BAC Information

Click to search

BAC

Clone NameB6Ng01-156H20
Chromosome2 (Build37)
Map Location 144,779,046 - 144,897,834
singlet/doubletdoublet
Overlap genenone
Upstream geneRrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H20.bB6Ng01-156H20.g
ACCDH950980DH950981
length238903
definitionDH950980|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H20, 5' end.DH950981|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,779,046 - 144,779,283)(144,897,297 - 144,897,834)
sequence
tatccaaattcaagtctgaaagtcttgatgttccttctgttctttagttc
ttcaatgttattacccactgctttcctccttgtatggtttttgacaaaaa
gttgtaattatttttatttcttctttccttcttttctctgcctccaaggt
atcatttttcagcctaaacagttctctctgtttgtgcatgtcggagtgga
tctgtggtaatgtatatttgtgtgtttgtgtgtgtgtg
gaattcaatttgcaagtcttttattgagaatttttgcatgtacattcacc
cagtagattggtctgaaattttctttctttgatgtggtctgacccagtat
tggttccagggtaatcctggctctgtcaaatgagcttggtcatgttcctt
ctctttctggtttgtgaaatactttgaaggacatcagtgtttgttcttct
ctaaaggtctggtaaaatccaactgtgagcccatctgcatccagacattt
ttttgttgggagacattttattactgtttcaatgacattgctcattatag
atttgtttaaatttttatattctatttcatttatattctctaatttattg
gaagataggttttcaaaccttccttatgagcattctgaattccattggta
ttgctgtatcatcttccacatcatttcaatcttatttccttctgggctta
tctaagaatgaagtttgggaaacttgtttgtcttttcaaagaagggatct
tttgtttccctggttcttcatttgggtttattattattagctagtttcac
caacttctacactaatatttattatttctttttgttttgggttttttttt
ttttttggtttgtttggttggtctttttcgagacagggtttctctgtata
gccctggctgtcctggaactcactttgtagaccaggctggacttgaactc
acaaatccacctgcatctgcctcccaagtgctgggattaaaggcgcatgc
caccaccgcccagcatatttattattttcttaccacattctaatttgagt
tttggtttgttcatatcttttctaaactgtgagtagcaccattaagtaat
ttacttgacatcactttggtgtgtgtgtgtgtgtgcatgtgaagagggag
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144779046_144779283
seq2: B6Ng01-156H20.b_53_290

seq1  TATCCAAATTCAAGTCTGAAAGTCTTGATGTTCCTTCTGTTCTTTAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAATTCAAGTCTGAAAGTCTTGATGTTCCTTCTGTTCTTTAGTTC  50

seq1  TTCAATGTTATTACCCACTGCTTTCCTCCTTGTATGGTTTTTGACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTATTACCCACTGCTTTCCTCCTTGTATGGTTTTTGACAAAAA  100

seq1  GTTGTAATTATTTTTATTTCTTCTTTCCTTCTTTTCTCTGCCTCCAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATTATTTTTATTTCTTCTTTCCTTCTTTTCTCTGCCTCCAAGGT  150

seq1  ATCATTTTTCAGCCTAAACAGTTCTCTCTGTTTGTGCATGTCGGAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTCAGCCTAAACAGTTCTCTCTGTTTGTGCATGTCGGAGTGGA  200

seq1  TCTGTGGTAATGTATATTTGTGTGTTTGTGTGTGTGTG  238
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTAATGTATATTTGTGTGTTTGTGTGTGTGTG  238

seq1: chr2_144897297_144897834
seq2: B6Ng01-156H20.g_428_968 (reverse)

seq1  TCCCTCCCTC-TCACATGCACACACACACACACACCAAAGTGATGTCAAG  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCTTCACATGCACACACACACACACACCAAAGTGATGTCAAG  50

seq1  TAAATTACTTAATGGTGCTACTCACAGTTTAG-AAAGATATGAACAAACC  98
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAATTACTTAATGGTGCTACTCACAGTTTAGAAAAGATATGAACAAACC  100

seq1  AAAACTCAAATTAGAATGTGGTAAG-AAATAATAAATATGCTGGGCGGTG  147
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAACTCAAATTAGAATGTGGTAAGAAAATAATAAATATGCTGGGCGGTG  150

seq1  GTGGCATGCGCCTTTAATCCCAGCACTTGGGAGGCAGATGCAGGTGGATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGCGCCTTTAATCCCAGCACTTGGGAGGCAGATGCAGGTGGATT  200

seq1  TGTGAGTTCAAGTCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCAAGTCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  250

seq1  GGCTATACAGAGAAACCCTGTCTCGAAAAAGACCAACCAAACAAACCAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAGAAACCCTGTCTCGAAAAAGACCAACCAAACAAACCAAA  300

seq1  AAAAAAAAAAAACCCAAAACAAAAAGAAATAATAAATATTAGTGTAGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACCCAAAACAAAAAGAAATAATAAATATTAGTGTAGAAG  350

seq1  TTGGTGAAACTAGCTAATAATAATAAACCCAAATGAAGAACCAGGGAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAACTAGCTAATAATAATAAACCCAAATGAAGAACCAGGGAAAC  400

seq1  AAAAGATCCCTTCTTTGAAAAGACAAACAAGTTTCCCAAACTTCATTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCCCTTCTTTGAAAAGACAAACAAGTTTCCCAAACTTCATTCTT  450

seq1  AGATAAGCCCAGAAGGAAATAAGATTGAAATGATGTGGAAGATGATACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCCCAGAAGGAAATAAGATTGAAATGATGTGGAAGATGATACAG  500

seq1  CAATACCAATGGAATTCAGAATGCTCATAAGGAAGGTTTGA  538
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAATGGAATTCAGAATGCTCATAAGGAAGGTTTGA  541