BAC Information

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BAC

Clone NameB6Ng01-160J06
Chromosome2 (Build37)
Map Location 151,028,561 - 151,208,680
singlet/doubletdoublet
Overlap geneLOC100043839
Upstream geneEG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
Downstream geneLOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J06.bB6Ng01-160J06.g
ACCDH953915DH953916
length1,0771,178
definitionDH953915|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J06, 5' end.DH953916|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,207,603 - 151,208,680)(151,028,561 - 151,029,734)
sequence
gaattctatagacagccaaaggtggtgttaccataaatgtcagaggtgca
actttttcaaatgcatgtgagtaaaaatacccatggaggacagaggtgaa
atacatggagctgaaattagagctgctgtgagtcacactgtgtgtgggga
gttaaacttataagtaaaggccaggaaatcaaggtggggtggggagttcc
attagagggattggaactacaggagatattcagaggtgggagatttactc
tggacaaactccaaggaagattggcacacaaaatcaaggagaggtaattt
gcctcttggcagacatagtatagtttaagtgagttaaatatgttacaagg
tagtcagaaaacaagcctaagttgtggcctgggccttttacattaataat
aagcctccaagtaattattcaggaactggtgtgtaggtgggaaagctcat
ggttttgtgtacttttaagacttttgtccccttacctcaacaaatcacta
gcatccatgctcagggggttggtggcaatgtagctactgtcttagagaaa
aatccaaccctgtcttccttcctaagtggagtccttcaaagttggactac
atgctgacagcagaagacagtgtcctgaggctgggcaagggtgctagaaa
agggtgtgtgaatggagcaatggattactctggaagaatcagcctgaagg
cctgtgccagcacagtgccagcacagaccagcatgggtcctgtagatttc
tcctaacagggcccttccttttgtgtttttccagtgctctttcgggcact
gttgtccctggaggatgatatcagagagtggagaagcaatgtgctgaaga
tacagaccagagcagaagagcacagagccaggtaggaattccaggtgact
ttgccattgggaggctctgtttaaatcacaggttgaaagtagaggaaagt
tgctgatgctttattctgccctagaatattaaaattcactaaatgcggaa
ctggagtcgcaactctctttgggtccgggatgaccccggggccactggaa
cagtaaattccctcttgccttttgcat
gaattctgctttccatgaactaggtacccttcgtcccctgaaaaagggct
gactgggcataattcatattttaggtatttatctgcacttcagtacttac
ttagctatactgtactacattgccaatagttcattttctgtcacatataa
aacatttcctctttcctagaaactaaacagctgtgcaactgacacatcag
gaattctgaaggaccttgggatacacagctcttcttaatgggggcatgaa
cttcattacaagtcaccaaggttcttcaggaagccaacatgacaaactta
ccttctccacagggaaagctgagattcactgtgtgctcattgccacctcc
agcctttctgtctgaagggatgacagtttttcctgcaattgggtctagga
caaatgggccttgcaggctttcattcccttttgctgcctggggcccaaag
gcctccgggtcaagcagctggcgtgcattaagtttgagtgcaaaggcttc
tgggtgaagcagttgccaagctttgctattgctcttgcacaaaggtttct
gggtgaagcagttcttgggtggtgctgctgcttggttagggaggactcct
gttgatcccgagggtgtgagctctgagacgctgttatttcagtagaaaaa
ggcgttaaatgaagtaaatgtctaaaatcttttaactatctaaaatgtag
atactttaactagaatgtctaaaatctacccaatactgcaggagactgtt
actgtatgttttttgctttcatgaacttcctgtgtgcacatcttgttttt
ttaaaaagtatttgacagtgccacacagtctcatttacttacttgctttg
taaagtagctaacagctttgcctgcctgttatatttttgtatatgtctgg
ggctctttgtgttcacactcgctccttctactgcatttcagataattttc
tttgggatttaaatcaagtaggcattcatgtctactgataattttgttga
agttgctgtcctttaggcaacagaatgtccacttacccttctattaaatc
cactcaccaagtttctagtcctcacctgttatgcgaaagaatcgtgctgc
tagtgaaactccctttcagctccgcaaaggtgatctacctcagctttact
tataggccttggcttcgttgagtcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151207603_151208680
seq2: B6Ng01-160J06.b_45_1121 (reverse)

seq1  ATGCAAAAAGCAAGA-GGAATTTACTGTTCCAGT-GCACCGGGGTCATCC  48
      |||||||| |||||| |||||||||||||||||| || ||||||||||||
seq2  ATGCAAAAGGCAAGAGGGAATTTACTGTTCCAGTGGCCCCGGGGTCATCC  50

seq1  CGGACCCAAAGGAGAGTTGCCGACCTCCAG-TGCGCATTTAGTGAATTTT  97
      |||||||||| |||||||| ||| |||||| | |||||||||||||||||
seq2  CGGACCCAAA-GAGAGTTG-CGA-CTCCAGTTCCGCATTTAGTGAATTTT  97

seq1  TATATTCTAGGGGCAGAATAAAGCATCAGCAACTTTTCCTCTACTTTCAA  147
       |||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  AATATTCTA-GGGCAGAATAAAGCATCAGCAAC-TTTCCTCTACTTTCAA  145

seq1  CCTGTGATTTAAACAGAGCCTCCCAATGGCAAAGTCACCTGGAATTCCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTTAAACAGAGCCTCCCAATGGCAAAGTCACCTGGAATTCCTA  195

seq1  CCTGGCTCTGTGCTCTTCTGCTCTGGTCTGTATCTTCAGCACATTGC-TC  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTGGCTCTGTGCTCTTCTGCTCTGGTCTGTATCTTCAGCACATTGCTTC  245

seq1  TCCACTCTCTGATATCATCCTCCAGGGACAACAGTGCCCGAAAGAGCACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTCTGATATCATCCTCCAGGGACAACAGTGCCCGAAAGAGCACT  295

seq1  GGAAAAACACAAAAGGAAGGGCCCTGTTAGGAGAAATCTACAGGACCCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACACAAAAGGAAGGGCCCTGTTAGGAGAAATCTACAGGACCCAT  345

seq1  GCTGGTCTGTGCTGGCACTGTGCTGGCACAGGCCTTCAGGCTGATTCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTGTGCTGGCACTGTGCTGGCACAGGCCTTCAGGCTGATTCTTC  395

seq1  CAGAGTAATCCATTGCTCCATTCACACACCCTTTTCTAGCACCCTTGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAATCCATTGCTCCATTCACACACCCTTTTCTAGCACCCTTGCCC  445

seq1  AGCCTCAGGACACTGTCTTCTGCTGTCAGCATGTAGTCCAACTTTGAAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGGACACTGTCTTCTGCTGTCAGCATGTAGTCCAACTTTGAAGG  495

seq1  ACTCCACTTAGGAAGGAAGACAGGGTTGGATTTTTCTCTAAGACAGTAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTTAGGAAGGAAGACAGGGTTGGATTTTTCTCTAAGACAGTAGC  545

seq1  TACATTGCCACCAACCCCCTGAGCATGGATGCTAGTGATTTGTTGAGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCCACCAACCCCCTGAGCATGGATGCTAGTGATTTGTTGAGGTA  595

seq1  AGGGGACAAAAGTCTTAAAAGTACACAAAACCATGAGCTTTCCCACCTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAAAAGTCTTAAAAGTACACAAAACCATGAGCTTTCCCACCTAC  645

seq1  ACACCAGTTCCTGAATAATTACTTGGAGGCTTATTATTAATGTAAAAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTTCCTGAATAATTACTTGGAGGCTTATTATTAATGTAAAAGGC  695

seq1  CCAGGCCACAACTTAGGCTTGTTTTCTGACTACCTTGTAACATATTTAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACAACTTAGGCTTGTTTTCTGACTACCTTGTAACATATTTAAC  745

seq1  TCACTTAAACTATACTATGTCTGCCAAGAGGCAAATTACCTCTCCTTGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAACTATACTATGTCTGCCAAGAGGCAAATTACCTCTCCTTGAT  795

seq1  TTTGTGTGCCAATCTTCCTTGGAGTTTGTCCAGAGTAAATCTCCCACCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGCCAATCTTCCTTGGAGTTTGTCCAGAGTAAATCTCCCACCTC  845

seq1  TGAATATCTCCTGTAGTTCCAATCCCTCTAATGGAACTCCCCACCCCACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCTCCTGTAGTTCCAATCCCTCTAATGGAACTCCCCACCCCACC  895

seq1  TTGATTTCCTGGCCTTTACTTATAAGTTTAACTCCCCACACACAGTGTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCCTGGCCTTTACTTATAAGTTTAACTCCCCACACACAGTGTGA  945

seq1  CTCACAGCAGCTCTAATTTCAGCTCCATGTATTTCACCTCTGTCCTCCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCAGCTCTAATTTCAGCTCCATGTATTTCACCTCTGTCCTCCAT  995

seq1  GGGTATTTTTACTCACATGCATTTGAAAAAGTTGCACCTCTGACATTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTTACTCACATGCATTTGAAAAAGTTGCACCTCTGACATTTAT  1045

seq1  GGTAACACCACCTTTGGCTGTCTATAGAATTC  1078
      ||||||||||||||||||||||||||||||||
seq2  GGTAACACCACCTTTGGCTGTCTATAGAATTC  1077

seq1: chr2_151028561_151029734
seq2: B6Ng01-160J06.g_68_1245

seq1  GAATTCTGCTTTCCATGAACTAGGTACCCTTCGTCCCCTGAAAAAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTCCATGAACTAGGTACCCTTCGTCCCCTGAAAAAGGGCT  50

seq1  GACTGGGCATAATTCATATTTTAGGTATTTATCTGCACTTCAGTACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCATAATTCATATTTTAGGTATTTATCTGCACTTCAGTACTTAC  100

seq1  TTAGCTATACTGTACTACATTGCCAATAGTTCATTTTCTGTCACATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATACTGTACTACATTGCCAATAGTTCATTTTCTGTCACATATAA  150

seq1  AACATTTCCTCTTTCCTAGAAACTAAACAGCTGTGCAACTGACACATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTCTTTCCTAGAAACTAAACAGCTGTGCAACTGACACATCAG  200

seq1  GAATTCTGAAGGACCTTGGGATACACAGCTCTTCTTAATGGGGGCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGACCTTGGGATACACAGCTCTTCTTAATGGGGGCATGAA  250

seq1  CTTCATTACAAGTCACCAAGGTTCTTCAGGAAGCCAACATGACAAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTACAAGTCACCAAGGTTCTTCAGGAAGCCAACATGACAAACTTA  300

seq1  CCTTCTCCACAGGGAAAGCTGAGATTCACTGTGTGCTCATTGCCACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCACAGGGAAAGCTGAGATTCACTGTGTGCTCATTGCCACCTCC  350

seq1  AGCCTTTCTGTCTGAAGGGATGACAGTTTTTCCTGCAATTGGGTCTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTGTCTGAAGGGATGACAGTTTTTCCTGCAATTGGGTCTAGGA  400

seq1  CAAATGGGCCTTGCAGGCTTTCATTCCCTTTTGCTGCCTGGGGCCCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGCCTTGCAGGCTTTCATTCCCTTTTGCTGCCTGGGGCCCAAAG  450

seq1  GCCTCCGGGTCAAGCAGCTGGCGTGCATTAAGTTTGAGTGCAAAGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGGGTCAAGCAGCTGGCGTGCATTAAGTTTGAGTGCAAAGGCTTC  500

seq1  TGGGTGAAGCAGTTGCCAAGCTTTGCTATTGCTCTTGCACAAAGGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAGCAGTTGCCAAGCTTTGCTATTGCTCTTGCACAAAGGTTTCT  550

seq1  GGGTGAAGCAGTTCTTGGGTGGTGCTGCTGCTTGGTTAGGGAGGACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGCAGTTCTTGGGTGGTGCTGCTGCTTGGTTAGGGAGGACTCCT  600

seq1  GTTGATCCCGAGGGTGTGAGCTCTGAGACGCTGTTATTTCAGTAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCCGAGGGTGTGAGCTCTGAGACGCTGTTATTTCAGTAGAAAAA  650

seq1  GGCGTTAAATGAAGTAAATGTCTAAAATC-TTTAACTATCTAAAATGTAG  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCGTTAAATGAAGTAAATGTCTAAAATCTTTTAACTATCTAAAATGTAG  700

seq1  ATAC-TTAACTAGAATGTCTAAAATCTACCCAATACTGCAGGAGACTGTT  748
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAACTAGAATGTCTAAAATCTACCCAATACTGCAGGAGACTGTT  750

seq1  ACTGTATGTTTTTTGCTTTCATGAACTTCCTGTGTGCACATCTTGTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTTTTTTGCTTTCATGAACTTCCTGTGTGCACATCTTGTTTTT  800

seq1  TTAAAAAGTATTTGACAGTGCCACACAGTCTCATTTACTTACTTGCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATTTGACAGTGCCACACAGTCTCATTTACTTACTTGCTTTG  850

seq1  TAAAGTAGCTAACAGCTTTGCCTGCCTGTTATATTTTTGTATATGTCT-G  897
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGTAGCTAACAGCTTTGCCTGCCTGTTATATTTTTGTATATGTCTGG  900

seq1  GGCTCTTTGTGTTCACACTCGCTCCTTCTACTGCATTTCAGATAATTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGTGTTCACACTCGCTCCTTCTACTGCATTTCAGATAATTTTC  950

seq1  TTTGGGATTTAAATCAAGTAGGCATTCATGTCTACTGATAATTTTGTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATTTAAATCAAGTAGGCATTCATGTCTACTGATAATTTTGTTGA  1000

seq1  AGTTGCTGTCCTTTAGGCCACAGATGGTCCACTTACCC-TCTATTAAATC  1046
      |||||||||||||||||| |||||  |||||||||||| |||||||||||
seq2  AGTTGCTGTCCTTTAGGCAACAGAATGTCCACTTACCCTTCTATTAAATC  1050

seq1  CACTCACC-AGTTCCTAGCCCTCACCTTGTATGCG-AAGGATCGTGCCTG  1094
      |||||||| |||| |||| ||||||||  |||||| ||| |||||| |||
seq2  CACTCACCAAGTTTCTAGTCCTCACCTGTTATGCGAAAGAATCGTG-CTG  1099

seq1  CTTTGTGACACTCCC-TTCAGCTTCCGCA---GTGTGTCTACCCTCAGCT  1140
      | | |||| |||||| |||||| ||||||   |||  |||| ||||||||
seq2  C-TAGTGAAACTCCCTTTCAGC-TCCGCAAAGGTG-ATCTA-CCTCAGCT  1145

seq1  TTAGCTTAT-GGCTTTGGCTTTCTGTGTGTCCTGC  1174
      ||| ||||| ||| ||||| |||  || |||||||
seq2  TTA-CTTATAGGCCTTGGC-TTCGTTGAGTCCTGC  1178