAGTAGTC-TAAGTGCGTGCTTGGGGCTC  142

seq1  TCATGCCATTCTCAGCACTGGAGTAGGGAGAGAGAGAGAAGCCGGGTAGT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCA-TCTCAGCACTGGAGTAGGGAGAGAGAGAGAAGCCGGGTAGT  191

seq1  AGTGGTACAACTGATAGATGACAGCTAAGACAATTACACTGAACACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACAACTGATAGATGACAGCTAAGACAATTACACTGAACACAAAA  241

seq1  GTGGTATGAACCTTATTCAAAACATGCTTGGTAAATGAAGATTTGCTATT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATGAA-CTTATTCAAAACATGCTTGGTAAATGAAGATTTGCTATT  290

seq1  GGTTTCAAAGTCAAGGTAGAAAATATAGAACTAAAGGTGACACCTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAAGTCAAGGTAGAAAATATAGAACTAAAGGTGACACCTAAATG  340

seq1  CTTTGCTTAAATAAGTAGATAGATGCACATTTCCCTTTCTTTTTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTAAATAAGTAGATAGATGCACATTTCCCTTTCTTTTTTTTGTT  390

seq1  GGAAGGTGCAGGAAGGGTATTGGAAATGAGAGGCAGGTCTTGCTACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGCAGGAAGGGTATTGGAAATGAGAGGCAGGTCTTGCTACATAG  440

seq1  CCCAGAAAGTTTTAGCAGTACAGGCTAGCCTTGAATGTGCAATACTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGTTTTAGCAGTACAGGCTAGCCTTGAATGTGCAATACTCCTG  490

seq1  ACACTACCTTCCTAGTGCAGGAATTACAAGGACATACTACCACCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCTTCCTAGTGCAGGAATTACAAGGACATACTACCACCATGCAT  540

seq1  GGGTAGAGAAAATTTTCTCAGAGGAGAAAAATGAGGACAGAATTAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGAAAATTTTCTCAGAGGAGAAAAATGAGGACAGAATTAAGGGC  590

seq1  TTAGTTTCAGACATACTGAGATGTTCCCTAGACAAAGTAAAGGAGATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCAGACATACTGAGATGTTCCCTAGACAAAGTAAAGGAGATGAC  640

seq1  AACAGAGAAACTGTATTCAGCAATCAGGAGAGATACCTTGGCTGATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACTGTATTCAGCAATCAGGAGAGATACCTTGGCTGATGTAA  690

seq1  ATTTGGGAATTACTAATTTATAGTTTCTATTACAATTCTTGATGGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAATTACTAATTTATAGTTTCTATTACAATTCTTGATGGAAATC  740

seq1  CCTAAAAAGAAAATTAGAACAGAGGAGGTCCCGAACTGATTTTCCACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAGAAAATTAGAACAGAGGAGGTCCCGAACTGATTTTCCACAAC  790

seq1  TTAGTGGATCTATGTACTACCTAAAAGAAATTAATGACTAAGGAATGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGATCTATGTACTACCTAAAAGAAATTAATGACTAAGGAATGCAG  840

seq1  AAGCAGCACCCCTAGAAGGTGATAAACTAGCCACAAGAATGAAAACTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCACCCCTAGAAGGTGATAAACTAGCCACAAGAATGAAAACTGGA  890

seq1  AAATATAAAGGGAAAGGGATGCTCTGCAGGGAAATAAGGCTGTTCTCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGGGAAAGGGATGCTCTGCAGGGAAATAAGGCTGTTCTCAGG  940

seq1  ATCCTTAATAACTATAATAAATGTGGAAATGACCGTATGTTAAGAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAATAACTATAATAAATGTGGAAATGACCGTATGTTAAGAAATAA  990

seq1  GGGGATAATTAAATATATCTAAGGCAATAATCAAGTATAACCATTAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAATTAAATATATCTAAGGCAATAATCAAGTATAACCATTAAAAA  1040

seq1  TTGTGATTTTGGGAAATCTAATGAAAGGGAGTATGTGCCTTTGCTTCCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTGGGAAATCTAATGAAAGGGAGTATGTGCCTTTGCTTCCAA  1090

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1096

seq1: chr2_73549264_73550122
seq2: B6Ng01-156G16.g_66_908

seq1  GAATTCAGGTCATCAGGCTTGGCCACAGGTGCCTTTATCCTCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATCAGGCTTGGCCACAGGTGCCTTTATCCTCTGAGCCAT  50

seq1  CTTGGCCTTATTTATTTTTTATGTGCAGAGGACATATCACTGAATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTTATTTATTTTTTATGTGCAGAGGACATATCACTGAATTAAAA  100

seq1  CCAAAATTATCCTATTTTGAAAATACATTGCCAGGGCTACTCAGAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTATCCTATTTTGAAAATACATTGCCAGGGCTACTCAGAGAAAG  150

seq1  CCTCTCTCAAAAAAAAACAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAAAAAAAAACAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  200

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  250

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAAAAAGAAAGAAAGGACATTGTAAGGATTAGAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAAAAAGAAAGAAAGGACATTGTAAGGATTAGAAACACA  350

seq1  CAATAATACTGGTTTTGTTGTTGTCCGTCTTTTAAGTGATAAGAACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATACTGGTTTTGTTGTTGTCCGTCTTTTAAGTGATAAGAACAACA  400

seq1  GAAAATAAAGGAGTAGTAAGTGGTCTAAAGGCAATAAGAGGAGACTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGGAGTAGTAAGTGGTCTAAAGGCAATAAGAGGAGACTAATA  450

seq1  TGTTAGCTATAAGTTGGTGGTCAGAAAAAACCATTCTGAGATGATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTATAAGTTGGTGGTCAGAAAAAACCATTCTGAGATGATATTTA  500

seq1  AGTCGGTTCCTGAACAAAAACCTAGCTCAGAATCACAGCAATGGAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTTCCTGAACAAAAACCTAGCTCAGAATCACAGCAATGGAAAGGC  550

seq1  CTTTTCCTATGAGATAATCTAGGTTCGAGGGAATCCCGCTATTTGCTTAT  600
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTTCCTATGAGATAATCTAGGTTCGAGGGAAT-CCGCTATTTGCTTAT  599

seq1  GTTTTAATTACATTTAAAGATCATTTACTCTCCACAATAA-GGTAAGAAT  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTTAATTACATTTAAAGATCATTTACTCTCCACAATAAGGGTAAGAAT  649

seq1  GATTCTACTCTGACTTTGTAAAAGAATTTTATCATTTCCAGTTTTTAACT  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATTCTACTCTGACTTTGT-AAAGAATTTTATCATTTCCAGTTTTTAACT  698

seq1  TGTTTTTCATGGTAAAGTTTTAATTGATGAAAACATATATATTATATAAT  749
      || ||||||||||||   ||||||||||| ||||||||||||||||| ||
seq2  TG-TTTTCATGGTAA--GTTTAATTGATG-AAACATATATATTATAT-AT  743

seq1  TAATATCTGTGTGTATTATCACTTATAACATCATGTACTGATATGTGTTT  799
      ||||||||||||||| |||||| ||| |||||||||||||||||||| ||
seq2  TAATATCTGTGTGTA-TATCAC-TAT-ACATCATGTACTGATATGTG-TT  789

seq1  ATTGTGGAATGACTAACATAATTAACATGCACTACCTCACAGACTTAAAA  849
      ||||||| |||||| |||||||| |||||||||| ||||||||||  |||
seq2  ATTGTGG-ATGACT-ACATAATT-ACATGCACTA-CTCACAGACT--AAA  833

seq1  TCTGTATTCT  859
      ||||||||||
seq2  TCTGTATTCT  843