BAC Information

Click to search

BAC

Clone NameB6Ng01-159J08
Chromosome2 (Build37)
Map Location 108,356,922 - 108,470,467
singlet/doubletdoublet
Overlap geneLOC100043078, LOC668790
Upstream genenone
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159J08.bB6Ng01-159J08.g
ACCDH953205DH953206
length1,070860
definitionDH953205|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J08, 5' end.DH953206|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,356,922 - 108,358,001)(108,469,608 - 108,470,467)
sequence
gaattctggcctttcttctttgtaggattcagaaaaacaaatcaagaagg
ggagccaatgtttgcctgtgtaaattgactcattatagtgtgtattcaaa
acataacattggtcaactgggagccattctcattgtaaagcttcctagcc
agaggacagctgagagaactttgccaatatgcccactgttcaaaagatta
taagccaacattttacatgtgggtgggacaatgtgctttggagaatataa
acaggaagctaagcctggaggcctggctgagcagcatttttttcttatgc
ctctgtgtttcaagctatttcgcttctacatttatgtcatattaacctaa
taaataagtacaatgtgggatatgagatttttctagttctggagctaaaa
cacactctatagaaatccatcactttaacatttattatttttttctgttg
taccactgggttgtcaataaaagcagaacaaatgaatgttagcctttgat
attttaccacactataagaatgatccaatttgtaaggtgaaggcaatcat
tttgggtttcaagaacactttaaggctaagggaccagtaaagatgcccga
gttccttaaaacaaagatgtagcatgctctgctcacatttcaaacaaaac
ttggaaaattaaattgatttaaagaggaatttttctccccaggagaatct
atttgcacagcatctagtttcattgctcttatactccatgagtcatcagg
aagtaacaagaagtcacacaagaacacagagtcctcctggggctttgaaa
caaatggatctgaaactgcacagttgatcctacccagaggatgatgtata
cagacattcagcataacgagagttggatgagtgcaattaaatgtaagcat
tgcacctgtggaatctggaacacaatgttttactgtgaatgatgaggcta
gtgtgggtggttttcataattcagacctgctatcttccttctttgtcatg
tggcaaatgtagtacatactcacttgtagtaatgggatgagaatcacaaa
caatgtttcagttcttcaca
gaattctgatctaaatatattctattttccacttcaagttttcagctttc
aaattcccatttatttacttttcataaactatgaccatctttattttctt
gtactttacctgatatatcttttgttttcatgattatactgatttcaatt
tctttaatatctgtatagggcaacataaaacacttgaaatcatctatagg
tttgtttttctatccactctttactttggggtttagtcaattgctttcac
ttttctgtaaatgagaaactattaattgatagatgaaactgtttagatct
tcacaatgtttaagtcccccacctccctcaggcaggcagattaccattgt
cctgttgagacttatttgtaattattgttaggacaagctcacttagaatt
tgttagtgtgcatatccaggtattgtcctcacattggagaacgtgtccca
ctgattttagagtagtggccttctgagtctcagttgagaaatactgtgat
gtttgcaagtatatttttattttggtagtgattaaaaatgagcatttagg
ttacagattttaactagtctttctttatgctcttttgatagaaaaaaatg
tagaagaaaatatacttgagttttaggagtcagcagctgaaaggggatag
gtaactgtaagtctttggtcttctttattctttccaatactggctcctat
gaaagctctgaaatccaatctctatttccaaacaatttgttcccttttta
tttattcattttctctttatgggtgtgtatgatatatgtgctcagtatgt
gtacaggtgtgtgtggtggaagtgcatggtggcatgatgtgtgtgaatat
gttttgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108356922_108358001
seq2: B6Ng01-159J08.b_45_1114

seq1  GAATTCTGGCCTTTCTTCTTTGTAGGATTCAGAAAAACAAATCAAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTTTCTTCTTTGTAGGATTCAGAAAAACAAATCAAGAAGG  50

seq1  GGAGCCAATGTTTGCCTGTGTAAATTGACTCATTATAGTGTGTATTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAATGTTTGCCTGTGTAAATTGACTCATTATAGTGTGTATTCAAA  100

seq1  ACATAACATTGGTCAACTGGGAGCCATTCTCATTGTAAAGCTTCCTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACATTGGTCAACTGGGAGCCATTCTCATTGTAAAGCTTCCTAGCC  150

seq1  AGAGGACAGCTGAGAGAACTTTGCCAATATGCCCACTGTTCAAAAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAGCTGAGAGAACTTTGCCAATATGCCCACTGTTCAAAAGATTA  200

seq1  TAAGCCAACATTTTACATGTGGGTGGGACAATGTGCTTTGGAGAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAACATTTTACATGTGGGTGGGACAATGTGCTTTGGAGAATATAA  250

seq1  ACAGGAAGCTAAGCCTGGAGGCCTGGCTGAGCAGCATTTTTTTCTTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCTAAGCCTGGAGGCCTGGCTGAGCAGCATTTTTTTCTTATGC  300

seq1  CTCTGTGTTTCAAGCTATTTCGCTTCTACATTTATGTCATATTAACCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTTCAAGCTATTTCGCTTCTACATTTATGTCATATTAACCTAA  350

seq1  TAAATAAGTACAATGTGGGATATGAGATTTTTCTAGTTCTGGAGCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTACAATGTGGGATATGAGATTTTTCTAGTTCTGGAGCTAAAA  400

seq1  CACACTCTATAGAAATCCATCACTTTAACATTTATTATTTTTTTCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTATAGAAATCCATCACTTTAACATTTATTATTTTTTTCTGTTG  450

seq1  TACCACTGGGTTGTCAATAAAAGCAGAACAAATGAATGTTAGCCTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGGGTTGTCAATAAAAGCAGAACAAATGAATGTTAGCCTTTGAT  500

seq1  ATTTTACCACACTATAAGAATGATCCAATTTGTAAGGTGAAGGCAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCACACTATAAGAATGATCCAATTTGTAAGGTGAAGGCAATCAT  550

seq1  TTTGGGTTTCAAGAACACTTTAAGGCTAAGGGACCAGTAAAGATGCCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCAAGAACACTTTAAGGCTAAGGGACCAGTAAAGATGCCCGA  600

seq1  GTTCCTTAAAACAAAGATGTAGCATGCTCTGCTCACATTTCAAACAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAAAACAAAGATGTAGCATGCTCTGCTCACATTTCAAACAAAAC  650

seq1  TTGGAAAATTAAATTGATTTAAAGAGGAATTTTTCTCCCCAGGAGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATTAAATTGATTTAAAGAGGAATTTTTCTCCCCAGGAGAATCT  700

seq1  ATTTGCACAGCATCTAGTTTCATTGCTCTTATACTCCATGAGTCATCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACAGCATCTAGTTTCATTGCTCTTATACTCCATGAGTCATCAGG  750

seq1  AAGTAACAAGAAGTCACACAAGAACACAGAGTCCTCCTGGGGCTTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAAGAAGTCACACAAGAACACAGAGTCCTCCTGGGGCTTTGAAA  800

seq1  CAAATGGATCTGAAACTGCACAGTTGATCCTACCCAGAGGATGATGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGATCTGAAACTGCACAGTTGATCCTACCCAGAGGATGATGTATA  850

seq1  CAGACATTCAGCATAAGGAGAGTTGGATGAGTGCAATTAAATGTAAGCAT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGACATTCAGCATAACGAGAGTTGGATGAGTGCAATTAAATGTAAGCAT  900

seq1  TGCACCTGTGGAATCTGGAACACAATGTTTTACTGTGAATGATGAGGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGTGGAATCTGGAACACAATGTTTTACTGTGAATGATGAGGCTA  950

seq1  GTGTGGGTGGTTTTCATTAATTCAGAACCTTGCTATCTTCCTTCTTTGTC  1000
      |||||||||||||||| |||||||||  | ||||||||||||||||||||
seq2  GTGTGGGTGGTTTTCA-TAATTCAGA--CCTGCTATCTTCCTTCTTTGTC  997

seq1  ATGTGGCAAATGTTAGTACATTAACTCAACTTGTAGGTAATGGGATGGAG  1050
      |||||||||||| ||||||||  |||| ||||||| |||||||||| |||
seq2  ATGTGGCAAATG-TAGTACAT--ACTC-ACTTGTA-GTAATGGGAT-GAG  1041

seq1  AAATCACAAACAATGTTTCAGTCCTTCACA  1080
       ||||||||||||||||||||| |||||||
seq2  -AATCACAAACAATGTTTCAGTTCTTCACA  1070

seq1: chr2_108469608_108470467
seq2: B6Ng01-159J08.g_66_925 (reverse)

seq1  TACACAAAACATATTCACACACATCATGCCACCATGCACTTCCACCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAACATATTCACACACATCATGCCACCATGCACTTCCACCACAC  50

seq1  ACACCTGTACACATACTGAGCACATATATCATACACACCCATAAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTACACATACTGAGCACATATATCATACACACCCATAAAGAGAA  100

seq1  AATGAATAAATAAAAAGGGAACAAATTGTTTGGAAATAGAGATTGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAAATAAAAAGGGAACAAATTGTTTGGAAATAGAGATTGGATTT  150

seq1  CAGAGCTTTCATAGGAGCCAGTATTGGAAAGAATAAAGAAGACCAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTTCATAGGAGCCAGTATTGGAAAGAATAAAGAAGACCAAAGAC  200

seq1  TTACAGTTACCTATCCCCTTTCAGCTGCTGACTCCTAAAACTCAAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTACCTATCCCCTTTCAGCTGCTGACTCCTAAAACTCAAGTATA  250

seq1  TTTTCTTCTACATTTTTTTCTATCAAAAGAGCATAAAGAAAGACTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTACATTTTTTTCTATCAAAAGAGCATAAAGAAAGACTAGTTA  300

seq1  AAATCTGTAACCTAAATGCTCATTTTTAATCACTACCAAAATAAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTAACCTAAATGCTCATTTTTAATCACTACCAAAATAAAAATAT  350

seq1  ACTTGCAAACATCACAGTATTTCTCAACTGAGACTCAGAAGGCCACTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAACATCACAGTATTTCTCAACTGAGACTCAGAAGGCCACTACT  400

seq1  CTAAAATCAGTGGGACACGTTCTCCAATGTGAGGACAATACCTGGATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCAGTGGGACACGTTCTCCAATGTGAGGACAATACCTGGATATG  450

seq1  CACACTAACAAATTCTAAGTGAGCTTGTCCTAACAATAATTACAAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACAAATTCTAAGTGAGCTTGTCCTAACAATAATTACAAATAAG  500

seq1  TCTCAACAGGACAATGGTAATCTGCCTGCCTGAGGGAGGTGGGGGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGGACAATGGTAATCTGCCTGCCTGAGGGAGGTGGGGGACTTA  550

seq1  AACATTGTGAAGATCTAAACAGTTTCATCTATCAATTAATAGTTTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTGAAGATCTAAACAGTTTCATCTATCAATTAATAGTTTCTCAT  600

seq1  TTACAGAAAAGTGAAAGCAATTGACTAAACCCCAAAGTAAAGAGTGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAAGTGAAAGCAATTGACTAAACCCCAAAGTAAAGAGTGGATA  650

seq1  GAAAAACAAACCTATAGATGATTTCAAGTGTTTTATGTTGCCCTATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAACCTATAGATGATTTCAAGTGTTTTATGTTGCCCTATACAG  700

seq1  ATATTAAAGAAATTGAAATCAGTATAATCATGAAAACAAAAGATATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGAAATTGAAATCAGTATAATCATGAAAACAAAAGATATATCA  750

seq1  GGTAAAGTACAAGAAAATAAAGATGGTCATAGTTTATGAAAAGTAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTACAAGAAAATAAAGATGGTCATAGTTTATGAAAAGTAAATAA  800

seq1  ATGGGAATTTGAAAGCTGAAAACTTGAAGTGGAAAATAGAATATATTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTTGAAAGCTGAAAACTTGAAGTGGAAAATAGAATATATTTAG  850

seq1  ATCAGAATTC  860
      ||||||||||
seq2  ATCAGAATTC  860