BAC Information

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BAC

Clone NameB6Ng01-160A18
Chromosome2 (Build37)
Map Location 41,673,646 - 41,769,953
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160A18.bB6Ng01-160A18.g
ACCDH953530DH953531
length1,0691,113
definitionDH953530|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A18, 5' end.DH953531|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,673,646 - 41,674,737)(41,768,825 - 41,769,953)
sequence
gaattcatgttaggagtattttcaccatgctagaaggcagatgaatttca
tcatggaagggtacacaggactttcactatgtagcaagcaagtgactttt
cccatgtagcaataagataatttcaaatttcatcaaagagagagcaaagg
tatctaaataggtgtgtctgcaagcaaatgcaaaccatcatatttcaaat
gaagtgcaacagaagaacttctgaaaaaatatgtacatagactgaagaat
accaacacttctgaggtaaaagatatatatatatatatatatatatatat
ataattcaaaaattgacaaatataaaagtacaaaaaacctttggtttggg
cttattttttttagagagataaaagatagtagctacttttcaatactcac
attttgaacatgaagaaattaagcatatagatactaagtaacagtgtaga
gactacagaagtgttaatattagcaaggcactcaatgtttaaaagacaga
caatacattcaggtatttaaatgacagaacggtggctttgtgatgcaagg
agctttgttctattcttttcactaatgatcttagattttgactgggttat
gaatgggttcatgatagatgcacatacatgattttcttaatccattgtaa
tatgtgtatgagaatcaagtatttgttaataatgttataatatttgttta
ttctggagagatggtgcagcagttacaggtacttgctactcttaatgagt
aaccacatttggctagcagctccctcccacatcagacagtattcaatttc
atataactccatttctaagggatctaatattatcttctgtaaatcacgca
gatcaatcatgcagtgatgtgcacacatgaatgggatcatacacacacat
gcacacacacacaccacatatagagttttaggagtactgagacactattt
catttgagaaatcatgtacttactcttcatagaatctgaaaataaactat
gtttgcattctcatatttcccttttcatggcaaggcactattataatgtg
cacacaccactctccacag
gaattcattgttttcatgtctttaatattaatttatggttggtaatttgg
cagaaatcttctattccaatttcagtatggatatcttctttaactttcct
gaacatatttataatctttccctgatatctttattttgtatattagctaa
gtgacttttctcaaagaatattataatgggagttattatttcttaagtcc
caggtcatttttcatgaagtcaaaaaaatatcattttaaaatggtctctt
ccaaaataagtgctaaaaaggatatataatttcacttactctgtatcaca
ccagtggtggagtcaacactagtcatcacaggaaggaccaagtaatactc
atctctcaaaggaaaaggagcagcgagttccagcgtcaagaattaaagtg
agtctaaatatgagaagtcagcaaagaatgatgtctaggaatagaaaata
aaaagagttatgctgattagactcatcaaatttcctcctgaaatgtccaa
atatgtgcatatgtattgattttaaaatgccctgaagataattcatagtt
cattggtggcaaacctccgtggtataaaattcttcatgttcaagtttaca
ttagactggtagtcttactctaggacaaacatactccccaattctttagc
ggttatctttcctcaactccattgcatccaactacttatttacagattcc
caacttgaattacagatatgttggaggcagcattatggtgctgactacat
accatactcaatctttagaaaagtgaaattttaggatctttagacttact
ttaaatgcatgtatctttgttattaattatcctgattcaaattattattc
agtttcccattcctaaatctataggaaacaatgagatggtataagactat
tttaaaaacattttctatgagagccttaaatttttacaaaagcatgagaa
tatttgactacatttcaaatgtgctgaatacagtcacatacaccatttga
caaaaagagatgtatgttatttatagggagtaacattacatcctctgtta
aattgttgggagcttaaagatctagcatgtgaatatgcctccacaaagaa
aagtggctgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41673646_41674737
seq2: B6Ng01-160A18.b_45_1113

seq1  GAATTCATGTTAGGAGTATTTTCACCATG-TAGAAGGCAGATGAATTTCA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCATGTTAGGAGTATTTTCACCATGCTAGAAGGCAGATGAATTTCA  50

seq1  TCATGGAAGGGTACACAGGACTTTCACTATGTAGCAAGCAAGTGACTTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAGGGTACACAGGACTTTCACTATGTAGCAAGCAAGTGACTTTT  100

seq1  CCCATGTAGCAATAAGATAATTTCAAATTTCATCAAAGAGAGAGCAAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGCAATAAGATAATTTCAAATTTCATCAAAGAGAGAGCAAAGG  150

seq1  TATCTAAATAGGTGTGTCTGCAAGCAAATGCAAACCATCATATTTCAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAATAGGTGTGTCTGCAAGCAAATGCAAACCATCATATTTCAAAT  200

seq1  GAAGTGCAACAGAAGAACTTCTGAAAAAATATGTACATAGACTGAAGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCAACAGAAGAACTTCTGAAAAAATATGTACATAGACTGAAGAAT  250

seq1  ACCAACACTTCTGAGGTAAAAGATATATATATATATATATATATATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACTTCTGAGGTAAAAGATATATATATATATATATATATATATAT  300

seq1  ATAATTCAAAAATTGACAAATATAAAAGTACAAAAAACCTTTGGTTTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAAAAATTGACAAATATAAAAGTACAAAAAACCTTTGGTTTGGG  350

seq1  CTTATTTTTTTTAGAGAGATAAAAGATAGTAGCTACTTTTCAATACTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTTTTAGAGAGATAAAAGATAGTAGCTACTTTTCAATACTCAC  400

seq1  ATTTTGAACATGAAGAAATTAAGCATATAGATACTAAGTAACAGTGTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAACATGAAGAAATTAAGCATATAGATACTAAGTAACAGTGTAGA  450

seq1  GACTACAGAAGTGTTAATATTAGCAAGGCACTCAATGTTTAAAAGACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGAAGTGTTAATATTAGCAAGGCACTCAATGTTTAAAAGACAGA  500

seq1  CAATACATTCAGGTATTTAAATGACAGAACGGTGGCTTTGTGATGCAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTCAGGTATTTAAATGACAGAACGGTGGCTTTGTGATGCAAGG  550

seq1  AGCTTTGTTCTATTCTTTTCACTAATGATCTTAGATTTTGACTGGGTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTCTATTCTTTTCACTAATGATCTTAGATTTTGACTGGGTTAT  600

seq1  GAATGGGTTCATGATAGATGCACATACATGATTTTCTTAATCCATTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTTCATGATAGATGCACATACATGATTTTCTTAATCCATTGTAA  650

seq1  TATGTGTATGAGAATCAAGTATTTGTTAATAATGTTATAATATTTGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGAGAATCAAGTATTTGTTAATAATGTTATAATATTTGTTTA  700

seq1  TTCTGGAGAGATGGTGCAGCAGTTACAGGTACTTGCTACTCTTAATGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGAGATGGTGCAGCAGTTACAGGTACTTGCTACTCTTAATGAGT  750

seq1  AACCACATTTGGCTAGCAGCTCCCTCCCACATCAGACAGTATTCAATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATTTGGCTAGCAGCTCCCTCCCACATCAGACAGTATTCAATTTC  800

seq1  ATATAACTCCATTTCTAAGGGATCTAATATTATCTTCTGTAAATCACGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTCCATTTCTAAGGGATCTAATATTATCTTCTGTAAATCACGCA  850

seq1  GATCAATCATGCAGGTGATGTGCACACATGAATGGAATCATACACACACA  899
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GATCAATCATGCA-GTGATGTGCACACATGAATGGGATCATACACACACA  899

seq1  TGCACACACACACACCACATATAAGAGGTTTTAAGGAAGTACTGAGAACA  949
      |||||||||||||||||||||| ||| ||||||  | ||||||||||   
seq2  TGCACACACACACACCACATAT-AGA-GTTTTA--GGAGTACTGAGA--C  943

seq1  ACTATTTCATTTTGAGGAAAAATCATGTAACTTAACTCTTCAATAGAATC  999
      ||||||||||||    || ||||||||| |||| ||||||| ||||||||
seq2  ACTATTTCATTT----GAGAAATCATGT-ACTT-ACTCTTC-ATAGAATC  986

seq1  TGAAAATAAACTATGTTTGGCATTTCTCAATTAATTTCCCTTTTTCCAAT  1049
      |||||||||||||||||| ||| ||||||    |||||||||||    ||
seq2  TGAAAATAAACTATGTTT-GCA-TTCTCA---TATTTCCCTTTT---CAT  1028

seq1  GGCAGGGCACTAATTATAAATGTGCACACACCACTCTCCACAG  1092
      |||| |||||| ||||| |||||||||||||||||||||||||
seq2  GGCAAGGCACT-ATTAT-AATGTGCACACACCACTCTCCACAG  1069

seq1: chr2_41768825_41769953
seq2: B6Ng01-160A18.g_66_1178 (reverse)

seq1  AAGGCA---ACTTTTCTCTGTGGGAGCATATTCACTATGCTAGATCTTT-  46
      ||||||   |||||||| |||||  |||||||||| ||||||||||||| 
seq2  AAGGCAGCCACTTTTCTTTGTGGAGGCATATTCAC-ATGCTAGATCTTTA  49

seq1  AGCTCCCAAC-ATTTAACAGAAGGATGGTAAATTAATTTTACTTCCCTAT  95
      |||||||||| ||||||||| ||||||      |||| |||| |||||||
seq2  AGCTCCCAACAATTTAACAG-AGGATG------TAATGTTAC-TCCCTAT  91

seq1  -AATAACATTACATCTCTTTTTTGTCAAATGGTGTATGTTGACTGTATTC  144
       ||||||| |||||||| |||||||||||||||||||| |||||||||||
seq2  AAATAACA-TACATCTC-TTTTTGTCAAATGGTGTATG-TGACTGTATTC  138

seq1  AGCACATTTTGAAATGTAGTCAAAATATTTCTCATGCTTTTTGTAAAAAA  194
      |||||| |||||||||||||| ||||| ||||||||| |||||| |||||
seq2  AGCACA-TTTGAAATGTAGTC-AAATA-TTCTCATGC-TTTTGT-AAAAA  183

seq1  TTTAAGGCTTCTTCATAGAAAATGTTTTTTAAAATAGTCTTTATACCATC  244
      |||||||||   |||||||||||| |||||||||||||| ||||||||||
seq2  TTTAAGGCT--CTCATAGAAAATG-TTTTTAAAATAGTC-TTATACCATC  229

seq1  TCATTGTTTTCCTATAGATTTAGGAATGGGAAACTGAATAATAATTTGAA  294
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTG-TTTCCTATAGATTTAGGAATGGGAAACTGAATAATAATTTGAA  278

seq1  TCAGGATAATTAATAACAAAGATACATGCATTTAAAGTAAGTCTAAAGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAATTAATAACAAAGATACATGCATTTAAAGTAAGTCTAAAGAT  328

seq1  CCTAAAATTTCACTTTTCTAAAGATTGAGTATGGTATGTAGTCAGCACCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTTCACTTTTCTAAAGATTGAGTATGGTATGTAGTCAGCACCA  378

seq1  TAATGCTGCCTCCAACATATCTGTAATTCAAGTTGGGAATCTGTAAATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGCCTCCAACATATCTGTAATTCAAGTTGGGAATCTGTAAATAA  428

seq1  GTAGTTGGATGCAATGGAGTTGAGGAAAGATAACCGCTAAAGAATTGGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGATGCAATGGAGTTGAGGAAAGATAACCGCTAAAGAATTGGGG  478

seq1  AGTATGTTTGTCCTAGAGTAAGACTACCAGTCTAATGTAAACTTGAACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTTGTCCTAGAGTAAGACTACCAGTCTAATGTAAACTTGAACAT  528

seq1  GAAGAATTTTATACCACGGAGGTTTGCCACCAATGAACTATGAATTATCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTTATACCACGGAGGTTTGCCACCAATGAACTATGAATTATCT  578

seq1  TCAGGGCATTTTAAAATCAATACATATGCACATATTTGGACATTTCAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCATTTTAAAATCAATACATATGCACATATTTGGACATTTCAGGA  628

seq1  GGAAATTTGATGAGTCTAATCAGCATAACTCTTTTTATTTTCTATTCCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGATGAGTCTAATCAGCATAACTCTTTTTATTTTCTATTCCTA  678

seq1  GACATCATTCTTTGCTGACTTCTCATATTTAGACTCACTTTAATTCTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATTCTTTGCTGACTTCTCATATTTAGACTCACTTTAATTCTTGA  728

seq1  CGCTGGAACTCGCTGCTCCTTTTCCTTTGAGAGATGAGTATTACTTGGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAACTCGCTGCTCCTTTTCCTTTGAGAGATGAGTATTACTTGGTC  778

seq1  CTTCCTGTGATGACTAGTGTTGACTCCACCACTGGTGTGATACAGAGTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGATGACTAGTGTTGACTCCACCACTGGTGTGATACAGAGTAA  828

seq1  GTGAAATTATATATCCTTTTTAGCACTTATTTTGGAAGAGACCATTTTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTATATATCCTTTTTAGCACTTATTTTGGAAGAGACCATTTTAA  878

seq1  AATGATATTTTTTTGACTTCATGAAAAATGACCTGGGACTTAAGAAATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTTTTTTGACTTCATGAAAAATGACCTGGGACTTAAGAAATAA  928

seq1  TAACTCCCATTATAATATTCTTTGAGAAAAGTCACTTAGCTAATATACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCATTATAATATTCTTTGAGAAAAGTCACTTAGCTAATATACAA  978

seq1  AATAAAGATATCAGGGAAAGATTATAAATATGTTCAGGAAAGTTAAAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATATCAGGGAAAGATTATAAATATGTTCAGGAAAGTTAAAGAA  1028

seq1  GATATCCATACTGAAATTGGAATAGAAGATTTCTGCCAAATTACCAACCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCATACTGAAATTGGAATAGAAGATTTCTGCCAAATTACCAACCA  1078

seq1  TAAATTAATATTAAAGACATGAAAACAATGAATTC  1129
      |||||||||||||||||||||||||||||||||||
seq2  TAAATTAATATTAAAGACATGAAAACAATGAATTC  1113