BAC Information

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BAC

Clone NameB6Ng01-157O11
Chromosome2 (Build37)
Map Location 72,502,226 - 72,651,913
singlet/doubletdoublet
Overlap geneLOC100039928, 6430710C18Rik
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157O11.bB6Ng01-157O11.g
ACCDH952008DH952009
length4671,108
definitionDH952008|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O11, 5' end.DH952009|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,651,443 - 72,651,913)(72,502,226 - 72,503,352)
sequence
agctacactactaatgagaaggactctggcaaagcaggaaagatgcacac
acgtgctgtgctcgtggtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgt
gtggtatttaattaagggatggaggtggggcttgacagggaaccttactg
gtaaatagcgcaagtcagtagccagcttgggaattacctggaacaaggaa
gagcctgaaatggatgtccacgaagaggcccgtcggctgtccgatgaggt
gtctgctatcaaagggaaatgtgtactttttgaggtgaggtcggttctgt
gccctgaacccagtgattttcgttttttgttctgataacaagttggtgcc
atttttctctgaactgagaaattttatattcttagaaaaggctgtccaaa
tatttgcagttctatgtttcttggtaatgtactctggatgaatctgataa
tttaaagcccacttcat
gaattcctccgaggacttgggtttgggtgacagaagccaggggcgagggt
ttgctttgtctcccgccccagcagagacttccctgacagtgctcactgtg
cttcttcttgcttacgtggagaaacacaccaagagagaggtggcgtggtc
acatctgaaaatgccagtcacccatccaaccaacggaatcattttgtggt
ccatagtcaaatagttctgcaaatggcttcctaatggcctactgagaagc
caggtggatgtcaagagggtggccttacagccaatagtctggtgacagaa
aggaggacagtgggagaccctttcttcttcagattcctgtctgtaagacc
ctcaagtgctcttaaccactgagacatccctccagctcaattttaatgta
attttaaaaagatttatttattgtgggtaatagagctactacatgtatat
tttcaacactggacacaactcccccccccccaaaaggcttgaaactaaac
attgaatcaatttgaaataaaattctatctctgcctgtctgggaaaatta
attgattgctctggacctctgtgtcttttcctctgaacccagtattgcca
ggtggtttgataggactcctgagagactcaggcgagatggtctgcatacg
tgacttgcacagtccatcacccgagggcttcagcaatcacaggttctcgc
cagtggcccctcactccacagaaaacatgtagtgattatttcccagcacc
agttctagcggggtctcacgagtaacagcctgctcaactggaatgaaaga
gggcacctggtggagccttgggattggttttctgtacacagcctttggtt
tgtagcttgcacatacaactgttgttctgtaacatcaacttaagatggtg
ttccagtttgtttctgcatggcttgtatctcagtccctaaagttagtcag
ctattttcataggaggagaaaagaatctaaattcatatgaaacacaaaag
acaccgaataccaatcagtcttgggtagtgaacaaagacagcatcacact
gcttggtgtgatctaacgcatgttgtgcataaaccatgctaagcaatggg
acagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72651443_72651913
seq2: B6Ng01-157O11.b_47_518 (reverse)

seq1  TGAAGTGGGCTTTAAATTATCAGATTCATCCAGAGTACATTACCAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGGCTTTAAATTATCAGATTCATCCAGAGTACATTACCAAGAAA  50

seq1  CATTGAATTG-TTATCTTTAGACAGCCTTTTCTAAGAATTTACAATTTCT  99
      ||| ||| ||   || ||| ||||||||||||||||||| || |||||||
seq2  CATAGAACTGCAAATATTTGGACAGCCTTTTCTAAGAATATAAAATTTCT  100

seq1  CAGTTCAGTGAAGCCTGGCACCAGCTTGTTATCAGAACAAAAAACGAAAA  149
      |||||||| |||   |||||||| ||||||||||||||||||||||||||
seq2  CAGTTCAGAGAAAAATGGCACCAACTTGTTATCAGAACAAAAAACGAAAA  150

seq1  TCACTCGGTTCAGGGCACAGAACCGACCTCACCTCAAAAAGTACACATTT  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGTTCAGGGCACAGAACCGACCTCACCTCAAAAAGTACACATTT  200

seq1  CCCTCTGATAGCAGACACCTCATCGGACAGCCGACGGGCCTCTTCGTGGA  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGATAGCAGACACCTCATCGGACAGCCGACGGGCCTCTTCGTGGA  250

seq1  CATCCATTTCAGGCTCTTCCTTGTTCCAGGTAATTCCCAAGCTGGCTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTCAGGCTCTTCCTTGTTCCAGGTAATTCCCAAGCTGGCTACT  300

seq1  GACTTGCGCTATTTACCAGTAAGGTTCCCTGTCAAGCCCCACCTCCATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCGCTATTTACCAGTAAGGTTCCCTGTCAAGCCCCACCTCCATCC  350

seq1  CTTAATTAAATACCACACACACACACACACACACACACACTCACACACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAAATACCACACACACACACACACACACACACACTCACACACAC  400

seq1  CACGAGCACAGCACGTGTGTGCATCTTTCCTGCTTTGCCAGAGTCCTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCACAGCACGTGTGTGCATCTTTCCTGCTTTGCCAGAGTCCTTCT  450

seq1  CATTAGTAGTGTAGCTGAATTC  471
      ||||||||||||||||||||||
seq2  CATTAGTAGTGTAGCTGAATTC  472

seq1: chr2_72502226_72503352
seq2: B6Ng01-157O11.g_68_1175

seq1  GAATTCCTCCGAGGACTTGGGTTTGGGTGACAGAAGCCAGGGGCGAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCGAGGACTTGGGTTTGGGTGACAGAAGCCAGGGGCGAGGGT  50

seq1  TTGCTTTGTCTCCCGCCCCAGCAGAGACTTCCCTGACAGTGCTCACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTCTCCCGCCCCAGCAGAGACTTCCCTGACAGTGCTCACTGTG  100

seq1  CTTCTTCTTGCTTACGTGGAGAAACACACCAAGAGAGAGGTGGCGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTGCTTACGTGGAGAAACACACCAAGAGAGAGGTGGCGTGGTC  150

seq1  ACATCTGAAAATGCCAGTCACCCATCCAACCAACGGAATCATTTTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAAATGCCAGTCACCCATCCAACCAACGGAATCATTTTGTGGT  200

seq1  CCATAGTCAAATAGTTCTGCAAATGGCTTCCTAATGGCCTACTGAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTCAAATAGTTCTGCAAATGGCTTCCTAATGGCCTACTGAGAAGC  250

seq1  CAGGTGGATGTCAAGAGGGTGGCCTTACAGCCAATAGTCTGGTGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATGTCAAGAGGGTGGCCTTACAGCCAATAGTCTGGTGACAGAA  300

seq1  AGGAGGACAGTGGGAGACCCTTTCTTCTTCAGATTCCTGTCTGTAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACAGTGGGAGACCCTTTCTTCTTCAGATTCCTGTCTGTAAGACC  350

seq1  CTCAAGTGCTCTTAACCACTGAGACATCCCTCCAGCTCAATTTTAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGCTCTTAACCACTGAGACATCCCTCCAGCTCAATTTTAATGTA  400

seq1  ATTTTAAAAAGATTTATTTATTGTGGGTAATAGAGCTACTACATGTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAAGATTTATTTATTGTGGGTAATAGAGCTACTACATGTATAT  450

seq1  TTTCAACACTGGACACAACTCCCCCCCCCCCAAAAGGCTTGAAACTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACACTGGACACAACTCCCCCCCCCCCAAAAGGCTTGAAACTAAAC  500

seq1  ATTGAATCAATTTGAAATAAAATTCTATCTCTGCCTGTCTGGGAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCAATTTGAAATAAAATTCTATCTCTGCCTGTCTGGGAAAATTA  550

seq1  ATTGATTGCTCTGGACCTCTGTGTCTTTTCCTCTGAACCCAGTATTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGCTCTGGACCTCTGTGTCTTTTCCTCTGAACCCAGTATTGCCA  600

seq1  GGTGGTTTGATAGGACTCCTGAGAGACTCAGGCGAGATGGTCTGCATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGATAGGACTCCTGAGAGACTCAGGCGAGATGGTCTGCATACG  650

seq1  TGACTTGCACAGTCCATCACCCGAGGGCTTCAGCAATCACAGGTTCTCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCACAGTCCATCACCCGAGGGCTTCAGCAATCACAGGTTCTCGC  700

seq1  CAGTGGCCCCTCACTCCACAGAAAACATGTAGTGATTATTTCCCAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCCCTCACTCCACAGAAAACATGTAGTGATTATTTCCCAGCACC  750

seq1  AGTTCTAGCGGGGTCTCACGAGTAACAGCCTGCTCAAACTGGAATGAAAG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTCTAGCGGGGTCTCACGAGTAACAGCCTGCTC-AACTGGAATGAAAG  799

seq1  AGGGCACCTGGTGGAGCCTTGGGATTGGTTTTCTGTACACAGCCTTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCTGGTGGAGCCTTGGGATTGGTTTTCTGTACACAGCCTTTGGT  849

seq1  TTGTAGCTTGCACATACAACTGTTGTTCTGTAACATCAACTTAAGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTTGCACATACAACTGTTGTTCTGTAACATCAACTTAAGATGGT  899

seq1  GTTCCAGTTTTGTTTCTGCATGGCCTTGTATCTCAGTCCCTAAAGTTAGT  950
      ||||||| ||||||||||||||| ||||||||||||||||||||||||| 
seq2  GTTCCAG-TTTGTTTCTGCATGG-CTTGTATCTCAGTCCCTAAAGTTAG-  946

seq1  TCAGCTATTTTCATAGGAAGGAGAAAAAGAAATCTTAAAATTCATATGAA  1000
      ||||||||||||||||| |||||||||   |||||  |||||||||||||
seq2  TCAGCTATTTTCATAGG-AGGAGAAAA--GAATCT--AAATTCATATGAA  991

seq1  ACCACAAAAGACACCGAATACCCAAATCAGTCTTGGGTAAGTGGAACAAA  1050
      | ||||||||||||||||||||  |||||||||||||| ||| |||||||
seq2  A-CACAAAAGACACCGAATACC--AATCAGTCTTGGGT-AGT-GAACAAA  1036

seq1  GACAGCAATCACACTGCCTGGTGTGATCTAAACAGCATGTGTTGGCATAA  1100
      |||||| |||||||||| |||||||||||||   |||||| |  ||||||
seq2  GACAGC-ATCACACTGCTTGGTGTGATCTAA--CGCATGT-TGTGCATAA  1082

seq1  AACATGCTAAGCAATGGGACAAGTCAA  1127
      | |||||||||||||||||| ||||||
seq2  ACCATGCTAAGCAATGGGAC-AGTCAA  1108