BAC Information

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BAC

Clone NameB6Ng01-156J17
Chromosome2 (Build37)
Map Location 84,841,490 - 85,010,066
singlet/doubletdoublet
Overlap geneP2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3
Downstream geneLrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156J17.bB6Ng01-156J17.g
ACCDH951065DH951066
length2481,068
definitionDH951065|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J17, 5' end.DH951066|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,009,819 - 85,010,066)(84,841,490 - 84,842,565)
sequence
gaattcactgatggctcaagaacaattagcagcctcttcctccaggaagc
atacctgcacctccttagccatacttaaggctctgtctttgtgcctccac
atccccaccccaagtaccccgtagcactctgctcagtacataacactaag
tgtttatgtttctgaatctgtctcccctaccaggctataggctgctcaac
caaagtgacctagttttacatctcaggttgtgtgtgtgtgtgtgtgtg
gaattcaggccttcatgcttgagcaacaagtatactctacccactgagcc
atctctgaaaacctctctccccaagatttttatgagcataaaagcttgga
ctgcagctgaccacagctggctctaggcttcttcaggtctacttgcttgg
gtatcacaggacccaactttaacctactcgggctcagaacctgactcata
gaaccatgtgccagcaatttagccttcctgagactcagcggccacagctt
gagcggcaatagtcctgcaccgcagggttgctgtgagagtcaaaagcaca
cgggtcagtgctggagagcagccctgggcactggaaacatttcctgcggt
tggccattgttatttgctgaagaattatgtttatatataactgagaaaag
tgtttccggatccctcaccgcctgctaccctcgactgcgtcccatggcga
agggaaacaattcatacttttcagaggatgctctgcgaggttacatgact
catgcaggacttcccactggaactcggcctacatctgccccagtcctttg
ctcagtcctttgctcctcagttgtggctgctgggtactttgggatgagct
ggggacttagaggaatgatcacatttcattctccccctggactcaggtgg
cacccacacagaagggtggcactcaccccattttgcagatgcctatggca
gggaagggagttgcctgtggctttgcagctcctaagtgctggtcttggaa
ctggaattgcattggacttctggactctaaatcaatatgctctccttatg
cggctctgccttcacgggccagtactaaggcagaattccactactgtgaa
atggcttttctgatgtcaggactaagtagtgtaatggaaataagagttcc
ggaaggctgggcagtggtggcacaacacctttaatccagcattctgagct
gggaggacctctgtgagcttcagacctgcttctctacagagctagtctca
gataacgaagctacacaaagaaatccttgtgcaaaagggttggggaggac
gacagccagccacagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85009819_85010066
seq2: B6Ng01-156J17.b_41_288 (reverse)

seq1  CACACACACACACACACACAACCTGAGATGTAAAACTAGGTCACTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAACCTGAGATGTAAAACTAGGTCACTTTGGT  50

seq1  TGAGCAGCCTATAGCCTGGTAGGGGAGACAGATTCAGAAACATAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCTATAGCCTGGTAGGGGAGACAGATTCAGAAACATAAACACT  100

seq1  TAGTGTTATGTACTGAGCAGAGTGCTACGGGGTACTTGGGGTGGGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTATGTACTGAGCAGAGTGCTACGGGGTACTTGGGGTGGGGATGT  150

seq1  GGAGGCACAAAGACAGAGCCTTAAGTATGGCTAAGGAGGTGCAGGTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAAAGACAGAGCCTTAAGTATGGCTAAGGAGGTGCAGGTATGC  200

seq1  TTCCTGGAGGAAGAGGCTGCTAATTGTTCTTGAGCCATCAGTGAATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGGAAGAGGCTGCTAATTGTTCTTGAGCCATCAGTGAATTC  248

seq1: chr2_84841490_84842565
seq2: B6Ng01-156J17.g_66_1133

seq1  GAATTCAGGCCTTCATGCTTGAGCAACAAGTATACTCTACCCACTGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCTTCATGCTTGAGCAACAAGTATACTCTACCCACTGAGCC  50

seq1  ATCTCTGAAAACCTCTCTCCCCAAGATTTTTATGAGCATAAAAGCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAAAACCTCTCTCCCCAAGATTTTTATGAGCATAAAAGCTTGGA  100

seq1  CTGCAGCTGACCACAGCTGGCTCTAGGCTTCTTCAGGTCTACTTGCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGACCACAGCTGGCTCTAGGCTTCTTCAGGTCTACTTGCTTGG  150

seq1  GTATCACAGGACCCAACTTTAACCTACTCGGGCTCAGAACCTGACTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAGGACCCAACTTTAACCTACTCGGGCTCAGAACCTGACTCATA  200

seq1  GAACCATGTGCCAGCAATTTAGCCTTCCTGAGACTCAGCGGCCACAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGTGCCAGCAATTTAGCCTTCCTGAGACTCAGCGGCCACAGCTT  250

seq1  GAGCGGCAATAGTCCTGCACCGCAGGGTTGCTGTGAGAGTCAAAAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGCAATAGTCCTGCACCGCAGGGTTGCTGTGAGAGTCAAAAGCACA  300

seq1  CGGGTCAGTGCTGGAGAGCAGCCCTGGGCACTGGAAACATTTCCTGCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAGTGCTGGAGAGCAGCCCTGGGCACTGGAAACATTTCCTGCGGT  350

seq1  TGGCCATTGTTATTTGCTGAAGAATTATGTTTATATATAACTGAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTGTTATTTGCTGAAGAATTATGTTTATATATAACTGAGAAAAG  400

seq1  TGTTTCCGGATCCCTCACCGCCTGCTACCCTCGACTGCGTCCCATGGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCGGATCCCTCACCGCCTGCTACCCTCGACTGCGTCCCATGGCGA  450

seq1  AGGGAAACAATTCATACTTTTCAGAGGATGCTCTGCGAGGTTACATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAATTCATACTTTTCAGAGGATGCTCTGCGAGGTTACATGACT  500

seq1  CATGCAGGACTTCCCACTGGAACTCGGCCTACATCTGCCCCAGTCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGACTTCCCACTGGAACTCGGCCTACATCTGCCCCAGTCCTTTG  550

seq1  CTCAGTCCTTTGCTCCTCAGTTGTGGCTGCTGGGTACTTTGGGATGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCTTTGCTCCTCAGTTGTGGCTGCTGGGTACTTTGGGATGAGCT  600

seq1  GGGGACTTAGAGGAATGATCACATTTCATTCTCCCCCTGGACTCAGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTAGAGGAATGATCACATTTCATTCTCCCCCTGGACTCAGGTGG  650

seq1  CACCCACACAGAAGGGTGGCACTCACCCCATTTTGCAGATGCCTATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACAGAAGGGTGGCACTCACCCCATTTTGCAGATGCCTATGGCA  700

seq1  GGGAAGGGAGTTGCCTGTGGCTTTGCAGCTCCTAAGTGCTGGTCTTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGTTGCCTGTGGCTTTGCAGCTCCTAAGTGCTGGTCTTGGAA  750

seq1  CTGGAATTGCATTGGACTTCTGGACTCTAAATCAAATATGCTCTCCTTAT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGAATTGCATTGGACTTCTGGACTCTAAATC-AATATGCTCTCCTTAT  799

seq1  GCGGCTCTGCCTTCACGGGCCAGTACTAAGGCAGAATTCCACTACTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCTGCCTTCACGGGCCAGTACTAAGGCAGAATTCCACTACTGTGA  849

seq1  AATGGC-TTTCTGATGTCAGGACTAAGTAGTGTAATGGAAATAAGAGTTC  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTTCTGATGTCAGGACTAAGTAGTGTAATGGAAATAAGAGTTC  899

seq1  CGGAAGGCTGGGCAGTGGTGGCAC-ACACCTTTAATTCCAGCATTCTGGA  948
      |||||||||||||||||||||||| |||||||||| ||||||||||| ||
seq2  CGGAAGGCTGGGCAGTGGTGGCACAACACCTTTAA-TCCAGCATTCT-GA  947

seq1  GCTGGGAGGACCTCTGTGAGCTCCAGACCTGCCTCCTCTACAGAGCTAGT  998
      |||||||||||||||||||||| |||||||| || |||||||||||||||
seq2  GCTGGGAGGACCTCTGTGAGCTTCAGACCTG-CTTCTCTACAGAGCTAGT  996

seq1  CTCAGGATAACGAAGGCTACACAAAGAAACCCTGTTGCAGAGAGGGGTTG  1048
      |||| ||||||||| |||||||||||||| |||  |||  | | ||||||
seq2  CTCA-GATAACGAA-GCTACACAAAGAAATCCTTGTGC--AAAAGGGTTG  1042

seq1  GGGAGGACAGACAGCCAGCCAACAGACA  1076
      |||||||| ||||||||||| |||||||
seq2  GGGAGGAC-GACAGCCAGCC-ACAGACA  1068