BAC Information

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BAC

Clone NameB6Ng01-158F07
Chromosome2 (Build37)
Map Location 38,585,727 - 38,723,368
singlet/doubletdoublet
Overlap geneNr6a1
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1
Downstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158F07.bB6Ng01-158F07.g
ACCDH952307DH952308
length763779
definitionDH952307|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F07, 5' end.DH952308|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,722,608 - 38,723,368)(38,585,727 - 38,586,505)
sequence
gaattcttttaaattctaggtaataacaattaatcagatacctaatttgc
aacctcccccattttgcatactgatttctttactttgttgaatatattca
tagacacacagggctttttttttattttgaattttttgtgtttacatcat
tctcaggatattatacattccaagtatgtcttcaatagctgaattgtata
ctgccctggaattttaattttgatgttgttcaatatgctttattcttatt
tttgtctgtactttgagttttatagccataaaaccattgctcagtccaaa
gtcattattacagtttcaatatgaagtaccccacatactcacatatatat
ctttggtcacctgatgtagcagaaacatatggccagcagtcacttgtttt
atgatatataggaaacggagaaagtgaaggatgggagacctggtttaact
tttagagattccctccctgaattgataattccccaggtaggcatcacctc
tgaaactttctaccacctctcaaatagtgatagcacattagcctctgggg
gcgtttcatattcaaatcataataatctaccctccattctaagagcccat
cttgtaaagcacagtgcccataatctatttcctagagttctcaaaaatct
taacaattccaacatgtttcaaaaagttgaaactccttctttgagaaact
cctagatgaatttacctgcatcatcaaagtaagttgcacacttcccacga
tcccatgtcacat
gaattctccagggacttgggggctggcctggttttttttctcctttcccc
aaaccctgccaatatccttaatacatagtatagggcttgactagagaagg
catgtaggtcacctgataaatgcatgatggtatacagactggagtagtat
gtttatactgcactggaaagttgagtagggaatagtggtagaaaggaagg
gctgatcaagtctccggattagaaaactgagcacttttgaggctacagca
acagaatcactcaggtccactctgggattggggcattcatatgctacttt
ttctttcacaggccagtttccagcaagtaccacatgctacttgctggcac
tatgcctataaatcaactggattactctgatgaagagcgagcttcacgtg
cacatggagggttgcgtaccaccactcatccctgacatcagagccatggc
cagcctgtcaaccagccttatctccaacagtttcataagtcaccctctct
tcagttgctggtaaacttgtacatattttaaatgacgcacgttctgtcct
tgatgtctgtgtttaaatgcatgaaaactgactaaacaaagtgaatcctc
ttccttcctctgtgagttatagagattgtggcatttagacttcaagaaaa
aaaatctaagcattccttgcaccgtagagtaccagggtgatgactagggg
gagtacaggtcttccaagacttatggtcacatggtgtgacagattctgtg
acagtcctgggggcgggaggtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38722608_38723368
seq2: B6Ng01-158F07.b_46_808 (reverse)

seq1  ATGTGACATTGTGATCTTGGG-AGTGTGCAACTTACTTTTGATAATCCAG  49
      |||||||| || |||| |||| |||||||||||||| |||||| || |||
seq2  ATGTGACA-TGGGATCGTGGGAAGTGTGCAACTTAC-TTTGATGATGCAG  48

seq1  GT-AATTCATCTAAGAGTTTCTCAAAGAAGGAATTTCAAC-TTTTGAAAC  97
      || |||||||||| |||||||||||||||||| ||||||| |||||||||
seq2  GTAAATTCATCTAGGAGTTTCTCAAAGAAGGAGTTTCAACTTTTTGAAAC  98

seq1  ATGTTTGAATTGCTAAGATTTTTGAGAACTCTAGGAAATAGATTATGTGC  147
      ||||| |||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATGTTGGAATTGTTAAGATTTTTGAGAACTCTAGGAAATAGATTATGGGC  148

seq1  ACTGTGCTTTACAAGAT-GGCTCTTAGAATGGAGGGTAGATTATTATGAT  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTACAAGATGGGCTCTTAGAATGGAGGGTAGATTATTATGAT  198

seq1  TTGAATATGAAACGCCCCCAGAGGCTAATGTGCTATCACTATTTGAGAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATGAAACGCCCCCAGAGGCTAATGTGCTATCACTATTTGAGAGG  248

seq1  TGGTAGAAAGTTTCAGAGGTGATGCCTACCTGGGGAATTATCAATTCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAGTTTCAGAGGTGATGCCTACCTGGGGAATTATCAATTCAGG  298

seq1  GAGGGAATCTCTAAAAGTTAAACCAGGTCTCCCATCCTTCACTTTCTCCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATCTCTAAAAGTTAAACCAGGTCTCCCATCCTTCACTTTCTCCG  348

seq1  TTTCCTATATATCATAAAACAAGTGACTGCTGGCCATATGTTTCTGCTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATATATCATAAAACAAGTGACTGCTGGCCATATGTTTCTGCTAC  398

seq1  ATCAGGTGACCAAAGATATATATGTGAGTATGTGGGGTACTTCATATTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGACCAAAGATATATATGTGAGTATGTGGGGTACTTCATATTGA  448

seq1  AACTGTAATAATGACTTTGGACTGAGCAATGGTTTTATGGCTATAAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATAATGACTTTGGACTGAGCAATGGTTTTATGGCTATAAAACT  498

seq1  CAAAGTACAGACAAAAATAAGAATAAAGCATATTGAACAACATCAAAATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACAGACAAAAATAAGAATAAAGCATATTGAACAACATCAAAATT  548

seq1  AAAATTCCAGGGCAGTATACAATTCAGCTATTGAAGACATACTTGGAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAGGGCAGTATACAATTCAGCTATTGAAGACATACTTGGAATG  598

seq1  TATAATATCCTGAGAATGATGTAAACACAAAAAATTCAAAATAAAAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCCTGAGAATGATGTAAACACAAAAAATTCAAAATAAAAAAAA  648

seq1  AGCCCTGTGTGTCTATGAATATATTCAACAAAGTAAAGAAATCAGTATGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGTGTCTATGAATATATTCAACAAAGTAAAGAAATCAGTATGC  698

seq1  AAAATGGGGGAGGTTGCAAATTAGGTATCTGATAAATTGTTATTACCTAG  746
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAATGGGGGAGGTTGCAAATTAGGTATCTGATTAATTGTTATTACCTAG  748

seq1  AATTTAAAAGAATTC  761
      |||||||||||||||
seq2  AATTTAAAAGAATTC  763

seq1: chr2_38585727_38586505
seq2: B6Ng01-158F07.g_67_845

seq1  GAATTCTCCAGGGACTTGGGGGCTGGCCTGGTTTTTTTTCTCCTTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGACTTGGGGGCTGGCCTGGTTTTTTTTCTCCTTTCCCC  50

seq1  AAACCCTGCCAATATCCTTAATACATAGTATAGGGCTTGACTAGAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGCCAATATCCTTAATACATAGTATAGGGCTTGACTAGAGAAGG  100

seq1  CATGTAGGTCACCTGATAAATGCATGATGGTATACAGACTGGAGTAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGTCACCTGATAAATGCATGATGGTATACAGACTGGAGTAGTAT  150

seq1  GTTTATACTGCACTGGAAAGTTGAGTAGGGAATAGTGGTAGAAAGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACTGCACTGGAAAGTTGAGTAGGGAATAGTGGTAGAAAGGAAGG  200

seq1  GCTGATCAAGTCTCCGGATTAGAAAACTGAGCACTTTTGAGGCTACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCAAGTCTCCGGATTAGAAAACTGAGCACTTTTGAGGCTACAGCA  250

seq1  ACAGAATCACTCAGGTCCACTCTGGGATTGGGGCATTCATATGCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCACTCAGGTCCACTCTGGGATTGGGGCATTCATATGCTACTTT  300

seq1  TTCTTTCACAGGCCAGTTTCCAGCAAGTACCACATGCTACTTGCTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACAGGCCAGTTTCCAGCAAGTACCACATGCTACTTGCTGGCAC  350

seq1  TATGCCTATAAATCAACTGGATTACTCTGATGAAGAGCGAGCTTCACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTATAAATCAACTGGATTACTCTGATGAAGAGCGAGCTTCACGTG  400

seq1  CACATGGAGGGTTGCGTACCACCACTCATCCCTGACATCAGAGCCATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGGGTTGCGTACCACCACTCATCCCTGACATCAGAGCCATGGC  450

seq1  CAGCCTGTCAACCAGCCTTATCTCCAACAGTTTCATAAGTCACCCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTCAACCAGCCTTATCTCCAACAGTTTCATAAGTCACCCTCTCT  500

seq1  TCAGTTGCTGGTAAACTTGTACATATTTTAAATGACGCACGTTCTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCTGGTAAACTTGTACATATTTTAAATGACGCACGTTCTGTCCT  550

seq1  TGATGTCTGTGTTTAAATGCATGAAAACTGACTAAACAAAGTGAATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTGTGTTTAAATGCATGAAAACTGACTAAACAAAGTGAATCCTC  600

seq1  TTCCTTCCTCTGTGAGTTATAGAGATTGTGGCATTTAGACTTCAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCTGTGAGTTATAGAGATTGTGGCATTTAGACTTCAAGAAAA  650

seq1  AAAATCTAAGCATTCCTTGCACCGTAGAGTACCAGGGTGATGACTAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAGCATTCCTTGCACCGTAGAGTACCAGGGTGATGACTAGGGG  700

seq1  GAGTACAGGTCTTCCAAGACTTATGGTCACATGGTGTGACAGATTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGGTCTTCCAAGACTTATGGTCACATGGTGTGACAGATTCTGTG  750

seq1  ACAGTCCTGGGGGCGGGAGGTGGGGGTGG  779
      |||||||||||||||||||||||||||||
seq2  ACAGTCCTGGGGGCGGGAGGTGGGGGTGG  779