BAC Information

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BAC

Clone NameB6Ng01-158P06
Chromosome2 (Build37)
Map Location 28,753,722 - 28,899,678
singlet/doubletdoublet
Overlap geneDdx31, Barhl1, LOC100033452, 1700101E01Rik
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4
Downstream geneLOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P06.bB6Ng01-158P06.g
ACCDH952761DH952762
length9601,098
definitionDH952761|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P06, 5' end.DH952762|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,753,722 - 28,754,687)(28,898,554 - 28,899,678)
sequence
gaattcctataagtagcagtccaaaaaataagattaactttttgaccctc
aagaagagggtgccgcacgatgcggaggagtacatctttaattctagcag
agtctggtggatttctatgagttcaagttcagcctggtctaaatagtgag
ttccaggagagccaaagctctgcagagaagtcctgtttcaaaaagccaaa
agggtggggcccctgagagccagccttccaggtcaccagtgtgctgcatt
cagcatgtgagatgtgaacctcttgacagcagcaggggcacctctcctga
ggactcgtgctctatgtctacgccaggctgactctcttgtgctccttatc
ctgggaagacccatcctctgccgcagtgatgattgcttctagagtcatcc
ttgagctaagtaaccagtgtgtgacgctgggctttactccccaccccttc
ttctccctttaccccctctttgtgtgtctgtggcataggttctttcctcc
cactgagcgtgggttcagggcagcaggcttgcaaagcaagcacctttagc
catctttctagtccaagaggattctttttttttttttttttttttaatgt
gagatcattctttgtgtaaccaaagaaatggacttagagcaagagacagg
gttgtgtatagaatgggtgagctttatggctccgcttgttatggcaacag
gcctgtaaagaaacactcgtgagtaaagtctggctctgaagtggtgtcag
tttctgtgcgtgcagaagtaggaaggtaccataggtaccagagttcctgg
ttctggagctgggcccttcctggatactcataacccctagcacttggtga
ccacctgtttgtaaagtggaatggcagcagatcagcagccagtgtagaga
agccatgaatgcctgatgcctgtcagcagtgcattgcgagcccagaaagg
ctctcttctc
gaattcctcttcccctggcagcctccctgagcccacactaactttgcctg
ctcagcatttgccaaaagttataatgttataccaaatgtctgtccttagc
cgtctgtccatcagcggcacctccttggacaagatagccattgtctccac
accagacaactcatgaggccctggagaacaaacagtaagcccagagttct
tcaggacaagggtgatgagggacctgctaccaggggctagacccacttct
aggcttttaaaagactgacctttgagaagagtgggtatctgcgttgtgtt
tgggggcttaggagaggagatcctgcgaggccaagtaagaaagaggtttt
gtgaaagcagagtcagggataatctggagtcctggaacaggaggaggaca
gggtggccactactagcttctggggacagaaagaattaaggcatggctgt
gcaggaagctcagacctggaaagactcgtagagcccaaagctaaggaata
aaggatgcagaacccaaaggccccagagccaggtccagaaagcaacaact
gtcccagctgtgcctggcacctgcactgaaggaactggccaactggtgac
aggcaggtcactgtgcgactgctgagatgggtgtgtcgattgcattctgt
tatctctttaggtttgcctaaagagagctggggagctgaatggtgacagg
acactgccatgttgatggcttacagtcacagtcttccacttgtttccctt
tcgcaagttccaagtctgagacattctgaatgtccccagcaatctaagag
aaccttctggagaaatcctgagggtccctttgggctgagcgctcgggttg
cttccaaagctttataaactgtcactgaagatttttggctgttctggagg
taccagtgggcatgaattcagaggcttagtaatcttttagacttcttcta
ctaaggaaagccggcatctactcatgttctggcttctcagcagcccttgg
ggcaggtgctctggtttggcttttctagattgggagctctagaaggctga
gcccgagcttgagctctgctaggacactggatcgtaacggcagtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28753722_28754687
seq2: B6Ng01-158P06.b_48_1007

seq1  GAATTCCTATAAGTAGCAGTCCAAAAAATAAGATTAACTTTTTGACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAAGTAGCAGTCCAAAAAATAAGATTAACTTTTTGACCCTC  50

seq1  AAGAAGAGGGTGCCGCACGATGCGGAGGAGTACATCTTTAATTCTAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGGTGCCGCACGATGCGGAGGAGTACATCTTTAATTCTAGCAG  100

seq1  AGTCTGGTGGATTTCTATGAGTTCAAGTTCAGCCTGGTCTAAATAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTGGATTTCTATGAGTTCAAGTTCAGCCTGGTCTAAATAGTGAG  150

seq1  TTCCAGGAGAGCCAAAGCTCTGCAGAGAAGTCCTGTTTCAAAAAGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGAGCCAAAGCTCTGCAGAGAAGTCCTGTTTCAAAAAGCCAAA  200

seq1  AGGGTGGGGCCCCTGAGAGCCAGCCTTCCAGGTCACCAGTGTGCTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGCCCCTGAGAGCCAGCCTTCCAGGTCACCAGTGTGCTGCATT  250

seq1  CAGCATGTGAGATGTGAACCTCTTGACAGCAGCAGGGGCACCTCTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTGAGATGTGAACCTCTTGACAGCAGCAGGGGCACCTCTCCTGA  300

seq1  GGACTCGTGCTCTATGTCTACGCCAGGCTGACTCTCTTGTGCTCCTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCGTGCTCTATGTCTACGCCAGGCTGACTCTCTTGTGCTCCTTATC  350

seq1  CTGGGAAGACCCATCCTCTGCCGCAGTGATGATTGCTTCTAGAGTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACCCATCCTCTGCCGCAGTGATGATTGCTTCTAGAGTCATCC  400

seq1  TTGAGCTAAGTAACCAGTGTGTGACGCTGGGCTTTACTCCCCACCCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAAGTAACCAGTGTGTGACGCTGGGCTTTACTCCCCACCCCTTC  450

seq1  TTCTCCCTTTACCCCCTCTTTGTGTGTCTGTGGCATAGGTTCTTTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTTTACCCCCTCTTTGTGTGTCTGTGGCATAGGTTCTTTCCTCC  500

seq1  CACTGAGCGTGGGTTCAGGGCAGCAGGCTTGCAAAGCAAGCACCTTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCGTGGGTTCAGGGCAGCAGGCTTGCAAAGCAAGCACCTTTAGC  550

seq1  CATCTTTCTAGTCCAAGAGGATTCTTTTTTTTTTTTTTTTTTTTTAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTAGTCCAAGAGGATTCTTTTTTTTTTTTTTTTTTTTTAATGT  600

seq1  GAGATCATTCTTTGTGTAACCAAAGAAATGGACTTAGAGCAAGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATTCTTTGTGTAACCAAAGAAATGGACTTAGAGCAAGAGACAGG  650

seq1  GTTGTGTATAGAATGGGTGAGCTTTATGGCTCCGCTTGTTATGGCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTATAGAATGGGTGAGCTTTATGGCTCCGCTTGTTATGGCAACAG  700

seq1  GCCTGTAAAGAAACACTCGTGAGTAAAGTCTGGCTCTGAAGTGGTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAAGAAACACTCGTGAGTAAAGTCTGGCTCTGAAGTGGTGTCAG  750

seq1  TTTCTGTGCGTGCAGAAGTAGGAAGGTACCATAGGTACCAGAGGTTCCTG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCTGTGCGTGCAGAAGTAGGAAGGTACCATAGGTACCAGA-GTTCCTG  799

seq1  GTTCTGGAGCT-GGCCCTTCCTGGATACTCATAACCCCTAGCACTTGGTG  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAGCTGGGCCCTTCCTGGATACTCATAACCCCTAGCACTTGGTG  849

seq1  ACCACCTGTTTGTAAAGTGGGAATGGCAGCAGATCAGCAGCCAGTGTAGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  ACCACCTGTTTGTAAAGT-GGAATGGCAGCAGATCAGCAGCCAGTGTAG-  897

seq1  AGGAAGCCATGAATGCCTGATGCCTGGCCAGCAGTGCAGTGCGAGGCCCA  949
        ||||||||||||||||||||||| | |||||||||| ||||| |||||
seq2  -AGAAGCCATGAATGCCTGATGCCT-GTCAGCAGTGCATTGCGA-GCCCA  944

seq1  GGAAAGGCTCTCTTCTC  966
       ||||||||||||||||
seq2  -GAAAGGCTCTCTTCTC  960

seq1: chr2_28898554_28899678
seq2: B6Ng01-158P06.g_68_1165 (reverse)

seq1  CAGTACTGCTGTTACCAGATCCAGTGGTCTCTAGCCAAGAGCTCAAGGCT  50
      ||||||||| |||||  |||||||| ||| |||||  ||||||||| |||
seq2  CAGTACTGCCGTTAC--GATCCAGT-GTC-CTAGC--AGAGCTCAA-GCT  43

seq1  CTGGGCTCAGCCTCTTCTGAGAAACTCCCACTCTAGAAAAAGCCAAACCA  100
      | |||||||||  ||||| || | |||||| ||||| |||||||||||||
seq2  C-GGGCTCAGC--CTTCT-AG-AGCTCCCAATCTAG-AAAAGCCAAACCA  87

seq1  GGAGCACCCTGCCCCAAGGGCTGCTGAAGGAAGCCCAGGAACATGGGGTA  150
       ||||| ||||||||||||||||||||  ||||||   |||||| | |||
seq2  -GAGCA-CCTGCCCCAAGGGCTGCTGA--GAAGCC--AGAACAT-GAGTA  130

seq1  GATGCCGGCTTTCCTTTAGGTAGAAGAGTTCTTAAAAGATTTACTTAAGC  200
      ||||||||||||||||   ||||||||  || ||||||| |||| |||||
seq2  GATGCCGGCTTTCCTT--AGTAGAAGAAGTC-TAAAAGA-TTAC-TAAGC  175

seq1  CTCTGAATTCATGCCCACTGGGTACCTCCAGAACAGGCAAAAAATCTTCA  250
      ||||||||||||||||||| ||||||||||||||| || |||||||||||
seq2  CTCTGAATTCATGCCCACT-GGTACCTCCAGAACA-GCCAAAAATCTTCA  223

seq1  GTGACAGTTTATAAAGCTTTGGAAGCAACCCGAGCGCTCAGCCCAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTTATAAAGCTTTGGAAGCAACCCGAGCGCTCAGCCCAAAGGG  273

seq1  ACCCTCAGGATTTCTCCAGAAGGTTCTCTTAGATTGCTGGGGACATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGATTTCTCCAGAAGGTTCTCTTAGATTGCTGGGGACATTCAG  323

seq1  AATGTCTCAGACTTGGAACTTGCGAAAGGGAAACAAGTGGAAGACTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCAGACTTGGAACTTGCGAAAGGGAAACAAGTGGAAGACTGTGA  373

seq1  CTGTAAGCCATCAACATGGCAGTGTCCTGTCACCATTCAGCTCCCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCCATCAACATGGCAGTGTCCTGTCACCATTCAGCTCCCCAGCT  423

seq1  CTCTTTAGGCAAACCTAAAGAGATAACAGAATGCAATCGACACACCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGGCAAACCTAAAGAGATAACAGAATGCAATCGACACACCCATC  473

seq1  TCAGCAGTCGCACAGTGACCTGCCTGTCACCAGTTGGCCAGTTCCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTCGCACAGTGACCTGCCTGTCACCAGTTGGCCAGTTCCTTCAG  523

seq1  TGCAGGTGCCAGGCACAGCTGGGACAGTTGTTGCTTTCTGGACCTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGCCAGGCACAGCTGGGACAGTTGTTGCTTTCTGGACCTGGCTC  573

seq1  TGGGGCCTTTGGGTTCTGCATCCTTTATTCCTTAGCTTTGGGCTCTACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTTTGGGTTCTGCATCCTTTATTCCTTAGCTTTGGGCTCTACGA  623

seq1  GTCTTTCCAGGTCTGAGCTTCCTGCACAGCCATGCCTTAATTCTTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCAGGTCTGAGCTTCCTGCACAGCCATGCCTTAATTCTTTCTGT  673

seq1  CCCCAGAAGCTAGTAGTGGCCACCCTGTCCTCCTCCTGTTCCAGGACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAGCTAGTAGTGGCCACCCTGTCCTCCTCCTGTTCCAGGACTCC  723

seq1  AGATTATCCCTGACTCTGCTTTCACAAAACCTCTTTCTTACTTGGCCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCCCTGACTCTGCTTTCACAAAACCTCTTTCTTACTTGGCCTCG  773

seq1  CAGGATCTCCTCTCCTAAGCCCCCAAACACAACGCAGATACCCACTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTCCTCTCCTAAGCCCCCAAACACAACGCAGATACCCACTCTTC  823

seq1  TCAAAGGTCAGTCTTTTAAAAGCCTAGAAGTGGGTCTAGCCCCTGGTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCAGTCTTTTAAAAGCCTAGAAGTGGGTCTAGCCCCTGGTAGC  873

seq1  AGGTCCCTCATCACCCTTGTCCTGAAGAACTCTGGGCTTACTGTTTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTCATCACCCTTGTCCTGAAGAACTCTGGGCTTACTGTTTGTTC  923

seq1  TCCAGGGCCTCATGAGTTGTCTGGTGTGGAGACAATGGCTATCTTGTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCCTCATGAGTTGTCTGGTGTGGAGACAATGGCTATCTTGTCCA  973

seq1  AGGAGGTGCCGCTGATGGACAGACGGCTAAGGACAGACATTTGGTATAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGCCGCTGATGGACAGACGGCTAAGGACAGACATTTGGTATAAC  1023

seq1  ATTATAACTTTTGGCAAATGCTGAGCAGGCAAAGTTAGTGTGGGCTCAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTTTTGGCAAATGCTGAGCAGGCAAAGTTAGTGTGGGCTCAGG  1073

seq1  GAGGCTGCCAGGGGAAGAGGAATTC  1125
      |||||||||||||||||||||||||
seq2  GAGGCTGCCAGGGGAAGAGGAATTC  1098