BAC Information

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BAC

Clone NameB6Ng01-158A13
Chromosome2 (Build37)
Map Location 173,358,869 - 173,387,170
singlet/doubletdoublet
Overlap genenone
Upstream geneTcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik
Downstream gene1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158A13.bB6Ng01-158A13.g
ACCDH952103DH952104
length1,1071,153
definitionDH952103|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A13, 5' end.DH952104|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,358,869 - 173,359,992)(173,386,010 - 173,387,170)
sequence
gaattcaattaccttggaccattgcaaatttgacatttaatctatggaaa
gccacctcgttgtgggtgtccaagcaggcctataaatgtcaccgcaccct
gtaaaataccatagcatttccaaggtccagacccggctagcaaacccatg
tgcgtgatattgacattattccaataatgaacctctaactgaagtcagtc
caaatgaacaggctccgaaatgctgccaaacagaactggatcagggactc
agagcagacccattctgagtacgtttccgcctaacatcaattagaaacgc
ctgtgtttgatttataagaaagtacaattgaacacaacctgaaagccagg
aggaccagcgcataactactgtaacaggccagctgcccccagggacgcag
catttcaggcacccaaagccccagaagagattgcttgagatattgcagtg
atcatgtttcagagactacacattacatactgtgtattatataaccccac
cccgagggcagggtctgctacaaagtgagttccaggacagccagggctac
acagaaaaacggtgtctcaaaaaaaccaaaccaaaccaaaccaaaccaaa
ccaaacaccaaaaaaaaaaaactttttaaaaatgcatgcatgtattttga
ctgtgtgtatgtatgtgtgaaacatgcacacaatgccctgggaggccaag
aaaatgcgaatcagatcccctgggactggagttccacatggttgtgagat
gccgtggtgacgtgagatgccgtggtgacatgagatggcgtggcgacgct
gggcgctgaagttcaatggatgagctgaagttctcttagctgatgagcca
tctctctggtccccgtcatttttactgaaacttaaacacactaaaggaaa
ggctctaaggagccaatgtcagtttggtggaactttgtccccaaatgatc
gttgtgtcaaaccaaatgagcactcctgggctttggtgcagtttagagtt
ggaaacgacgaaaagtttagaaataagcgttcctgtcacagcggacatgt
gggagcagtcttcatcctgctgcttcatgaaattattcaggtctgtgttg
taacaga
gaattcaatatgtagccgaggctggctttgaactcatagagatctacctg
cttcttcctcccaattgctgggttgaaaggtgtgcgccaccatgcctggc
ttgtaaatccacattttgacctccaaacagaggggtgcctaagacctttc
aactgtaacgggcattgtaatgcaacaagagaggggaaggcacctccagg
gccaagccttgctcctcagctgagtgcaaaccatgcgtgtacacggaagg
gctggctgtgatctaagacacgcacgcgcagaaccacatgcaaagatttc
agaacagcatccagctcggcaccatgaagttctggctggggttctgagat
ggcccgtagagtgtgttcccacctgcaggcagagtccttcttggaaaaga
accgaaaagaaggtccacctggaggccaagagcgtcagctgccagcaggt
tagacaagtgccctgtgtggcggtggggtcaaggaggtatctgattctct
gcttgccatccagcaacgagagaggcgtgttttacctcagtgttcctgcg
ctggggcccactggggctccgtcaccaccttccttacctcacagccatct
cttccagggacaaagccagccagatggcttctttagatcatcctggccct
cgccagacccctgctccacccttcatatagccttctctgtgtgtgctcat
gcttgagtgtgcacgtgcaggtgtgtgtggtggccatgctggacatgagt
tatctttttctcgcctttgggctgctgaggtggctcagcagataaaggag
cttgctgccaagcatgatgacctgagtttgatccctgggacgcacgcgac
gcatagggaaaattgacttcctcaacttgtcctctgaccagctccatctg
tgtgcacccgcacctgccccctatacgcataatgtaacacaacattgtta
gagaatctctaagcgaaggaagcctaagctgctgatcagctacactggct
ggcagcaagggctcctcctgtctctattcgctcagagcagggtttacagg
agtgtcccacatacacttacatgggcacatggatctgaaccctgacccag
aatgggagtcacatgattcacttccatctccggtagctggggagaatata
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173358869_173359992
seq2: B6Ng01-158A13.b_46_1152

seq1  GAATTCAATTACCTTGGACCATTGCAAATTTGACATTTAATCTATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTACCTTGGACCATTGCAAATTTGACATTTAATCTATGGAAA  50

seq1  GCCACCTCGTTGTGGGTGTCCAAGCAGGCCTATAAATGTCACCGCACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCGTTGTGGGTGTCCAAGCAGGCCTATAAATGTCACCGCACCCT  100

seq1  GTAAAATACCATAGCATTTCCAAGGTCCAGACCCGGCTAGCAAACCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATACCATAGCATTTCCAAGGTCCAGACCCGGCTAGCAAACCCATG  150

seq1  TGCGTGATATTGACATTATTCCAATAATGAACCTCTAACTGAAGTCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGATATTGACATTATTCCAATAATGAACCTCTAACTGAAGTCAGTC  200

seq1  CAAATGAACAGGCTCCGAAATGCTGCCAAACAGAACTGGATCAGGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACAGGCTCCGAAATGCTGCCAAACAGAACTGGATCAGGGACTC  250

seq1  AGAGCAGACCCATTCTGAGTACGTTTCCGCCTAACATCAATTAGAAACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGACCCATTCTGAGTACGTTTCCGCCTAACATCAATTAGAAACGC  300

seq1  CTGTGTTTGATTTATAAGAAAGTACAATTGAACACAACCTGAAAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGATTTATAAGAAAGTACAATTGAACACAACCTGAAAGCCAGG  350

seq1  AGGACCAGCGCATAACTACTGTAACAGGCCAGCTGCCCCCAGGGACGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGCGCATAACTACTGTAACAGGCCAGCTGCCCCCAGGGACGCAG  400

seq1  CATTTCAGGCACCCAAAGCCCCAGAAGAGATTGCTTGAGATATTGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGGCACCCAAAGCCCCAGAAGAGATTGCTTGAGATATTGCAGTG  450

seq1  ATCATGTTTCAGAGACTACACATTACATACTGTGTATTATATAACCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTCAGAGACTACACATTACATACTGTGTATTATATAACCCCAC  500

seq1  CCCGAGGGCAGGGTCTGCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGCAGGGTCTGCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  550

seq1  ACAGAAAAACGGTGTCTCAAAAAAACCAAACCAAACCAAACCAAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAACGGTGTCTCAAAAAAACCAAACCAAACCAAACCAAACCAAA  600

seq1  CCAAACACCAAAAAAAAAAAACTTTTTAAAAATGCATGCATGTATTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCAAAAAAAAAAAACTTTTTAAAAATGCATGCATGTATTTTGA  650

seq1  CTGTGTGTATGTATGTGTGAAACATGCACACAATGCCCTGGGAGGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTATGTATGTGTGAAACATGCACACAATGCCCTGGGAGGCCAAG  700

seq1  AAAATGCGAATCAGATCCCCTGGGACTGGAGTTCCACATGGTTGTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCGAATCAGATCCCCTGGGACTGGAGTTCCACATGGTTGTGAGAT  750

seq1  GCCGTGGTGACGTGAGATGCCGTGGTGACATGAGATGGCGTGGCGACGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGTGACGTGAGATGCCGTGGTGACATGAGATGGCGTGGCGACGCT  800

seq1  GGGCGCTGAAGTTCAATGGATGAGCTGAAGTTCTCTTAGCTGATGAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTGAAGTTCAATGGATGAGCTGAAGTTCTCTTAGCTGATGAGCCA  850

seq1  TCTCTCTGGTCCCCGTCATTTTTACTGAAACTTAAACACACTAAAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGTCCCCGTCATTTTTACTGAAACTTAAACACACTAAAGGAAA  900

seq1  GGCTCTAAGGAGCCAATGTCAGTTTGGTGGAACTTTGTCCCCCAAATGAT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCTCTAAGGAGCCAATGTCAGTTTGGTGGAACTTTGT-CCCCAAATGAT  949

seq1  CGTTTGTGTCAAACCAAATGAGCACTCCTGGGCTTTGGTGCAGTTTAGAG  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CG-TTGTGTCAAACCAAATGAGCACTCCTGGGCTTTGGTGCAGTTTAGAG  998

seq1  TTTGGAAACGACGAAAAAGTTTAGAAATAAAGCGTTCCTGTCACAGCGGA  1050
       |||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  -TTGGAAACGACG-AAAAGTTTAGAAAT-AAGCGTTCCTGTCACAGCGGA  1045

seq1  CATTGTGGGAGCAAGTCCTTCAACCCTGCCTGCCTTCATGAAATTATTCA  1100
      || ||||||||| ||| |||| | |||| ||| |||||||||||||||||
seq2  CA-TGTGGGAGC-AGT-CTTC-ATCCTG-CTG-CTTCATGAAATTATTCA  1089

seq1  GGGGTTCTGTTGGTTGTAAACAGA  1124
      ||   |||||  ||||| ||||||
seq2  GG---TCTGT--GTTGT-AACAGA  1107

seq1: chr2_173386010_173387170
seq2: B6Ng01-158A13.g_68_1220 (reverse)

seq1  ACATATATCCTCCCCAAGCCTACGGAGGATGGGAGTGAATCATGGTGACT  50
      |||||||| |||||||   |||| |  ||||| |||||||||| ||||||
seq2  ACATATATTCTCCCCA--GCTACCGGAGATGGAAGTGAATCAT-GTGACT  47

seq1  TCCCATCTGGGTCAGGGTTCAGATCCATGTGCCCATGTAAGTGGTATGTG  100
       ||  ||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCATTCTGGGTCAGGGTTCAGATCCATGTGCCCATGTAAGT-GTATGTG  96

seq1  GGACACTCCTGTAAACCCTGCTCTGGAGCG-ATAGAGACAGGAGGAGCCC  149
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGACACTCCTGTAAACCCTGCTCT-GAGCGAATAGAGACAGGAGGAGCCC  145

seq1  TTGCTGGCCAGCCAGTGTAGCTGAATCAGCAAGCTTAGGCTTCCTTCGCT  199
      ||||| ||||||||||||||||| |||||| |||||||||||||||||||
seq2  TTGCT-GCCAGCCAGTGTAGCTG-ATCAGC-AGCTTAGGCTTCCTTCGCT  192

seq1  TAGAGATTCTCTTAACAATGTTGTGTTACATTATGCGTATAGGGGGCAGG  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTCTC-TAACAATGTTGTGTTACATTATGCGTATAGGGGGCAGG  241

seq1  TGCGGGTGCACACAGATGGAGCTGGTCAGAGGACAAGTTGAGGAAGTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTGCACACAGATGGAGCTGGTCAGAGGACAAGTTGAGGAAGTCAA  291

seq1  TTTTCCCTATGCGTCGCGTGCGTCCCAGGGATCAAACTCAGGTCATCATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTATGCGTCGCGTGCGTCCCAGGGATCAAACTCAGGTCATCATG  341

seq1  CTTGGCAGCAAGCTCCTTTATCTGCTGAGCCACCTCAGCAGCCCAAAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGCAAGCTCCTTTATCTGCTGAGCCACCTCAGCAGCCCAAAGGC  391

seq1  GAGAAAAAGATAACTCATGTCCAGCATGGCCACCACACACACCTGCACGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGATAACTCATGTCCAGCATGGCCACCACACACACCTGCACGT  441

seq1  GCACACTCAAGCATGAGCACACACAGAGAAGGCTATATGAAGGGTGGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCAAGCATGAGCACACACAGAGAAGGCTATATGAAGGGTGGAGC  491

seq1  AGGGGTCTGGCGAGGGCCAGGATGATCTAAAGAAGCCATCTGGCTGGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTGGCGAGGGCCAGGATGATCTAAAGAAGCCATCTGGCTGGCTT  541

seq1  TGTCCCTGGAAGAGATGGCTGTGAGGTAAGGAAGGTGGTGACGGAGCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGGAAGAGATGGCTGTGAGGTAAGGAAGGTGGTGACGGAGCCCC  591

seq1  AGTGGGCCCCAGCGCAGGAACACTGAGGTAAAACACGCCTCTCTCGTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCCCCAGCGCAGGAACACTGAGGTAAAACACGCCTCTCTCGTTGC  641

seq1  TGGATGGCAAGCAGAGAATCAGATACCTCCTTGACCCCACCGCCACACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCAAGCAGAGAATCAGATACCTCCTTGACCCCACCGCCACACAG  691

seq1  GGCACTTGTCTAACCTGCTGGCAGCTGACGCTCTTGGCCTCCAGGTGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGTCTAACCTGCTGGCAGCTGACGCTCTTGGCCTCCAGGTGGAC  741

seq1  CTTCTTTTCGGTTCTTTTCCAAGAAGGACTCTGCCTGCAGGTGGGAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCGGTTCTTTTCCAAGAAGGACTCTGCCTGCAGGTGGGAACAC  791

seq1  ACTCTACGGGCCATCTCAGAACCCCAGCCAGAACTTCATGGTGCCGAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACGGGCCATCTCAGAACCCCAGCCAGAACTTCATGGTGCCGAGCT  841

seq1  GGATGCTGTTCTGAAATCTTTGCATGTGGTTCTGCGCGTGCGTGTCTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTTCTGAAATCTTTGCATGTGGTTCTGCGCGTGCGTGTCTTAG  891

seq1  ATCACAGCCAGCCCTTCCGTGTACACGCATGGTTTGCACTCAGCTGAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCCAGCCCTTCCGTGTACACGCATGGTTTGCACTCAGCTGAGGA  941

seq1  GCAAGGCTTGGCCCTGGAGGTGCCTTCCCCTCTCTTGTTGCATTACAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTTGGCCCTGGAGGTGCCTTCCCCTCTCTTGTTGCATTACAATG  991

seq1  CCCGTTACAGTTGAAAGGTCTTAGGCACCCCTCTGTTTGGAGGTCAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTACAGTTGAAAGGTCTTAGGCACCCCTCTGTTTGGAGGTCAAAAT  1041

seq1  GTGGATTTACAAGCCAGGCATGGTGGCGCACACCTTTCAACCCAGCAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTACAAGCCAGGCATGGTGGCGCACACCTTTCAACCCAGCAATT  1091

seq1  GGGAGGAAGAAGCAGGTAGATCTCTATGAGTTCAAAGCCAGCCTCGGCTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGAAGCAGGTAGATCTCTATGAGTTCAAAGCCAGCCTCGGCTA  1141

seq1  CATATTGAATTC  1161
      ||||||||||||
seq2  CATATTGAATTC  1153