BAC Information

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BAC

Clone NameB6Ng01-157A18
Chromosome2 (Build37)14 (Build37)
Map Location 145,829,632 - 145,830,18211,627,174 - 11,628,334
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A18.bB6Ng01-157A18.g
ACCDH951386DH951387
length9991,135
definitionDH951386|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A18, 5' end.DH951387|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,829,632 - 145,830,182)(11,627,174 - 11,628,334)
sequence
gaattcatcttggaatattttacctttgatgagtatgaagtgtccctcct
tgtcttttttgataactttgggttggaagtcgatttaattcgatattaga
atggctactccagttttttcttcggaccatttgcttggaaaatcattttc
cacccttttactctgaggtagtgtctgtctttgtccctgaggtgggtttc
ctgtattcagcaaaatgttgggtcctttttatgttgccagtctgttagcc
tatgtctttttattggagagttgtgtccattaatattaagacatattagt
gaaaagtaattgctgctttctgttatttttgttgttaaaattggaattct
gctcttgagactatcttctttttggttccttgaaggattactttcttgct
ttttcttgggcataatttccctccttgtgttggtgttttccctttattat
cctttgaagggctgaattcgtggaaagatatgtgtaaatttgattttgtc
atggaatactttgggttctccatctatggtaattgagagtttggctgggt
atagtagcctgggctggcatttgtgtcctcttaggttatatataaaacat
ctgtccaggatcttctggctttcatagtctctggtgagaattcttgtata
attctaataggtctgcctttatatgttacttgacttttttcccttattgc
ttttaatattctatctttatttagtgcatttgttgttctgattattatgt
gttggaagaatttcttttctggtccagtctatttagagttctgtaggctt
ctcatatgttcatgggcatttctatctttaggttagggaagttttcttct
ataattttgttgaagatatttgctggccctttaagttgaaaatcttcatt
ctcatctactcctattataataagtttgtcttctcattgtgtcctagatt
tcctggggtgttttgagtcagcatctttttgcatttcacattttcttta
gaattctctaagcttccagcataactgagacagacaggcatccacccttg
gagagtgagtgggtgcagagttctcagcatgtcctctgtaaagatatcca
gcattgcactgctgcgtccgaattgtataagccaatcctgtttgttatat
caaatgatctagaatgtatataatgatatataatgaagaggatataatcc
tcattcctttgtttctgcttctctaaagaagtctgattaatattccctat
aagcaaaggtaagtattcagaaatataaaactgtttatgacatgcctttg
atcatctgttacacctagggcatgttccagactcctacccatagtctatg
agaactgcagactgactctgacttctgtgaccataactttcagtcccctc
atgtgccacactatacagtcacactggctctcttccagttgaggtacaag
ttgaagtacaggatgctgtgggtgcctattatttttgcagttccttccac
ttgaaatgtttttcccaaaatccttttcatagtgggcttattcttcacac
ttaattctcagctcagatgccacctttttcaatggtatgccctaattgtc
ccttcctctaacaatctctgataccgtaacgtgttccttccccttagagg
tatatgcaatgcctggaatatgacagtcatttatttgtgcaaatatttat
acctgtcttctctcccaaatgaagtaaaacctcagcaagaatcatatctt
actgttgtctctaaagtactgcctgacacacactaggtgctcaataaata
cctgttgtactgactagtcattaaaaataaataaaacctgtctttcctga
atagaaattcatttttaaagcacactgctatgtaacataaagcctgtatg
acccaatatctggggcttatttgacaaatctgattatcttatttgggtaa
tatccatgaatgctgagaataggctaaatgccagcaaagcacacagcaaa
tgtgatccctcctagactgcaagatcaaaccttggcagatgctatgctaa
tataaagtggtcaatattcttgaagaagtcttgaaaggcaatatttttgc
tgaattctgcctgcccataatatacgtcagtatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145829632_145830182
seq2: B6Ng01-157A18.b_51_602 (reverse)

seq1  GGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAA  50
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  GGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAACCCAAA  50

seq1  GTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGC  100
      |||||||| ||||||| |||||| |||| |||||||||||||||| ||||
seq2  GTATTCCATGACAAAATCAAATTTACAC-ATATCTTTCCACGAATTCAGC  99

seq1  CCTTCAAAGGATAATA---GAAAAGAAGCAATACAAGGACGGAAATCACG  147
      ||||||||||||||||   | |||  | ||| ||||||| |||||| | |
seq2  CCTTCAAAGGATAATAAAGGGAAAACACCAACACAAGGAGGGAAATTATG  149

seq1  CCCTAGAACAAACAAGAAAGTAATCCCTCAACAAACCAAAAAGAAGACAG  197
      ||| |||| || |||||||||||||| ||||  |||||||||||||| ||
seq2  CCCAAGAAAAAGCAAGAAAGTAATCCTTCAAGGAACCAAAAAGAAGATAG  199

seq1  CCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACA  247
       | ||||| |||||| |||| | ||||||||||||||| || ||||| ||
seq2  TCTCAAGAGCAGAATTCCAATTTTAACAACAAAAATAACAGAAAGCAGCA  249

seq1  ATTACTTTTCCTTAATATCTCTTAATATTAATGGACTCAATTCCCCAATA  297
      ||||||||||  |||||| ||||||||||||||||| ||| || ||||||
seq2  ATTACTTTTCACTAATATGTCTTAATATTAATGGACACAACTCTCCAATA  299

seq1  AAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTG  347
      ||||||||||| ||||||||||||| ||| ||| ||||||||||||| ||
seq2  AAAAGACATAGGCTAACAGACTGGCAACATAAAAAGGACCCAACATTTTG  349

seq1  CTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGATACTACCTCAGAG  397
      |||  ||||||||||||| |||||||| ||||||||| ||||||||||||
seq2  CTGAATACAGGAAACCCACCTCAGGGACAAAGACAGACACTACCTCAGAG  399

seq1  TGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCT  447
      | ||||| |||||||  ||||||||||||||||||| ||||||| || ||
seq2  TAAAAGGGTGGAAAATGATTTTCCAAGCAAATGGTCCGAAGAAA-AAACT  448

seq1  GGAGTAGCCATTCTAATATCGGATAAAATCGACTTCCAACCCAAAGTTAT  497
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  GGAGTAGCCATTCTAATATCGAATTAAATCGACTTCCAACCCAAAGTTAT  498

seq1  CAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCC  547
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  CAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATATTCC  548

seq1  AAGA  551
      ||||
seq2  AAGA  552

seq1: chr14_11627174_11628334
seq2: B6Ng01-157A18.g_68_1202

seq1  GAATTCTCTAAGCTTCCAGCATAACTGAGACAGACAGGCATCCACCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGCTTCCAGCATAACTGAGACAGACAGGCATCCACCCTTG  50

seq1  GAGAGTGAGTGGGTGCAGAGTTCTCAGCATGTCCTCTGTAAAGATATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGTGGGTGCAGAGTTCTCAGCATGTCCTCTGTAAAGATATCCA  100

seq1  GCATTGCACTGCTGCGTCCGAATTGTATAAGCCAATCCTGTTTGTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCACTGCTGCGTCCGAATTGTATAAGCCAATCCTGTTTGTTATAT  150

seq1  CAAATGATCTAGAATGTATATAATGATATATAATGAAGAGGATATAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATCTAGAATGTATATAATGATATATAATGAAGAGGATATAATCC  200

seq1  TCATTCCTTTGTTTCTGCTTCTCTAAAGAAGTCTGATTAATATTCCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTGTTTCTGCTTCTCTAAAGAAGTCTGATTAATATTCCCTAT  250

seq1  AAGCAAAGGTAAGTATTCAGAAATATAAAACTGTTTATGACATGCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGTAAGTATTCAGAAATATAAAACTGTTTATGACATGCCTTTG  300

seq1  ATCATCTGTTACACCTAGGGCATGTTCCAGACTCCTACCCATAGTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTTACACCTAGGGCATGTTCCAGACTCCTACCCATAGTCTATG  350

seq1  AGAACTGCAGACTGACTCTGACTTCTGTGACCATAACTTTCAGTCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCAGACTGACTCTGACTTCTGTGACCATAACTTTCAGTCCCCTC  400

seq1  ATGTGCCACACTATACAGTCACACTGGCTCTCTTCCAGTTGAGGTACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACACTATACAGTCACACTGGCTCTCTTCCAGTTGAGGTACAAG  450

seq1  TTGAAGTACAGGATGCTGTGGGTGCCTATTATTTTTGCAGTTCCTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTACAGGATGCTGTGGGTGCCTATTATTTTTGCAGTTCCTTCCAC  500

seq1  TTGAAATGTTTTTCCCAAAATCCTTTTCATAGTGGGCTTATTCTTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTTTTTCCCAAAATCCTTTTCATAGTGGGCTTATTCTTCACAC  550

seq1  TTAATTCTCAGCTCAGATGCCACCTTTTTCAATGGTATGCCCTAATTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTCAGCTCAGATGCCACCTTTTTCAATGGTATGCCCTAATTGTC  600

seq1  CCTTCCTCTAACAATCTCTGATACCGTAACGTGTTCCTTCCCCTTAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTAACAATCTCTGATACCGTAACGTGTTCCTTCCCCTTAGAGG  650

seq1  TATATGCAATGCCTGGAATATGACAGTCATTTATTTGTGCAAATATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAATGCCTGGAATATGACAGTCATTTATTTGTGCAAATATTTAT  700

seq1  ACCTGTCTTCTCTCCCAAATGAAGTAAAACCTCAGCAAGAATCATATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTTCTCTCCCAAATGAAGTAAAACCTCAGCAAGAATCATATCTT  750

seq1  ACTGTTGTCTCTAAAGTACTGCCTGACACACACTAGGTGCTCAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCTCTAAAGTACTGCCTGACACACACTAGGTGCTCAATAAATA  800

seq1  CCTGTTGTACTGACTAGTCATTAAAAATAAATAAAACCTGTCTTTCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTACTGACTAGTCATTAAAAATAAATAAAACCTGTCTTTCCTGA  850

seq1  ATAGAAATTCATTTTTAAAGCACACTGCTATGTAACATAAAGCCTGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTCATTTTTAAAGCACACTGCTATGTAACATAAAGCCTGTATG  900

seq1  ACCCAATTATCTGGGGCTTATTTGACAAATCTGATTATCTTATTTTGGGG  950
      |||||| ||||||||||||||||||||||||||||||||||||||   ||
seq2  ACCCAA-TATCTGGGGCTTATTTGACAAATCTGATTATCTTATTT---GG  946

seq1  TTAATATCCATGAATTGCTGAGAATAGGCTAAATGCCAAGCAAAGCACAC  1000
       ||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  GTAATATCCATGAA-TGCTGAGAATAGGCTAAATGCC-AGCAAAGCACAC  994

seq1  AAGCAAATGTGATCCCTCCCTAGGACTGCAAGGATTCAAAAACCTTGGCA  1050
       |||||||||||||||| |||| |||||||| |||    |||||||||| 
seq2  -AGCAAATGTGATCCCT-CCTA-GACTGCAA-GAT---CAAACCTTGGC-  1036

seq1  AGATGCCTATGCTAATTATAAAGTGGTCCAATATTCATG-AGAAGTACTT  1099
      ||||| ||||||||| ||||||||||| |||||||| || |||||| |||
seq2  AGATG-CTATGCTAA-TATAAAGTGGT-CAATATTCTTGAAGAAGT-CTT  1082

seq1  GAAAAGCCATTATTTTTGCCTGAAATTTTCTTGGCTGCCCCATAATTAAT  1149
      | |||| || |||||||| |||||   ||| || ||| ||||||||  ||
seq2  G-AAAGGCAATATTTTTG-CTGAA---TTC-TGCCTG-CCCATAAT--AT  1123

seq1  ACGTCAGTATCA  1161
      ||||||||||||
seq2  ACGTCAGTATCA  1135