BAC Information

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BAC

Clone NameB6Ng01-160G10
Chromosome2 (Build37)
Map Location 100,643,120 - 100,644,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G10.bB6Ng01-160G10.g
ACCDH953783DH953784
length1,2441,042
definitionDH953783|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G10, 5' end.DH953784|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttattcagttctgagccccattttttaatggggttatatgatt
ttcaggagtccaccttcttgagttctttatatatgttgatattagtaccc
tatctgattttggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgagggtgtcttttgccttgcagaagctttagagtttcat
gaggtcccatttgtcaattctctatcttacagcacaagccattgctgttc
tattcaggaattttgcccctgtgcccatatcttcaagactttttcccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccctagtacaaggagatagttatggatcaatttgca
ttcttctacacgataacagccagttgtgccagcaccatttgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcagtataccagtaccatgcagtttttataacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagttttttgctatcctaggttttttattaatccagatg
aatttgcagattgctctttctaattcgttggagaattgaattggaatttt
gatggggattgcattgaatctgtagattgctttttggcaagatagccatt
tttacatgttgatcctgccaatccatgagcttgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
ccagatcttttcacttccttagagtcacgccaatatattttataattatt
tgtgactattgagaaggctgttgtttccctaatctctttcttcagcctgt
ttattctttgtgtagagaaaggcatggacttgtttgagttatttttattc
cagctacttcaccgaagctgttaatcaggttgaggagtttcctggtgaat
ttgttagggtcacgtttatttatacttcatatactcgcgactaagggaaa
ttggacttccctcctttcccaattttgtaccttaccctgttggccaatgg
ctctggctaacttcaagatatcatagttgataagacggaatgta
gaattccacaggaatagaattgtttatatagagtgtgcttatataaagca
acacacacacacacacacacacacacacacacacacacacacacacacaa
attaaaacttaaaaagaaatgacatcatataagaatgatataaattttag
atgccaatttggttttaatcagagataatcatgcttaataaattatttaa
tttagttatatttgaagttataagaggattctaaaaactattcaactcaa
gtaaataaatcagtagcccaatttcatctctatgaaagaagcattgaaac
tatgacacagtgcaacagggctcaagtctggtcctgtgatcaggatgata
aaaggagaacacatggctcctgtacatccacatcgtccaggtgcttattc
tccggagtgccctgaccttgaaaattatccatctacattcacaaaatttt
cctgtattattacagagttctatgatactaatcctgggtttagtcactgt
ttcatttcagaagaataatccgtacatagaaaatttcaccttcataatta
caatgacaagctcacttttgatgctattaaccttaacttctttgatattt
ctgggaacttttctcagacccttcaactttgaaaaacagtaatcacaatt
tcaactttatgtggacttaattttcaccaatatttgcaagttgcctcagt
tactcttctcttctacagctaacagtgtttgatactgggctgaatttaat
ccatacaagttcatgtcatatagttatcttatttcaaacattacaacccc
cattcaaaatagaaaaaaaggcatatgtattgagtagaagtgtgaatcca
cttgcaagtcctgaattatcctaccaaataggctcttcactgcctaccct
ggagttattcctttacccgtgtgactacctatactttttttgagctttta
aattcttttttaaattttattaatatttataggttatttttattaacatt
caatactatcacaaagtcccagaccctcccaaactccttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100643120_100644178
seq2: B6Ng01-160G10.g_64_1100

seq1  GAATTCCACAGGAATAGAATTGTTTATATAGAGTGTGCTTATATAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAATAGAATTGTTTATATAGAGTGTGCTTATATAAAGCA  50

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAA  100

seq1  ATTAAAACTTAAAAAGAAATGACATCATATAAGAATGATATAAATTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTTAAAAAGAAATGACATCATATAAGAATGATATAAATTTTAG  150

seq1  ATGCCAATTTGGTTTTAATCAGAGATAATCATGCTTAATAAATTATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATTTGGTTTTAATCAGAGATAATCATGCTTAATAAATTATTTAA  200

seq1  TTTAGTTATATTTGAAGTTATAAGAGGATTCTAAAAACTATTCAACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATATTTGAAGTTATAAGAGGATTCTAAAAACTATTCAACTCAA  250

seq1  GTAAATAAATCAGTAGCCCAATTTCATCTCTATGAAAGAAGCATTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATCAGTAGCCCAATTTCATCTCTATGAAAGAAGCATTGAAAC  300

seq1  TATGACACAGTGCAACAGGGCTCAAGTCTGGTCCTGTGATCAGGATGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAGTGCAACAGGGCTCAAGTCTGGTCCTGTGATCAGGATGATA  350

seq1  AAAGGAGAACACATGGCTCCTGTACATCCACATCGTCCAGGTGCTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAACACATGGCTCCTGTACATCCACATCGTCCAGGTGCTTATTC  400

seq1  TCCGGAGTGCCCTGACCTTGAAAATTATCCATCTACATTCACAAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGTGCCCTGACCTTGAAAATTATCCATCTACATTCACAAAATTTT  450

seq1  CCTGTATTATTACAGAGTTCTATGATACTAATCCTGGGTTTAGTCACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTATTACAGAGTTCTATGATACTAATCCTGGGTTTAGTCACTGT  500

seq1  TTCATTTCAGAAGAATAATCCGTACATAGAAAATTTCACCTTCATAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAGAAGAATAATCCGTACATAGAAAATTTCACCTTCATAATTA  550

seq1  CAATGACAAGCTCACTTTTGATGCTATTAACCTTAACTTCTTTGATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAAGCTCACTTTTGATGCTATTAACCTTAACTTCTTTGATATTT  600

seq1  CTGGGAACTTTTCTCAGACCCTTCAACTTTGAAAAACAGTAATCACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTTTTCTCAGACCCTTCAACTTTGAAAAACAGTAATCACAATT  650

seq1  TCAACTTTATGTGGACTTAATTTTCACCAATATTTGCAAGTTGCCTCAGG  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAACTTTATGTGGACTTAATTTTCACCAATATTTGCAAGTTGCCTCA-G  699

seq1  TTACTCTTCTCTTCTACAGCTAACAGTGTTTGATACTGGGCTGAATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTCTCTTCTACAGCTAACAGTGTTTGATACTGGGCTGAATTTAA  749

seq1  TCCATACAAGTTCATGTCATATAGTTATCTTATTTCAAACATTACAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACAAGTTCATGTCATATAGTTATCTTATTTCAAACATTACAACCC  799

seq1  CCATTCAAAAATAGAAAAAAAAGGCATATGTATTGAGTAGAAGTGTGAAA  850
      |||||| ||||||| |||||||||||||||||||||||||||||||| ||
seq2  CCATTC-AAAATAG-AAAAAAAGGCATATGTATTGAGTAGAAGTGTG-AA  846

seq1  TCCAC-TGCAAGTCCTGAATTATCCTACCAAATAGGCTCTTTCACTGCCT  899
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCACTTGCAAGTCCTGAATTATCCTACCAAATAGGCTC-TTCACTGCCT  895

seq1  ACCCTGGAGTTATTCCTTATCCCAGTGTGACTTACCTATACTTTTTTTTG  949
      |||||||||||||||||| | || ||||||| ||||||||| ||||||||
seq2  ACCCTGGAGTTATTCCTT-TACCCGTGTGAC-TACCTATAC-TTTTTTTG  942

seq1  AGCTTTTAAAATTCCTTTTTTAAAATTTTTTAATTAATATTTTAATTAGG  999
      ||||||||||  | ||||||||||    ||| ||||||||||    ||||
seq2  AGCTTTTAAA--TTCTTTTTTAAA----TTTTATTAATATTT---ATAGG  983

seq1  TATTTTTTATTAACATTTCAAATACTATCACAAAAGTCCCCCAGACCCTC  1049
      |  ||||||||||||||   ||||||||||| |||||  |||||||||| 
seq2  TTATTTTTATTAACATT--CAATACTATCAC-AAAGT--CCCAGACCCT-  1027

seq1  CCCCAACTCC  1059
      ||| ||||||
seq2  CCCAAACTCC  1037