BAC Information

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BAC

Clone NameB6Ng01-160D20
Chromosome2 (Build37)
Map Location 140,649,533 - 140,834,004
singlet/doubletdoublet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D20.bB6Ng01-160D20.g
ACCDH953670DH953671
length1,0551,100
definitionDH953670|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D20, 5' end.DH953671|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,649,533 - 140,650,607)(140,832,877 - 140,834,004)
sequence
gaattctaacttagggttatgtttgtacatacataagtatcacattcttt
attattgcagccagtcatctgcaatgcaaccttcaaaaatggttacttct
taagtgcagctcaagtggatttttctttaattgtgctcattgaccatttc
ttctatggataccaggcattctgattcctctctgtgaccctctggtattt
ctttcctatctttaacattcttccctcatccctttccatttccttactgg
atttatgacttctggtttgatgtatgacccattttgtgtaatcagagcta
tctgtgtaatcactagatagaactctctaccataaccctggggtaactag
tgggctcacaacagaagacaatgactctccgtctacctgacagtgtcctt
aatgagtatttcagcaatgaaggatcatcttccacctctttttcagccat
gcattgctgttgggttcatttggatgcagacctcaagcacacacctacag
tagtgaggttgtggttgcaatgtttgtctcttgtccagaagatattttcc
ttttgttggctcctatactctttctgccccctttctcacaatattccctt
agccttagagtgggtgatataaatatcttgtttaagattaattccatgga
actttgttatatctatttgccttccaggagtacataggctgaatttctga
ataaatcggtgagaattcacaaatctgtttaacatttctatctcctccca
aatagagtctatatatagaaataaatctgctgctctagtaaaagtttgac
ttattcttattacagcaaaatgtcctgagattgttttgtttgatggtgtt
taatttaatttaatttatcattatattttcttgtacattgtcctttgaaa
tcactgaaattgcctagtagcattgtatatctatatcataaatggaaact
cagatcatttagatatagatagagatgaaggatttcatatgtacttatat
tgtacaaggaacataggaaaaatagcatttcagaggaaaggagctaaata
gggaa
gaattccagacacccatcttctctaagcagttagatcccttccttcaggt
attgctcccactcagctttgcgagtgaagatcacaatcctggcccctgtc
agaagcttcctggcaggattgttgttgttttctcagtatgaaaacaacaa
agaaacaatccagtagccttaattcctgagcagcctgacaggcgttcaaa
caagttgaaactcaggtcacataagcagaccccaaactggccatcacaga
aagagttataaggcgatgagaagctccggggaacctattaaatccagcat
ccctgtcagtgtgaaacaggagcagtcttgccttctcagttccactgttt
aaagagcccactaagaagacacttcatccctctgccatctgcgcagcact
gtagtaattagtatcttccatgccacagggcacctcacggagtgaaatat
taagagaagactcgaccggttgtgacacatcaatgaaacaggattagttc
catgtagccttttgcttaaagagagaaaataaaaatatttcagtgttctt
aagtttacaagtaaagcgaagtctagaaacacagatgttgttttaaaata
ttcttcagtgactcagagcttcagaaggtaaaacaggagcaaagcaggac
aattcacactaagctctgttatgcaggcatcaggcagcaagggacagaga
aaccccccaactctctgtatatttccaggctcagagtgctagaaatggga
tctgtttaggcagactacattttattctttacacataatacacctctgct
acttagtagtgaagaatttctaacatcatatcgtgctgtgaaaagggttc
ttttgaggtttgcctattgtaagttctggaaaaccacaacacagtgtgaa
tgccttttggcaagtcactgtaccatcagtagggacaaagtatataggca
ggctcccagctctaagcctcaaactggaagcaaagcaaacagagttcata
gcttgctttaacttggcctgtttaaaaggacttggatgcttttctatttt
ttgttggtgtttactgttttaaaaggtagctaggacgtctgagaatctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140649533_140650607
seq2: B6Ng01-160D20.b_46_1100

seq1  GAATTCTAACTTAGGGTTATGTTTGTACATACATAAGTATCACATTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTTAGGGTTATGTTTGTACATACATAAGTATCACATTCTTT  50

seq1  ATTATTGCAGCCAGTCATCTGCAATGCAACCTTCAAAAATGGTTACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCAGCCAGTCATCTGCAATGCAACCTTCAAAAATGGTTACTTCT  100

seq1  TAAGTGCAGCTCAAGTGGATTTTTCTTTAATTGTGCTCATTGACCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCAGCTCAAGTGGATTTTTCTTTAATTGTGCTCATTGACCATTTC  150

seq1  TTCTATGGATACCAGGCATTCTGATTCCTCTCTGTGACCCTCTGGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGATACCAGGCATTCTGATTCCTCTCTGTGACCCTCTGGTATTT  200

seq1  CTTTCCTATCTTTAACATTCTTCCCTCATCCCTTTCCATTTCCTTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATCTTTAACATTCTTCCCTCATCCCTTTCCATTTCCTTACTGG  250

seq1  ATTTATGACTTCTGGTTTGATGTATGACCCATTTTGTGTAATCAGAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGACTTCTGGTTTGATGTATGACCCATTTTGTGTAATCAGAGCTA  300

seq1  TCTGTGTAATCACTAGATAGAACTCTCTACCATAACCCTGGGGTAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAATCACTAGATAGAACTCTCTACCATAACCCTGGGGTAACTAG  350

seq1  TGGGCTCACAACAGAAGACAATGACTCTCCGTCTACCTGACAGTGTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCACAACAGAAGACAATGACTCTCCGTCTACCTGACAGTGTCCTT  400

seq1  AATGAGTATTTCAGCAATGAAGGATCATCTTCCACCTCTTTTTCAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTATTTCAGCAATGAAGGATCATCTTCCACCTCTTTTTCAGCCAT  450

seq1  GCATTGCTGTTGGGTTCATTTGGATGCAGACCTCAAGCACACACCTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTGTTGGGTTCATTTGGATGCAGACCTCAAGCACACACCTACAG  500

seq1  TAGTGAGGTTGTGGTTGCAATGTTTGTCTCTTGTCCAGAAGATATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGTTGTGGTTGCAATGTTTGTCTCTTGTCCAGAAGATATTTTCC  550

seq1  TTTTGTTGGCTCCTATACTCTTTCTGCCCCCTTTCTCACAATATTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGCTCCTATACTCTTTCTGCCCCCTTTCTCACAATATTCCCTT  600

seq1  AGCCTTAGAGTGGGTGATATAAATATCTTGTTTAAGATTAATTCCATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGAGTGGGTGATATAAATATCTTGTTTAAGATTAATTCCATGGA  650

seq1  ACTTTGTTATATCTATTTGCCTTCCAGGAGTACATAGGCTGAATTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTATATCTATTTGCCTTCCAGGAGTACATAGGCTGAATTTCTGA  700

seq1  ATAAATCGGTGAGAATTCACAAATCTGTTTAACATTTCTATCTCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCGGTGAGAATTCACAAATCTGTTTAACATTTCTATCTCCTCCCA  750

seq1  AATAGAGTCTATATATAGAAATAAATCTGCTGCTCTAGTAAAAGTTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTCTATATATAGAAATAAATCTGCTGCTCTAGTAAAAGTTTGAC  800

seq1  TTATTCTTATTACAGCAAAATGTCCTGAGATTGTTTTGTTTGATGGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTATTACAGCAAAATGTCCTGAGATTGTTTTGTTTGATGGTGTT  850

seq1  TAATTTAATTTAATTTATCATTATATTTTCTTGTTACATTGTCCTTTGAA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATTTAATTTAATTTATCATTATATTTTCTTG-TACATTGTCCTTTGAA  899

seq1  ATCACTGAAATTGCCTAAGTAGCATTGTTATATCTATAATTCATAAAATG  950
      |||||||||||||||| |||||||||| ||||||||||  |||| |||||
seq2  ATCACTGAAATTGCCT-AGTAGCATTG-TATATCTATA--TCAT-AAATG  944

seq1  GAAAACTCAGATCAATTTAGATATAGATAGAGAATGAAAGGATTTCAATA  1000
      | ||||||||||| |||||||||||||||||| ||| ||||||||| |||
seq2  G-AAACTCAGATC-ATTTAGATATAGATAGAG-ATG-AAGGATTTC-ATA  989

seq1  TGTACTTAATATTGTTACAAGGAAACATAAGAAAAAATAGCCATTTCAAG  1050
      ||||||| |||||| ||||||| ||||| || |||||||| |||||| ||
seq2  TGTACTT-ATATTG-TACAAGG-AACAT-AGGAAAAATAG-CATTTC-AG  1033

seq1  AGGAAAAAGGAGCTAAAATAGGGAA  1075
      |||  ||||||||| ||||||||||
seq2  AGG--AAAGGAGCT-AAATAGGGAA  1055

seq1: chr2_140832877_140834004
seq2: B6Ng01-160D20.g_69_1168 (reverse)

seq1  TCAGATTCTCCAGAACGTCCTAGCTAAACATTATTTTAAAAAACAGGTAA  50
      ||||||||| ||| ||||||||||||       |||||||| |   ||||
seq2  TCAGATTCT-CAG-ACGTCCTAGCTA-----CCTTTTAAAACA---GTAA  40

seq1  ACACACAAACAAAAAAATTAAGAAAAGCCAACCCAGAGTCCTTTTATACA  100
        |||| |||||||||    ||||||||  | ||| |||||||||| |||
seq2  --ACACCAACAAAAAA---TAGAAAAGC--ATCCA-AGTCCTTTTAAACA  82

seq1  GGGCAAAAGTTAAAGCAAGCTATGAACTCTGTTTGCCTTTGCTTTCCAGT  150
      || |  ||||||||||||||||||||||||||||| |||||| |||||||
seq2  GGCC--AAGTTAAAGCAAGCTATGAACTCTGTTTG-CTTTGC-TTCCAGT  128

seq1  TTGAGGCCTTAAGAGCTGGGAGCCTGCCTAATATACTTTGTCCCTACTGA  200
      |||||||  | |||||||||||||||||| ||||||||||||||||||||
seq2  TTGAGGC--TTAGAGCTGGGAGCCTGCCT-ATATACTTTGTCCCTACTGA  175

seq1  TGGTACAGTGACTTGCCAAAAGGCATTCACACTGTGTTGTGGTTTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGTGACTTGCCAAAAGGCATTCACACTGTGTTGTGGTTTTCCAG  225

seq1  AACTTACAATAGGCAAAACCTCAAAAGAACCCTTTTCACAGCACGTTATG  300
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  AACTTACAATAGGC-AAACCTCAAAAGAACCCTTTTCACAGCACGATATG  274

seq1  ATGTTTAGAAATTCTTCACTACTAAGTAGCAGAGGTGTATTATTGTGTAA  350
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATG-TTAGAAATTCTTCACTACTAAGTAGCAGAGGTGTATTA-TGTGTAA  322

seq1  AGAATAAAATGTAGTCTGCCTAAACAGATCCAATTTCTAGCACTCTGAGC  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAATAAAATGTAGTCTGCCTAAACAGATCCCATTTCTAGCACTCTGAGC  372

seq1  CTGGAAGTATACAGAGAGTTGGGGGGTTTCTCTGTCCCTTGCTGCCTGAT  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATATACAGAGAGTTGGGGGGTTTCTCTGTCCCTTGCTGCCTGAT  422

seq1  GCCTGCATAACAGAGCTTAGTGTGAATTGTCCTGCTTTGCTCCTGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATAACAGAGCTTAGTGTGAATTGTCCTGCTTTGCTCCTGTTTTA  472

seq1  CCTTCTGAAGCTCTGAGTCACTGAAGAATATTTTAAAACAACATCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAAGCTCTGAGTCACTGAAGAATATTTTAAAACAACATCTGTGT  522

seq1  TTCTAGACTTCGCTTTACTTGTAAACTTAAGAACACTGAAATATTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTTCGCTTTACTTGTAAACTTAAGAACACTGAAATATTTTTAT  572

seq1  TTTCTCTCTTTAAGCAAAAGGCTACATGGAACTAATCCTGTTTCATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTTAAGCAAAAGGCTACATGGAACTAATCCTGTTTCATTGAT  622

seq1  GTGTCACAACCGGTCGAGTCTTCTCTTAATATTTCACTCCGTGAGGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAACCGGTCGAGTCTTCTCTTAATATTTCACTCCGTGAGGTGCC  672

seq1  CTGTGGCATGGAAGATACTAATTACTACAGTGCTGCGCAGATGGCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATGGAAGATACTAATTACTACAGTGCTGCGCAGATGGCAGAGG  722

seq1  GATGAAGTGTCTTCTTAGTGGGCTCTTTAAACAGTGGAACTGAGAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTGTCTTCTTAGTGGGCTCTTTAAACAGTGGAACTGAGAAGGCA  772

seq1  AGACTGCTCCTGTTTCACACTGACAGGGATGCTGGATTTAATAGGTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTCCTGTTTCACACTGACAGGGATGCTGGATTTAATAGGTTCCC  822

seq1  CGGAGCTTCTCATCGCCTTATAACTCTTTCTGTGATGGCCAGTTTGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTTCTCATCGCCTTATAACTCTTTCTGTGATGGCCAGTTTGGGGT  872

seq1  CTGCTTATGTGACCTGAGTTTCAACTTGTTTGAACGCCTGTCAGGCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATGTGACCTGAGTTTCAACTTGTTTGAACGCCTGTCAGGCTGCT  922

seq1  CAGGAATTAAGGCTACTGGATTGTTTCTTTGTTGTTTTCATACTGAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTAAGGCTACTGGATTGTTTCTTTGTTGTTTTCATACTGAGAAA  972

seq1  ACAACAACAATCCTGCCAGGAAGCTTCTGACAGGGGCCAGGATTGTGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAATCCTGCCAGGAAGCTTCTGACAGGGGCCAGGATTGTGATC  1022

seq1  TTCACTCGCAAAGCTGAGTGGGAGCAATACCTGAAGGAAGGGATCTAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCGCAAAGCTGAGTGGGAGCAATACCTGAAGGAAGGGATCTAACT  1072

seq1  GCTTAGAGAAGATGGGTGTCTGGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  GCTTAGAGAAGATGGGTGTCTGGAATTC  1100