BAC Information

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BAC

Clone NameB6Ng01-160J15
Chromosome2 (Build37)
Map Location 155,704,879 - 155,800,535
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250
Upstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneErgic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J15.bB6Ng01-160J15.g
ACCDH953933DH953934
length1,1061,136
definitionDH953933|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J15, 5' end.DH953934|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,704,879 - 155,705,997)(155,799,396 - 155,800,535)
sequence
gaattcagcttaggaggctcaactaacggtggtgacgacagagggagaca
ggaaggatgtttcatagggctgtttgtcctgtgactcctgacagggagac
ttatttggaagaagccttggcagcccctgaaaggtgagccggaaaatgac
tctggctggctatatccgtcactcccacgtccctgcactcacctttcacg
gtgtgatgactgtgaacaggggacatcaaatgtaatcaggcaaagaaaaa
caaagacttgagggggaagtctggtcccttgaaaggagagctgagctagg
agcattcggtgtatggggcactaaaggagggttgtttgtggagtatgagc
ttatagacggcacacgtgcacgcacacacacacacacacacacacacaca
cacacacacacacacacacatacaaggtgtacacgcacgtgcatgtttgt
ggatgcatgcacctgtctaccatggccatcacgttgaagtaaggacaagt
gtgggaaatgcctccctccatccaccgtgtggggcctggggttagaactc
agatcgtctggctgggcagcaagcacccttacctgctgagccatctatct
tcttgctggccccgagcaagactttgaaaagtggaacaaggtcactgctc
ctttacagaaacactatggagtgggacatccaactaaataagtgtgattt
taaaaacaacgaaaagatccaattctttttttttttttttttttacccac
ttggaaaaggaatatttacagaatgcctatcatgttcggagcttttgttt
ctgatgcgtcaggaaccccacagtttgtaactcaaggcaggaatggcact
ccagataaatgaccaagtgtactgggaattccgtgctgcactcattttca
acatggaaagcgttatcaatcttttttgaaggccttctgttaaaggaagt
ggctccgggagagcttggtggtgcagcttccccagagctgagcaggagat
caaagatcgagtctaactgaattacagaagttcaggccacctggcactta
gttagactattctaaaacaaaagcaaaggaatggctaggtcctgaattca
atgaca
gaattccaggccatctagggctagagttagattttctctcaaatgaccaa
actaactaagtaaataatttggctgactgtgaaggatatacagacaagta
attacagcaggaagacgatacacgttcgcactgagtatgaagtgagggag
agactgcaggaagcacatggggactggcatgtgggggtgagcgcaggact
ccatagaaacgcattaaaacagtgggaagacccgcctcactcacatcact
tctcagtctttctgcttacaacaagtatgtaacacactgcaagtgacacc
cgcaatggcctctcacctcacttaatttatctttaagctcttccttttct
tctcgggtgcccctcagctctgcctgtagctcagcccccgcttcctctgc
cttctgcagctgagtctccagctgagttttcttctcccacagggcttccc
tgcgcctttctgcctccgccaggtccacctgcaaagcgcttctcagctgc
tctgcggcctccactctgctgcatagagactggttctcctgctccaacta
ctggccggaaagagaagagaaagagtgcagggcatcaaaggtaaaggtta
aagctccctctgcttctacagaaaccacctacagtgaacacagggaggga
gatccatccattctttccatctgatgtctacactctaggcactaggtggc
cctgatgctgggacagagacaaaaaaggcaaaatctcgctttcagagaat
tcagaataataccaggtggtggtacatgccctttgggaggtgaagggagg
atcaggagacagttttggcagcatgaaccctgtctcaaataaaacaaaac
aaaacacaaaaacctcaccaaccaactaaaatacccagaattaggaaata
cagacattttttgggtctccggggagatctagaagaaacagttttcccta
ccaaatgaggttaaattttctaccaacagagatgatttgggggctatttg
ggcctattcagcacattctgcctcacccataggcatggaatgcttcgtcc
cctccaggacatggacctttcctgtctggatcattcattcaatgctcgga
gttcttgcttcaagtgtgggggggccggtaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155704879_155705997
seq2: B6Ng01-160J15.b_46_1151

seq1  GAATTCAGCTTAGGAGGCTCAACTAACGGTGGTGACGACAGAGGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAGGAGGCTCAACTAACGGTGGTGACGACAGAGGGAGACA  50

seq1  GGAAGGATGTTTCATAGGGCTGTTTGTCCTGTGACTCCTGACAGGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATGTTTCATAGGGCTGTTTGTCCTGTGACTCCTGACAGGGAGAC  100

seq1  TTATTTGGAAGAAGCCTTGGCAGCCCCTGAAAGGTGAGCCGGAAAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGAAGAAGCCTTGGCAGCCCCTGAAAGGTGAGCCGGAAAATGAC  150

seq1  TCTGGCTGGCTATATCCGTCACTCCCACGTCCCTGCACTCACCTTTCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGCTATATCCGTCACTCCCACGTCCCTGCACTCACCTTTCACG  200

seq1  GTGTGATGACTGTGAACAGGGGACATCAAATGTAATCAGGCAAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGACTGTGAACAGGGGACATCAAATGTAATCAGGCAAAGAAAAA  250

seq1  CAAAGACTTGAGGGGGAAGTCTGGTCCCTTGAAAGGAGAGCTGAGCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTGAGGGGGAAGTCTGGTCCCTTGAAAGGAGAGCTGAGCTAGG  300

seq1  AGCATTCGGTGTATGGGGCACTAAAGGAGGGTTGTTTGTGGAGTATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGGTGTATGGGGCACTAAAGGAGGGTTGTTTGTGGAGTATGAGC  350

seq1  TTATAGACGGCACACGTGCACGCACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACGGCACACGTGCACGCACACACACACACACACACACACACACA  400

seq1  CACACACACACACACACACATACAAGGTGTACACGCACGTGCATGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACAAGGTGTACACGCACGTGCATGTTTGT  450

seq1  GGATGCATGCACCTGTCTACCATGGCCATCACGTTGAAGTAAGGACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATGCACCTGTCTACCATGGCCATCACGTTGAAGTAAGGACAAGT  500

seq1  GTGGGAAATGCCTCCCTCCATCCACCGTGTGGGGCCTGGGGTTAGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAATGCCTCCCTCCATCCACCGTGTGGGGCCTGGGGTTAGAACTC  550

seq1  AGATCGTCTGGCTGGGCAGCAAGCACCCTTACCTGCTGAGCCATCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTCTGGCTGGGCAGCAAGCACCCTTACCTGCTGAGCCATCTATCT  600

seq1  TCTTGCTGGCCCCGAGCAAGACTTTGAAAAGTGGAACAAGGTCACTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGCCCCGAGCAAGACTTTGAAAAGTGGAACAAGGTCACTGCTC  650

seq1  CTTTACAGAAACACTATGGAGTGGGACATCCAACTAAATAAGTGTGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGAAACACTATGGAGTGGGACATCCAACTAAATAAGTGTGATTT  700

seq1  TAAAAACAACGAAAGGATCCAATTC--TTTTTTTTTTTTTTTTTACCCAC  748
      |||||||||||||| ||||||||||  |||||||||||||||||||||||
seq2  TAAAAACAACGAAAAGATCCAATTCTTTTTTTTTTTTTTTTTTTACCCAC  750

seq1  TTGGAAAAGGAATATTTACAGAATGCCTATCATGTTCGGAGC-TCTGTTT  797
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  TTGGAAAAGGAATATTTACAGAATGCCTATCATGTTCGGAGCTTTTGTTT  800

seq1  CTGATGCGTCAGGAACCCCACAGTTTGTAACTCAAGGCAGGAATGGCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCGTCAGGAACCCCACAGTTTGTAACTCAAGGCAGGAATGGCACT  850

seq1  CCAGATAAATGACCAAGTGTACTGGGAATTCCGTGCTGCAACTCATTTTC  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGATAAATGACCAAGTGTACTGGGAATTCCGTGCTGC-ACTCATTTTC  899

seq1  AACATGGAAAGCGTTATCAATCTTTTTTGAAGGCCTTCTGGTAAAAGGAA  947
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  AACATGGAAAGCGTTATCAATCTTTTTTGAAGGCCTTCT-GTTAAAGGAA  948

seq1  GTGGCTCCGGGAGAGCCTGGTGGTGCAAGCTCCCCCAGAGGCTGAGGCAG  997
      |||||||||||||||| ||||||||| |||| ||||||| ||||| ||||
seq2  GTGGCTCCGGGAGAGCTTGGTGGTGC-AGCTTCCCCAGA-GCTGA-GCAG  995

seq1  GAGGATCAAAGATCGAGGTCTAACTGAGATACAGAAGTTCAAGGCCAACC  1047
      || ||||||||||||| ||||||||||  ||||||||||| ||||| |||
seq2  GA-GATCAAAGATCGA-GTCTAACTGAATTACAGAAGTTC-AGGCC-ACC  1041

seq1  TGGGCAACTTAGTTAGACCTTATTCTAAAAACAAAAAGCAAAAAGGAA-G  1096
      |||   ||||||||||||  ||||||||||   ||||||  ||||||| |
seq2  TGG--CACTTAGTTAGAC--TATTCTAAAA--CAAAAGC--AAAGGAATG  1083

seq1  GCTAGGGTCCTGGA-TCAATGACA  1119
      |||| ||||||| | |||||||||
seq2  GCTA-GGTCCTGAATTCAATGACA  1106

seq1: chr2_155799396_155800535
seq2: B6Ng01-160J15.g_66_1201 (reverse)

seq1  -CCCCTCACCGGCCCCCCCACACCTGCAGCAGAACCTCCGAGCATTGAAT  49
       ||| | |||||||||||||||| || ||||  | |||||||||||||||
seq2  CCCCTTTACCGGCCCCCCCACACTTGAAGCAAGAACTCCGAGCATTGAAT  50

seq1  GAATGATCAGGACAGGGAAGGTCCATGTCCCTGGAAGGAGACGAAGCATT  99
      ||||||||  |||||| ||||||||||| ||||| ||| |||||||||||
seq2  GAATGATCCAGACAGGAAAGGTCCATGT-CCTGG-AGGGGACGAAGCATT  98

seq1  TCATGCTATTGGGTGAGGCAG-ATGTGCTGAATA-GCCCAAATAGCCCCC  147
       |||||   |||||||||||| |||||||||||| |||||||||||||||
seq2  CCATGCCTATGGGTGAGGCAGAATGTGCTGAATAGGCCCAAATAGCCCCC  148

seq1  AAATCATCTCTGTTGGTTAGAAATTTAACCTTCATTTTGGTAGGGAAAAC  197
      |||||||||||||||||   |||||||||| ||| |||||||||||||||
seq2  AAATCATCTCTGTTGGTAGAAAATTTAACC-TCA-TTTGGTAGGGAAAAC  196

seq1  TTGTTTCTTCTAGATCTCCC--GAGACCC-AGAAATGTCTGTATTTCCTA  244
       |||||||||||||||||||  ||||||| | ||||||||||||||||||
seq2  -TGTTTCTTCTAGATCTCCCCGGAGACCCAAAAAATGTCTGTATTTCCTA  245

seq1  ATTCTGGGTATTTTAGTTGGTTGGTTGAGGTTTTTTGTTGTTTTGTTTTG  294
      |||||||||||||||||||||||| ||||||||||   ||||||||||||
seq2  ATTCTGGGTATTTTAGTTGGTTGG-TGAGGTTTTT--GTGTTTTGTTTTG  292

seq1  TTTTTATTTTGAGACAGGGTTTCATGCTGCCAAAACTGTCCTCCTGATCC  344
      ||||   |||||||||||| ||||||||||||||||||| ||||||||||
seq2  TTTT--ATTTGAGACAGGG-TTCATGCTGCCAAAACTGT-CTCCTGATCC  338

seq1  T-CCTTCACCTCCC-AAGGGCATGTACCACCACCTGGTATTATTCTGAAT  392
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACCTCCCAAAGGGCATGTACCACCACCTGGTATTATTCTGAAT  388

seq1  TCTCTGAAAGCGAGATTTTGCCTTTTTTGTCTCTGTCCCAGCATCAGGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAAGCGAGATTTTGCCTTTTTTGTCTCTGTCCCAGCATCAGGGC  438

seq1  CACCTAGTGCCTAGAGTGTAGACATCAGATGGAAAGAATGGATGGATCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTGCCTAGAGTGTAGACATCAGATGGAAAGAATGGATGGATCTC  488

seq1  CCTCCCTGTGTTCACTGTAGGTGGTTTCTGTAGAAGCAGAGGGAGCTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTGTTCACTGTAGGTGGTTTCTGTAGAAGCAGAGGGAGCTTTA  538

seq1  ACCTTTACCTTTGATGCCCTGCACTCTTTCTCTTCTCTTTCCGGCCAGTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACCTTTGATGCCCTGCACTCTTTCTCTTCTCTTTCCGGCCAGTA  588

seq1  GTTGGAGCAGGAGAACCAGTCTCTATGCAGCAGAGTGGAGGCCGCAGAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGCAGGAGAACCAGTCTCTATGCAGCAGAGTGGAGGCCGCAGAGC  638

seq1  AGCTGAGAAGCGCTTTGCAGGTGGACCTGGCGGAGGCAGAAAGGCGCAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAGCGCTTTGCAGGTGGACCTGGCGGAGGCAGAAAGGCGCAGG  688

seq1  GAAGCCCTGTGGGAGAAGAAAACTCAGCTGGAGACTCAGCTGCAGAAGGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGTGGGAGAAGAAAACTCAGCTGGAGACTCAGCTGCAGAAGGC  738

seq1  AGAGGAAGCGGGGGCTGAGCTACAGGCAGAGCTGAGGGGCACCCGAGAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCGGGGGCTGAGCTACAGGCAGAGCTGAGGGGCACCCGAGAAG  788

seq1  AAAAGGAAGAGCTTAAAGATAAATTAAGTGAGGTGAGAGGCCATTGCGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAGCTTAAAGATAAATTAAGTGAGGTGAGAGGCCATTGCGGG  838

seq1  TGTCACTTGCAGTGTGTTACATACTTGTTGTAAGCAGAAAGACTGAGAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGCAGTGTGTTACATACTTGTTGTAAGCAGAAAGACTGAGAAG  888

seq1  TGATGTGAGTGAGGCGGGTCTTCCCACTGTTTTAATGCGTTTCTATGGAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAGTGAGGCGGGTCTTCCCACTGTTTTAATGCGTTTCTATGGAG  938

seq1  TCCTGCGCTCACCCCCACATGCCAGTCCCCATGTGCTTCCTGCAGTCTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGCTCACCCCCACATGCCAGTCCCCATGTGCTTCCTGCAGTCTCT  988

seq1  CCCTCACTTCATACTCAGTGCGAACGTGTATCGTCTTCCTGCTGTAATTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTTCATACTCAGTGCGAACGTGTATCGTCTTCCTGCTGTAATTA  1038

seq1  CTTGTCTGTATATCCTTCACAGTCAGCCAAATTATTTACTTAGTTAGTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTATATCCTTCACAGTCAGCCAAATTATTTACTTAGTTAGTTT  1088

seq1  GGTCATTTGAGAGAAAATCTAACTCTAGCCCTAGATGGCCTGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTGAGAGAAAATCTAACTCTAGCCCTAGATGGCCTGGAATTC  1136