BAC Information

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BAC

Clone NameB6Ng01-159K02
Chromosome2 (Build37)
Map Location 12,720,721 - 12,827,257
singlet/doubletdoublet
Overlap geneLOC100040837
Upstream geneEG635919, LOC667247, Itga8, 2310047O13Rik
Downstream genePter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K02.bB6Ng01-159K02.g
ACCDH953239DH953240
length1,1021,005
definitionDH953239|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K02, 5' end.DH953240|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,720,721 - 12,721,832)(12,826,691 - 12,827,257)
sequence
gaattctgttctcatttaagacctctaagcaaatgacctgatatgagaaa
acttgttgctaggattgaaaacaaaagttttgatattgtaagcctgctcc
tgaatagcttctttaaatattgctttaataacatctctcttcccccttct
gggaactcatggtttctaccaaggtacagagaattctttgactgtgcagc
aatgttttgccagactttggagctggttactgtccaagcttatcaaaatg
ctattgtgatgtcaagacagcagcaagatgtttttggaaagcctaattac
agaggctaggagatgagtttgaaaggagaaaatgctgtccctaagtaaga
taaataatggaactttacaaatgtatattcccatcttcctattctcctct
gttgccaacaggcagccaagaaatcagcagggttctctcaaaggctgtct
ttccattaggacagcaatggcattggcaatgaaaggtgagacagaagggc
aagcaaaatggagcccagtgcttccctggaaccaagtttattatgcgaag
aacatacttgttgctatgctaatggtacaggattatttttctctatttaa
aaatttccagcacaaatgaggcggtgtagagtggctgttacatcatgtcg
ctttctgaaaatgctggtggctgctctccatcgacacctcctcctcttcc
acatggtgacaggctgcttttgctttttacaaagtggtcccatttgcttg
gaaaacatcatggcactcaatcaggatttataatagccaaacttcatcag
gactcaataaagataaagatgtctgggtctggactgtgctccagtcatgt
tctttagcttctcatctctccacgtgtcacagttccagagatgctctacc
agcacctgggggagaaaatggaccgtttaaatggaaggaatctttataat
tggaatatttgtttagctattttcctcaagttgagttctactgtatagca
aacataattaaggataaggaatggaaaggaaggagatcttgttgagaaaa
attttagtcaaggataaggtactattagtgctagatatatgagccttaaa
ac
gaattcatcactagtttggagcatccttgccatggttgcttctgagacaa
gttgccttcctaactttgatacccttaaatctaggccagggtccctggat
cctgctctttaaaaggacccacattcataaacactgggacatgtttgata
tttaggatcttgcacctagtgctggcatagctcgatataatccaaagcat
ctgtttcagggacaaacatatccaagctccaggaaaacacctctccatct
ctcttgcactgtgtctttgaaagaaaaaaaaaaagacaagagctgatgct
gtgaatacctatgggaagcaaccttaacaaaccaagggatgggcagggct
tccaaagacagacagaattttagcaacaattagttaaatacagaggaaat
tgacttcttgatccatcaaaggattctttcattgagaaatcacactcctt
atcagtgcggggcatcccttttgctgcttagctttgtattctgacttgta
ttcctaaagatagtgtacttgtggtttcatgtgatatgtactacaattac
acatgaaagtttgggaaaaaatgtcttatgaattcattgattttgcattt
ttatatgggttgttctactcagtcattattgtttctagaaacagaatatt
gttgttctttccaattctaatcaagattttatgtactggcagatgaaata
tgcatataaccagtacctcgttgcaagggaggctgtaaagtcaagtattt
gtcatcttaagctcagtagtaagaagtagacttggagtcacaccaatccc
taaaggctgaatactgcccatatacaagaagcggtcgagatactgggtag
ccaaaccaagtcaagccaggtaacaagagaactttctggtagtcatttac
aatttaaaaatagattatgagttaatgtgagctactggtttgtactgggt
atgatacttctttaccactcttatcagaagtttgtacatcataaacatga
tattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_12720721_12721832
seq2: B6Ng01-159K02.b_44_1145

seq1  GAATTCTGTTCTCATTTAAGACCTCTAAGCAAATGACCTGATATGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTCATTTAAGACCTCTAAGCAAATGACCTGATATGAGAAA  50

seq1  ACTTGTTGCTAGGATTGAAAACAAAAGTTTTGATATTGTAAGCCTGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGCTAGGATTGAAAACAAAAGTTTTGATATTGTAAGCCTGCTCC  100

seq1  TGAATAGCTTCTTTAAATATTGCTTTAATAACATCTCTCTTCCCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCTTCTTTAAATATTGCTTTAATAACATCTCTCTTCCCCCTTCT  150

seq1  GGGAACTCATGGTTTCTACCAAGGTACAGAGAATTCTTTGACTGTGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCATGGTTTCTACCAAGGTACAGAGAATTCTTTGACTGTGCAGC  200

seq1  AATGTTTTGCCAGACTTTGGAGCTGGTTACTGTCCAAGCTTATCAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGCCAGACTTTGGAGCTGGTTACTGTCCAAGCTTATCAAAATG  250

seq1  CTATTGTGATGTCAAGACAGCAGCAAGATGTTTTTGGAAAGCCTAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGATGTCAAGACAGCAGCAAGATGTTTTTGGAAAGCCTAATTAC  300

seq1  AGAGGCTAGGAGATGAGTTTGAAAGGAGAAAATGCTGTCCCTAAGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTAGGAGATGAGTTTGAAAGGAGAAAATGCTGTCCCTAAGTAAGA  350

seq1  TAAATAATGGAACTTTACAAATGTATATTCCCATCTTCCTATTCTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGGAACTTTACAAATGTATATTCCCATCTTCCTATTCTCCTCT  400

seq1  GTTGCCAACAGGCAGCCAAGAAATCAGCAGGGTTCTCTCAAAGGCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAACAGGCAGCCAAGAAATCAGCAGGGTTCTCTCAAAGGCTGTCT  450

seq1  TTCCATTAGGACAGCAATGGCATTGGCAATGAAAGGTGAGACAGAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAGGACAGCAATGGCATTGGCAATGAAAGGTGAGACAGAAGGGC  500

seq1  AAGCAAAATGGAGCCCAGTGCTTCCCTGGAACCAAGTTTATTATGCGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATGGAGCCCAGTGCTTCCCTGGAACCAAGTTTATTATGCGAAG  550

seq1  AACATACTTGTTGCTATGCTAATGGTACAGGATTATTTTTCTCTATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTTGTTGCTATGCTAATGGTACAGGATTATTTTTCTCTATTTAA  600

seq1  AAATTTCCAGCACAAATGAGGCGGTGTAGAGTGGCTGTTACATCATGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCAGCACAAATGAGGCGGTGTAGAGTGGCTGTTACATCATGTCG  650

seq1  CTTTCTGAAAATGCTGGTGGCTGCTCTCCATCGACACCTCCTCCTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAAATGCTGGTGGCTGCTCTCCATCGACACCTCCTCCTCTTCC  700

seq1  ACATGGTGACAGGCTGCTTTTGCTTTTTACAAAGTGGTCCCATTTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGACAGGCTGCTTTTGCTTTTTACAAAGTGGTCCCATTTGCTTG  750

seq1  GAAAACATCATGGCACTCAATCAGGATTTATAATAGCCAAACTTCATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCATGGCACTCAATCAGGATTTATAATAGCCAAACTTCATCAG  800

seq1  GACTCAATAAAGATAAAGATGTCTGGGTCTGGACTGTGCTCCAGTCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATAAAGATAAAGATGTCTGGGTCTGGACTGTGCTCCAGTCATGT  850

seq1  TCTTTAGCTTCTCATCTCTCCACGTGTCACAGTTCCAGAGATGCTCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCTTCTCATCTCTCCACGTGTCACAGTTCCAGAGATGCTCTACC  900

seq1  AGCACCTGGGGGAGAAAATGGACCGTTTAAATGGAAGGAATCTTTATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGGGGAGAAAATGGACCGTTTAAATGGAAGGAATCTTTATAAT  950

seq1  TGGAATATTTTGTTTAAGCTATTTTCCTCAAGTTGAGTTCTACTGTATAG  1000
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGAATA-TTTGTTT-AGCTATTTTCCTCAAGTTGAGTTCTACTGTATAG  998

seq1  CAAAACATAA-TAAAGATAAAGAAAATGAAAAAGAAAGGAGGAATCTTGT  1049
      | |||||||| ||| ||||| |  ||||  |||| ||||||  |||||| 
seq2  C-AAACATAATTAAGGATAAGG--AATG-GAAAGGAAGGAG--ATCTTG-  1041

seq1  TTGAGAAAAATTTTAGTCAAGGATAAGGTTACATATAAGTGCTAGATATA  1099
      |||||||||||||||||||||||||||| ||| ||| |||||||||||| 
seq2  TTGAGAAAAATTTTAGTCAAGGATAAGG-TAC-TATTAGTGCTAGATAT-  1088

seq1  ATGAGCC-TAAAAC  1112
      ||||||| ||||||
seq2  ATGAGCCTTAAAAC  1102

seq1: chr2_12826691_12827257
seq2: B6Ng01-159K02.g_66_632 (reverse)

seq1  TTCCCAAACTTTCATGTGTAATTGTAGTACATATCACATGAAACCACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACTTTCATGTGTAATTGTAGTACATATCACATGAAACCACAAG  50

seq1  TACACTATCTTTAGGAATACAAGTCAGAATACAAAGCTAAGCAGCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATCTTTAGGAATACAAGTCAGAATACAAAGCTAAGCAGCAAAAG  100

seq1  GGATGCCCCGCACTGATAAGGAGTGTGATTTCTCAATGAAAGAATCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCCGCACTGATAAGGAGTGTGATTTCTCAATGAAAGAATCCTTT  150

seq1  GATGGATCAAGAAGTCAATTTCCTCTGTATTTAACTAATTGTTGCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCAAGAAGTCAATTTCCTCTGTATTTAACTAATTGTTGCTAAAA  200

seq1  TTCTGTCTGTCTTTGGAAGCCCTGCCCATCCCTTGGTTTGTTAAGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTCTTTGGAAGCCCTGCCCATCCCTTGGTTTGTTAAGGTTGC  250

seq1  TTCCCATAGGTATTCACAGCATCAGCTCTTGTCTTTTTTTTTTTCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGGTATTCACAGCATCAGCTCTTGTCTTTTTTTTTTTCTTTCA  300

seq1  AAGACACAGTGCAAGAGAGATGGAGAGGTGTTTTCCTGGAGCTTGGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGTGCAAGAGAGATGGAGAGGTGTTTTCCTGGAGCTTGGATAT  350

seq1  GTTTGTCCCTGAAACAGATGCTTTGGATTATATCGAGCTATGCCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCCTGAAACAGATGCTTTGGATTATATCGAGCTATGCCAGCACT  400

seq1  AGGTGCAAGATCCTAAATATCAAACATGTCCCAGTGTTTATGAATGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAAGATCCTAAATATCAAACATGTCCCAGTGTTTATGAATGTGGG  450

seq1  TCCTTTTAAAGAGCAGGATCCAGGGACCCTGGCCTAGATTTAAGGGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAAAGAGCAGGATCCAGGGACCCTGGCCTAGATTTAAGGGTATC  500

seq1  AAAGTTAGGAAGGCAACTTGTCTCAGAAGCAACCATGGCAAGGATGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGGAAGGCAACTTGTCTCAGAAGCAACCATGGCAAGGATGCTCC  550

seq1  AAACTAGTGATGAATTC  567
      |||||||||||||||||
seq2  AAACTAGTGATGAATTC  567