BAC Information

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BAC

Clone NameB6Ng01-157A01
Chromosome2 (Build37)
Map Location 50,168,373 - 50,169,478
singlet/doubletsinglet
Overlap genenone
Upstream geneMbd5, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A01.bB6Ng01-157A01.g
ACCDH951352DH951353
length9061,095
definitionDH951352|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A01, 5' end.DH951353|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggattgttttttctaattctgtgaagagcattgtgggtactc
tcactaggatggtattgaatctatccacttcttttagtaggatgaccatt
ttcgcagtataaattctaccagtccatggacatgggatccatttcaattt
tctagcatctttctcgacctctttcattagaaatttaaggttttcatcgt
agagttgtttgaccttcttggttaggtttattttgagatattttattgtc
cttaatgctatattaaattgttgtatctccatgatgtctttctcagtgtg
gctgttgttagtgtttagaaaggctactacatattgtagattgttttttt
ttttatgctaacagtttcctgaaattaattgttctagaaatgtaaacaac
ctgagggttcttcagttgaggcatacatatactcagtagaacactcttca
gctgagttttggggatactttatgtataatatcatataccatctgccact
gggaataatttaatttcttcttttcctattgtgtcacttctatgtcttgc
cttgttgctccagctagagtttccaatgctatactgaaaaagagtaagga
tggtggtcagtactgtctcattcctgattttcagagaattgcttcaagtg
tttctccatttgggattatgtaggctgtaggtttgtcatataaagtcttt
attatgttgtgctatgttcttagtccaactctttccgggacttttatttt
tgaaatttcaatgtaattataacattttcccttacataacctctctccaa
atacccacccacacatacccctcatgctctccttcaaattcatggcctct
ttttttcataaattattattatatacttatatgtatgtgtatattatatg
tatgta

gaattcactgctgatctctgcctccagagggctgggattaaaggcgtgta
ccaccacacccaacactacattttgatattgttttcattttcacttaata
cagatatttcctgttttctcttattatttcttatttcctgtgagttattc
tacttagaagtataattcattttcaattatttgaagactatttccaacta
cctctctgttgacttccagtttaagtattttgtagaaagagaacacagtt
tgtatattcttacttctatatttacttagacttagtttatatattgagtt
catgaacctttgatgtgttcttgaaaggtttgtgtgttctatgtcatttc
attaagatagttgatggtgttaatcaaggtttctttgttttgttttgttt
tgttttttgcttttccgaacatttgacttctatgacttcttattttatta
actattgagaagtgtcagtcttcaagactaatggtaacctctcaaagggt
tcccaatatttagtaggcatttctattaaatgactaaaactttacacaca
cacacacacacacacacacacacacacacacacacacacacaatgctttc
ccttaattatgagtgcattttaaaaataacttttaaaggtttatttcctt
ttagtttttatgtgtctgagtgctttatgtgcatatgtgtatacgtacca
tgtttgttcctggtgcctggtaatctgaggctcaagatagttgatttggc
gacagagttggtacatgtgcagtttgggcctgctgggcagagggactcct
gtctgagcaggacagagtaggacagtatgagattcatgataccactcatg
acatgtagtttacttctgaaaaattccatttaatattttcagctcataac
tgtggttaattgaaactgaagatagtgaaactaatagctattctataagg
gagttatccaagtttcttaattcagccaattttacaattgtaacttgtag
tctttataggtattctactcaggctccatacaataataaagaagtactgg
ccacacatagtgctcagtcccgacgaacttatgaatcctaaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50168373_50169478
seq2: B6Ng01-157A01.g_69_1163

seq1  GAATTCACTGCTGATCTCTGCCTCCAGAGGGCTGGGATTAAAGGCGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGATCTCTGCCTCCAGAGGGCTGGGATTAAAGGCGTGTA  50

seq1  CCACCACACCCAACACTACATTTTGATATTGTTTTCATTTTCACTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCCAACACTACATTTTGATATTGTTTTCATTTTCACTTAATA  100

seq1  CAGATATTTCCTGTTTTCTCTTATTATTTCTTATTTCCTGTGAGTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTCCTGTTTTCTCTTATTATTTCTTATTTCCTGTGAGTTATTC  150

seq1  TACTTAGAAGTATAATTCATTTTCAATTATTTGAAGACTATTTCCAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAAGTATAATTCATTTTCAATTATTTGAAGACTATTTCCAACTA  200

seq1  CCTCTCTGTTGACTTCCAGTTTAAGTATTTTGTAGAAAGAGAACACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTTGACTTCCAGTTTAAGTATTTTGTAGAAAGAGAACACAGTT  250

seq1  TGTATATTCTTACTTCTATATTTACTTAGACTTAGTTTATATATTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTCTTACTTCTATATTTACTTAGACTTAGTTTATATATTGAGTT  300

seq1  CATGAACCTTTGATGTGTTCTTGAAAGGTTTGTGTGTTCTATGTCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCTTTGATGTGTTCTTGAAAGGTTTGTGTGTTCTATGTCATTTC  350

seq1  ATTAAGATAGTTGATGGTGTTAATCAAGGTTTCTTTGTTTTGTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATAGTTGATGGTGTTAATCAAGGTTTCTTTGTTTTGTTTTGTTT  400

seq1  TGTTTTTTGCTTTTCCGAACATTTGACTTCTATGACTTCTTATTTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGCTTTTCCGAACATTTGACTTCTATGACTTCTTATTTTATTA  450

seq1  ACTATTGAGAAGTGTCAGTCTTCAAGACTAATGGTAACCTCTCAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGAGAAGTGTCAGTCTTCAAGACTAATGGTAACCTCTCAAAGGGT  500

seq1  TCCCAATATTTAGTAGGCATTTCTATTAAATGACTAAAACTTTACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATATTTAGTAGGCATTTCTATTAAATGACTAAAACTTTACACACA  550

seq1  CACACACACACACACACACACACACACACACACACACACACAATGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACAATGCTTTC  600

seq1  CCTTAATTATGAGTGCATTTTAAAAATAACTTTTAAAGGTTTATTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTATGAGTGCATTTTAAAAATAACTTTTAAAGGTTTATTTCCTT  650

seq1  TTAGTTTTTATGTGTCTGAGTGCTTTATGTGCATATGTGTATACGTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTATGTGTCTGAGTGCTTTATGTGCATATGTGTATACGTACCA  700

seq1  TGTTTGTTCCTGGTGCCTGGTAATCTGAGGCTCAAGATAGTTGATTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCCTGGTGCCTGGTAATCTGAGGCTCAAGATAGTTGATTTGGC  750

seq1  GACAGAGTTGGTACATGTGCAGTTTGGGCCTGCTGGGCAGAGGGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTGGTACATGTGCAGTTTGGGCCTGCTGGGCAGAGGGACTCCT  800

seq1  GTCTGAGCAGGACAGAGTAGGACAGTATGAGATTTCATGATACCACTCAT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTGAGCAGGACAGAGTAGGACAGTATGAGA-TTCATGATACCACTCAT  849

seq1  GACATGTAGTTTACTTCTGAAAAATTCCATTTAATATTTTCAGCTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAGTTTACTTCTGAAAAATTCCATTTAATATTTTCAGCTCATAA  899

seq1  CTGTGGTTAATTGAAACTGAAGATAGTGAAACTAATAGCTATTCTATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTGGTTAATTGAAACTGAAGATAGTGAAACTAATAGCTATTCTAT-AA  948

seq1  GGGAGTTATCCAAGTTTCTTAATTCAGCCAATTTTACAAATTGTAACCTT  1000
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GGGAGTTATCCAAGTTTCTTAATTCAGCCAATTTTAC-AATTGTAA-CTT  996

seq1  GTAGTTCTTTTATTAGGTATTCTACTCAGGCTCCCATACCAAATAATACA  1050
      |||| |||||   ||||||||||||||||||| ||||||  ||||||| |
seq2  GTAG-TCTTT--ATAGGTATTCTACTCAGGCT-CCATAC--AATAATAAA  1040

seq1  G-AGTACTGGCAACACATAAGTGCTCAGTCCCGACGATCTTACTGAATCC  1099
      | ||||||||| |||||| |||||||||||||||||| |||| |||||||
seq2  GAAGTACTGGCCACACAT-AGTGCTCAGTCCCGACGAACTTA-TGAATCC  1088

seq1  TAACCAT  1106
      |||||||
seq2  TAACCAT  1095


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