BAC Information

Click to search

BAC

Clone NameB6Ng01-160K18
Chromosome2 (Build37)
Map Location 47,234,867 - 47,235,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K18.bB6Ng01-160K18.g
ACCDH953985DH953986
length7251,059
definitionDH953985|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K18, 5' end.DH953986|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgaggtacacaatattcttat
acacaggaacctaccgtatgtgtcctctgctccttgaaactattaatgat
actgctatgctttcagccaggagcctagcgttaagtgtcctcttagaggc
tataactaacagtcaattgaaaaagattcagagacccacagctgaacatt
aactggaggttggggagtattgtggaagaattgaggaatggactgaggga
ccaaaaaagggcaaggactcaacaggaagaccaacaaaatttactaacct
ggacatttggggcctcccagagactgaactatgaattaaaaagggaacct
agctccctcccccagatatgtagcagatattcagcttggtcttcatgagg
ttcctgcaaaactggagctggggcttccatgaatctgttgcctccctaag
gattctcctctcctaacagggccaactattttagactcagtgagagttga
tgggcttaaccttacagtgacttgaagtggtggtagtatggtgtgggctt
tcccctttctcagagaatggaatgggggtaatgggggatgatctcctaga
aggaaaaggggtgctgatatttgggggtataaaaatgaataaataaattt
tttaaaaataacttttcccagagtgtgttcttggaaaaaacttttcaaaa
ttaaattgatattggttaatgtatg

gaattcatttctgtgatgagtctcattacatcaaatgtatcaacatgaga
cctttcaaaaaacatttcagaattcttactttaaaaagtatccattgccc
tctctccctttctctctaattctttgtctctgtttcaatatcttatttcc
ccacttttctctttctcctgattcctctcttcttttcttccttgatattc
tctagaatccaaactcatgcacatgtattttgtcaacttaagaaagccaa
acatataatctattaaaaatattactagtatatgcagttgcattctgtct
caggctagtgtataaaggcgctaatgtcactaaatactgttatttgattc
ttttataaaatataaatatagatattatgctgaattatataccatactta
ccataaaaatattagcttgtataaaaagaaagcaagtactcaatgactgc
atatgttgctttagcatatctaaaataaaagaagcacagaataatagttt
gaaaatagaataatttctatttttactttctcatggaaacattaatagag
ttcatatggtcatccatgaccttaattgataccaagaagggagtgtagat
tccaagacaatgaataaagatttgtgagtaaagacatgagaagcaatcac
caaaactacaggcagcagatttttttttaattattggaaattaaattaat
ttttgtatgatgtattttgatcatgcttttgcctccaccaactcctccca
cttaactttgttttaatttttttaatctctctctttagaaagcaaaaaaa
aaaaaaaaggaagtaaatatacagcaaactttgaaactctggaatcaagt
ggtttgataattaatgaactttatgttctgaactgattagcataatatca
taaagctctctatacattattaaagtttagagagaaacatatgatatttg
tagacatattggatttcatgtcatactatgtcaatatagaactgttatat
tacaactaactctactttgatagaaaattattacacactttgagaatgtg
tttctagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47234867_47235949
seq2: B6Ng01-160K18.g_69_1127

seq1  GAATTCATTTCTGTGATGAGTCTCATTACATCAAATGTATCAACATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGTGATGAGTCTCATTACATCAAATGTATCAACATGAGA  50

seq1  CCTTTCAAAAAACATTTCAGAATTCTTACTTTAAAAAGTATCCATTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAAAACATTTCAGAATTCTTACTTTAAAAAGTATCCATTGCCC  100

seq1  TCTCTCCCTTTCTCTCTAATTCTTTGTCTCTGTTTCAATATCTTATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTTTCTCTCTAATTCTTTGTCTCTGTTTCAATATCTTATTTCC  150

seq1  CCACTTTTCTCTTTCTCCTGATTCCTCTCTTCTTTTCTTCCTTGATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCTCTTTCTCCTGATTCCTCTCTTCTTTTCTTCCTTGATATTC  200

seq1  TCTAGAATCCAAACTCATGCACATGTATTTTGTCAACTTAAGAAAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCCAAACTCATGCACATGTATTTTGTCAACTTAAGAAAGCCAA  250

seq1  ACATATAATCTATTAAAAATATTACTAGTATATGCAGTTGCATTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATCTATTAAAAATATTACTAGTATATGCAGTTGCATTCTGTCT  300

seq1  CAGGCTAGTGTATAAAGGCGCTAATGTCACTAAATACTGTTATTTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTGTATAAAGGCGCTAATGTCACTAAATACTGTTATTTGATTC  350

seq1  TTTTATAAAATATAAATATAGATATTATGCTGAATTATATACCATACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAATATAAATATAGATATTATGCTGAATTATATACCATACTTA  400

seq1  CCATAAAAATATTAGCTTGTATAAAAAGAAAGCAAGTACTCAATGACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAATATTAGCTTGTATAAAAAGAAAGCAAGTACTCAATGACTGC  450

seq1  ATATGTTGCTTTAGCATATCTAAAATAAAAGAAGCACAGAATAATAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCTTTAGCATATCTAAAATAAAAGAAGCACAGAATAATAGTTT  500

seq1  GAAAATAGAATAATTTCTATTTTTACTTTCTCATGGAAACATTAATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAATAATTTCTATTTTTACTTTCTCATGGAAACATTAATAGAG  550

seq1  TTCATATGGTCATCCATGACCTTAATTGATACCAAGAAGGGAGTGTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGGTCATCCATGACCTTAATTGATACCAAGAAGGGAGTGTAGAT  600

seq1  TCCAAGACAATGAATAAAGATTTGTGAGTAAAGACATGAGAAGCAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACAATGAATAAAGATTTGTGAGTAAAGACATGAGAAGCAATCAC  650

seq1  CAAAACTACAGGCAGCAGATTTTTTTTTAATTATTGGAAATTAAATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTACAGGCAGCAGATTTTTTTTTAATTATTGGAAATTAAATTAAT  700

seq1  TTTTGTATGATGTATTTTGATCATGCTTTTGCCTCCACCAACTCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGATGTATTTTGATCATGCTTTTGCCTCCACCAACTCCTCCCA  750

seq1  CTTAACTTTGTTTTAATTTTTTTAATCTCTCTCTTTAGAAAGCAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTGTTTTAATTTTTTTAATCTCTCTCTTTAGAAAGCAAAAAAA  800

seq1  AAAAAAAAGGAAGTAAATATACAGCAAAACTTTGAAACTCTGGAATCCAA  850
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  AAAAAAAAGGAAGTAAATATACAGC-AAACTTTGAAACTCTGGAAT-CAA  848

seq1  GTGGTTTGATAATTAAATGAACTTTATGTTCTGAACTGATTAAGCATAAT  900
      |||||||||||||| |||||||||||||||||||||||||| ||||||| 
seq2  GTGGTTTGATAATT-AATGAACTTTATGTTCTGAACTGATT-AGCATAA-  895

seq1  TATCATAAAGCTCTCTATACATTATTAAAGTTTTAGAGAGAAACATATTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  TATCATAAAGCTCTCTATACATTATTAAAG-TTTAGAGAGAAACATA-TG  943

seq1  ATATTTGTTAGAACATATTTGGAATTTCCATGTCAATACCTTATTGTCAA  1000
      ||||||| ||| ||||| |||||  || |||||| ||||  || ||||||
seq2  ATATTTG-TAG-ACATA-TTGGA--TTTCATGTC-ATAC--TA-TGTCAA  984

seq1  TATAGAACTGTTATATTACAACTTAACTCTAAACCTTTGGATAAGAAAAT  1050
      |||||||||||||||||||||| ||||||||   |||| ||| |||||||
seq2  TATAGAACTGTTATATTACAAC-TAACTCTA---CTTT-GAT-AGAAAAT  1028

seq1  ATATAACACACTTTGAGAAAATGTGTTCTAGAC  1083
       ||| ||||||||||||||  ||| ||||||||
seq2  -TATTACACACTTTGAGAATGTGT-TTCTAGAC  1059


| Home | SequenceCutter | Blast | Download |