BAC Information

Click to search

BAC

Clone NameB6Ng01-160D02
Chromosome2 (Build37)
Map Location 84,209,196 - 84,210,384
singlet/doubletsinglet
Overlap geneCalcrl
Upstream genePpia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D02.bB6Ng01-160D02.g
ACCDH953636DH953637
length1,1441,165
definitionDH953636|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D02, 5' end.DH953637|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttaaccaaagggggggaaattgaacagaaactataagtttat
ttaactctttttattttatttttttattattaaagagaaggttacaaaga
tctgtgaccaagatggacactggtttcggcatccggatagtaatagaaca
tggaccaactacaccctgtgtaataacagcacgcatgagaaagtgaaggt
atgtaaccagcgtgagttgaaattggacttacattttaaaatcagagcaa
tgcagtactagaaaaaatgcagtgttccattccacagtaaaactgtttcc
taatatcatttgagaagaataatgaaaaagaacctgtggaaaaactgcta
ttaatgctgtcattacactaggaaagtaaccctgttagataactgtgcat
ttataagtcaatgcctcagaatcagggtggattctgattttccaaagaaa
atatatcttaaaagtgtaatataagggaaaactctcatttctagtgaaat
tctagaattacctcaaaaattgttcttaggcgaacaggatatgctcagtg
ggatttaaacctccccctgctcctcagtctaactggctgtgcaggacact
ctcactcttgttcctgtgttgaaacttaaagccatggctaaggacaacgg
tcacagaggaaagcgtgattgcgatatttttatgtatttgcagttgtgtg
tgtgtatgattgaaagtgtgaacagtgacatgtgcttcctgtttggcact
ttatctgccccatggccacggataagaaaaccctcttgtgctaaacgaga
taagtgtactttcttccagaggccaggatagtgcaatcactcaaccacaa
gctgtcactgtgttatatatcatgtatgctctgcctattttagaggtgtt
taagttaccaacccaaacccaaacccaacccaaacccaaacccaaaccaa
acccaaacccaaacccaaaccaaacccaaacccaccacaaacacctacta
cagcagcagcagcagcaacaaccattaaacaaatcttcttataatggtat
gttaaagaaatgaaagagagaagccaaacctattgatgtaaatacataat
gatcagatcttttatttcatcagatctgtctctgagccaatttg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagctaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgttaagtggatattagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aagaatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccatttgcatacactagcaagattttactgaa
aggacccatatgtagctgtctcttgtgagactatgcttggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcacagggctcc
ctatggaggagctagagaaagtacccaaggagctaagggatcttcaccct
atagtgacacattatgaactacagtaccctggagctcttgactgtagctg
catatgttagcaatggatggcctagttggcattactggtgagaagcatga
ccgcaaccttatttgcccagtcaaggtaacgccaggcaataagtgagtat
gttgtcttggtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84209196_84210384
seq2: B6Ng01-160D02.b_45_1188 (reverse)

seq1  CAAATTTGAGGCTCAGAGACAGATCTTGATATGGAAATTTAAAAGATCCT  50
      ||||||   |||||||||||||||| ||||   ||||  |||||||||  
seq2  CAAATT---GGCTCAGAGACAGATC-TGAT---GAAA--TAAAAGATC--  39

seq1  TTGATCTATATAATGTATTTTAACATTCAATTAGTTTTTGCTTTCTTTCT  100
       |||||   || ||||||||  ||| |||| ||| ||| || |||| |||
seq2  -TGATC---ATTATGTATTT--ACA-TCAA-TAGGTTTGGC-TTCTCTCT  80

seq1  TTCTTTTTCTATTTTCTTTTAACATACCATTTATAGAGATTTTGTTTAAT  150
      ||| |||          ||||||||||||||   |||   ||||||||| 
seq2  TTCATTT---------CTTTAACATACCATTATAAGAAGATTTGTTTAA-  120

seq1  TGGTTGTTTGCTTGCTTGCTTGCCTGCTTGGTAGGTTAGGTGTTTGGTTG  200
      |||||| |||| ||| ||||   |||||  ||||  ||||||||||  ||
seq2  TGGTTG-TTGC-TGC-TGCT--GCTGCT--GTAG--TAGGTGTTTG--TG  159

seq1  GTTGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGGTT  250
      | ||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  G-TGGGTTTGGGTTT-GGTTTGGGTTTGGGTTTGGGTTT-GGTTTGGGTT  206

seq1  TGGGTTTGGGTTTGGGTTTGGGTTTGGGTTGGTAACTTAAACACCTCT-A  299
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TGGGTTTGGG-TTGGGTTTGGGTTTGGGTTGGTAACTTAAACACCTCTAA  255

seq1  AATAGGCAGAGCATACATGATATATAACACAGTGACAGCTTGTGGTTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATAGGCAGAGCATACATGATATATAACACAGTGACAGCTTGTGG-TTGA  304

seq1  GTGATTGCACTATCCTGGCCTCTGGAAGAAAGTACACTTATCTCGTTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGCACTATCCTGGCCTCTGGAAGAAAGTACACTTATCTCGTTTAG  354

seq1  CACAAGAGGGTTTTCTTATCCGTGGCCATGGGGCAGATAAAGTGCCAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGGTTTTCTTATCCGTGGCCATGGGGCAGATAAAGTGCCAAAC  404

seq1  AGGAAGCACATGTCACTGTTCACACTTTCAATCATACACACACACAACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCACATGTCACTGTTCACACTTTCAATCATACACACACACAACTG  454

seq1  CAAATACATAAAAATATCGCAATCACGCTTTCCTCTGTGACCGTTGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACATAAAAATATCGCAATCACGCTTTCCTCTGTGACCGTTGTCCT  504

seq1  TAGCCATGGCTTTAAGTTTCAACACAGGAACAAGAGTGAGAGTGTCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGGCTTTAAGTTTCAACACAGGAACAAGAGTGAGAGTGTCCTGC  554

seq1  ACAGCCAGTTAGACTGAGGAGCAGGGGGAGGTTTAAATCCCACTGAGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGTTAGACTGAGGAGCAGGGGGAGGTTTAAATCCCACTGAGCAT  604

seq1  ATCCTGTTCGCCTAAGAACAATTTTTGAGGTAATTCTAGAATTTCACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTCGCCTAAGAACAATTTTTGAGGTAATTCTAGAATTTCACTAG  654

seq1  AAATGAGAGTTTTCCCTTATATTACACTTTTAAGATATATTTTCTTTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAGTTTTCCCTTATATTACACTTTTAAGATATATTTTCTTTGGA  704

seq1  AAATCAGAATCCACCCTGATTCTGAGGCATTGACTTATAAATGCACAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAATCCACCCTGATTCTGAGGCATTGACTTATAAATGCACAGTT  754

seq1  ATCTAACAGGGTTACTTTCCTAGTGTAATGACAGCATTAATAGCAGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACAGGGTTACTTTCCTAGTGTAATGACAGCATTAATAGCAGTTTT  804

seq1  TCCACAGGTTCTTTTTCATTATTCTTCTCAAATGATATTAGGAAACAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGTTCTTTTTCATTATTCTTCTCAAATGATATTAGGAAACAGTT  854

seq1  TTACTGTGGAATGGAACACTGCATTTTTTCTAGTACTGCATTGCTCTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGAATGGAACACTGCATTTTTTCTAGTACTGCATTGCTCTGAT  904

seq1  TTTAAAATGTAAGTCCAATTTCAACTCACGCTGGTTACATACCTTCACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTAAGTCCAATTTCAACTCACGCTGGTTACATACCTTCACTT  954

seq1  TCTCATGCGTGCTGTTATTACACAGGGTGTAGTTGGTCCATGTTCTATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCGTGCTGTTATTACACAGGGTGTAGTTGGTCCATGTTCTATTA  1004

seq1  CTATCCGGATGCCGAAACCAGTGTCCATCTTGGTCACAGATCTTTGTAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGGATGCCGAAACCAGTGTCCATCTTGGTCACAGATCTTTGTAAC  1054

seq1  CTTCTCTTTAATAATAAAAAAATAAAATAAAAAGAGTTAAATAAACTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTAATAATAAAAAAATAAAATAAAAAGAGTTAAATAAACTTAT  1104

seq1  AGTTTCTGTTCAATTTCCCCCCCTTTGGTTAAAGGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTTCAATTTCCCCCCCTTTGGTTAAAGGAATTC  1144