BAC Information

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BAC

Clone NameB6Ng01-160N22
Chromosome2 (Build37)
Map Location 66,642,618 - 66,789,299
singlet/doubletdoublet
Overlap geneLOC383707, LOC100039540
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
Downstream geneGm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N22.bB6Ng01-160N22.g
ACCDH954132DH954133
length1,0931,162
definitionDH954132|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N22, 5' end.DH954133|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,788,207 - 66,789,299)(66,642,618 - 66,643,803)
sequence
gaattctcagaagaatttctgcctggccaggtgtgatggcaaggcctata
atctcattactcagtaagcttaggaagggatcttcagtttgagtgcaatt
gtgggtaaacagaaaggtcctgtatccatggttctcagccttcttaatac
tgcaaacctttaatacagtttctcattttgtggtcccggactgtaaaatt
atttcattattactccatagctgaaattttgttactgtgatgaattgtaa
cataaatatctgataggcagtgtatcttatatgtgaccttctaaggagat
ataacccatgggttgagaatcactaccctatatcatgtcaagccagaaaa
atgacttagaagtgggggttcataaatagtcagttttgagatcttggtta
ttatactccacaaagtaacctttattattgtatttacttatttaaaatcc
taatttaaaaaaaaaactatttcaagcagttagattcatttgctctttca
gaataatttagaggtacttggaatttcagaatacctcttgaaaagaatga
ctgtttatgactttgatgcctggaatttgaacataagtttgtctattggc
ctgttacactaactagtagagaaattagatggagagaagaaagaatttac
ttatcagagatattcagatgtctattgtatgtaaatatttgtcattgaat
tactaataaaggttgatatgatctgaaatctctgattataacctattata
agttttcaaaaaacccaaagtgggacaaatatattgaactacaaagatgg
ccatagctgcgtgtaaatatcactacattcaatactacctagctttcagt
ttcctctgtgacactaaaaattaacagagagaagcatgacagtggacctt
gcattggtctggggatatagctaagttataaagtacctgactggcatgct
caaggcctagggttcagtctttaatactgcagaataacacaaatttaaca
aaataatcttgtatgggcaaaatatgctgatttatttaagacagattcag
gagcatcctccgaaaaagtttcattctcctttcctgggattgt
gaattctcagaaagacaaacactagtgcctggctacacagctatggattc
ctcacttctgcacctcctagatctccagcaaacagttatttcttgtgttt
tgctcgttattttaatccctccaaactgctcccgtgggattgcaatcacc
aataaaccaggcgcattaagctttaacttcaaatttattttctattattc
ttgcccaagccagggtagctagatgggtggtatttaatatttaatataat
ttctgtcctcatgtaactttcagtgatgtaggagtctatccattttctat
tagagcagtcatggatagctgaatagggctaaatgccccaagatacttga
gtttaaaaattcagacattaatccagtagggtgtgcccagaactgttccc
tccagattgcccaagtgttacagaagtactgggaattacagtgtgtggtt
tccttcattctaggaataggatttcttctgaagataatgaaaagaaaaac
tgataagatgtaaatgaagttgaaaaaatcagatagcaaactttatgtat
gactcatgattcagtatagtgaagggtttggccaagaaatgggatacccc
agactgctttaataaggagacactaactctgaccattgcaaatgtacctg
cagtaatcactgtatcctctccctataatacgacatgtttgatttttcaa
gtaatatttctctcattttactcatatataatcatgaaatactgaccagc
catttgaatttttaaaaaaaaaatatttctgattactaggtcctggatgc
tagggaggaagctaatactattacttttgtaaatggacatagtatccaat
agctcctaatgatttaatgctgtgctcatagtcagagcatcttctcaatc
tgtgaagcttccatctagcagtagatagaactacacagagactccaccag
tgtcacatgcagaaaacaggactgtaagtgctcagcctcagtcaggcact
cctagctcacccaagtcttcaggatctttgcaaacatagaccaaaaagac
cttagactagtggtggccacttcaagagagcatataaacttgaggctatt
ggcagcaggcgaagactctctttaggaggcgctgaaaagagttcagcaaa
agagtgggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_66788207_66789299
seq2: B6Ng01-160N22.b_44_1136 (reverse)

seq1  ACAATCCCAGGAAAGGAG-ATGATAC-TTCTCGGAGGATGCT-CTGAATC  47
      |||||||||||||||||| |||| || || |||||||||||| |||||||
seq2  ACAATCCCAGGAAAGGAGAATGAAACTTTTTCGGAGGATGCTCCTGAATC  50

seq1  TGTCTTAAATAAATCAGCATATTTTGCCCATACAAGATTATTTTGTTTAA  97
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCTTAAATAAATCAGCATATTTTGCCCATACAAGATTATTTTG-TTAA  99

seq1  ATTTGTTGTTATTCTTGCAGTATTAAAGACTGAACCCTAGGCCTTGAGCA  147
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTG-TGTTATTC-TGCAGTATTAAAGACTGAACCCTAGGCCTTGAGCA  147

seq1  TGCCAGTCAGGTACTTTATAACTTAGCTATATCCCCAGACCAATGCAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCAGGTACTTTATAACTTAGCTATATCCCCAGACCAATGCAAGG  197

seq1  TCCACTGTCATGCTTCTCTCTGTTAATTTTTAGTGTCACAGAGGAAACTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTCATGCTTCTCTCTGTTAATTTTTAGTGTCACAGAGGAAACTG  247

seq1  AAAGCTAGGTAGTATTGAATGTAGTGATATTTACACGCAGCTATGGCCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGGTAGTATTGAATGTAGTGATATTTACACGCAGCTATGGCCAT  297

seq1  CTTTGTAGTTCAATATATTTGTCCCACTTTGGGTTTTTTGAAAACTTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTTCAATATATTTGTCCCACTTTGGGTTTTTTGAAAACTTATA  347

seq1  ATAGGTTATAATCAGAGATTTCAGATCATATCAACCTTTATTAGTAATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATAATCAGAGATTTCAGATCATATCAACCTTTATTAGTAATTC  397

seq1  AATGACAAATATTTACATACAATAGACATCTGAATATCTCTGATAAGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAATATTTACATACAATAGACATCTGAATATCTCTGATAAGTAA  447

seq1  ATTCTTTCTTCTCTCCATCTAATTTCTCTACTAGTTAGTGTAACAGGCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTTCTCTCCATCTAATTTCTCTACTAGTTAGTGTAACAGGCCA  497

seq1  ATAGACAAACTTATGTTCAAATTCCAGGCATCAAAGTCATAAACAGTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAACTTATGTTCAAATTCCAGGCATCAAAGTCATAAACAGTCAT  547

seq1  TCTTTTCAAGAGGTATTCTGAAATTCCAAGTACCTCTAAATTATTCTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAGAGGTATTCTGAAATTCCAAGTACCTCTAAATTATTCTGAA  597

seq1  AGAGCAAATGAATCTAACTGCTTGAAATAGTTTTTTTTTTAAATTAGGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAATGAATCTAACTGCTTGAAATAGTTTTTTTTTTAAATTAGGAT  647

seq1  TTTAAATAAGTAAATACAATAATAAAGGTTACTTTGTGGAGTATAATAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAGTAAATACAATAATAAAGGTTACTTTGTGGAGTATAATAAC  697

seq1  CAAGATCTCAAAACTGACTATTTATGAACCCCCACTTCTAAGTCATTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTCAAAACTGACTATTTATGAACCCCCACTTCTAAGTCATTTTT  747

seq1  CTGGCTTGACATGATATAGGGTAGTGATTCTCAACCCATGGGTTATATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGACATGATATAGGGTAGTGATTCTCAACCCATGGGTTATATCT  797

seq1  CCTTAGAAGGTCACATATAAGATACACTGCCTATCAGATATTTATGTTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGGTCACATATAAGATACACTGCCTATCAGATATTTATGTTAC  847

seq1  AATTCATCACAGTAACAAAATTTCAGCTATGGAGTAATAATGAAATAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCACAGTAACAAAATTTCAGCTATGGAGTAATAATGAAATAATT  897

seq1  TTACAGTCCGGGACCACAAAATGAGAAACTGTATTAAAGGTTTGCAGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCCGGGACCACAAAATGAGAAACTGTATTAAAGGTTTGCAGTAT  947

seq1  TAAGAAGGCTGAGAACCATGGATACAGGACCTTTCTGTTTACCCACAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCTGAGAACCATGGATACAGGACCTTTCTGTTTACCCACAATT  997

seq1  GCACTCAAACTGAAGATCCCTTCCTAAGCTTACTGAGTAATGAGATTATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAACTGAAGATCCCTTCCTAAGCTTACTGAGTAATGAGATTATA  1047

seq1  GGCCTTGCCATCACACCTGGCCAGGCAGAAATTCTTCTGAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGCCATCACACCTGGCCAGGCAGAAATTCTTCTGAGAATTC  1093

seq1: chr2_66642618_66643803
seq2: B6Ng01-160N22.g_68_1229

seq1  GAATTCTCAGAAAGACAAACACTAGTGCCTGGCTACACAGCTATGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAAGACAAACACTAGTGCCTGGCTACACAGCTATGGATTC  50

seq1  CTCACTTCTGCACCTCCTAGATCTCCAGCAAACAGTTATTTCTTGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTGCACCTCCTAGATCTCCAGCAAACAGTTATTTCTTGTGTTT  100

seq1  TGCTCGTTATTTTAATCCCTCCAAACTGCTCCCGTGGGATTGCAATCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTTATTTTAATCCCTCCAAACTGCTCCCGTGGGATTGCAATCACC  150

seq1  AATAAACCAGGCGCATTAAGCTTTAACTTCAAATTTATTTTCTATTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAGGCGCATTAAGCTTTAACTTCAAATTTATTTTCTATTATTC  200

seq1  TTGCCCAAGCCAGGGTAGCTAGATGGGTGGTATTTAATATTTAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAGCCAGGGTAGCTAGATGGGTGGTATTTAATATTTAATATAAT  250

seq1  TTCTGTCCTCATGTAACTTTCAGTGATGTAGGAGTCTATCCATTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTCATGTAACTTTCAGTGATGTAGGAGTCTATCCATTTTCTAT  300

seq1  TAGAGCAGTCATGGATAGCTGAATAGGGCTAAATGCCCCAAGATACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGTCATGGATAGCTGAATAGGGCTAAATGCCCCAAGATACTTGA  350

seq1  GTTTAAAAATTCAGACATTAATCCAGTAGGGTGTGCCCAGAACTGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAATTCAGACATTAATCCAGTAGGGTGTGCCCAGAACTGTTCCC  400

seq1  TCCAGATTGCCCAAGTGTTACAGAAGTACTGGGAATTACAGTGTGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTGCCCAAGTGTTACAGAAGTACTGGGAATTACAGTGTGTGGTT  450

seq1  TCCTTCATTCTAGGAATAGGATTTCTTCTGAAGATAATGAAAAGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTCTAGGAATAGGATTTCTTCTGAAGATAATGAAAAGAAAAAC  500

seq1  TGATAAGATGTAAATGAAGTTGAAAAAATCAGATAGCAAACTTTATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGATGTAAATGAAGTTGAAAAAATCAGATAGCAAACTTTATGTAT  550

seq1  GACTCATGATTCAGTATAGTGAAGGGTTTGGCCAAGAAATGGGATACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATGATTCAGTATAGTGAAGGGTTTGGCCAAGAAATGGGATACCCC  600

seq1  AGACTGCTTTAATAAGGAGACACTAACTCTGACCATTGCAAATGTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTTAATAAGGAGACACTAACTCTGACCATTGCAAATGTACCTG  650

seq1  CAGTAATCACTGTATCCTCTCCCTATAATACGACATGTTTGATTTTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCACTGTATCCTCTCCCTATAATACGACATGTTTGATTTTTCAA  700

seq1  GTAATATTTCTCTCATTTTACTCATATATAATCATGAAATACTGACCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTCTCTCATTTTACTCATATATAATCATGAAATACTGACCAGC  750

seq1  CATTTGAATTTTTAAAAAAAAAATATTTCTGATTACTAGGTCCTGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATTTTTAAAAAAAAAATATTTCTGATTACTAGGTCCTGGATGC  800

seq1  TAGGGAGGAAGCTAATACTATTACTTTTGTAAATGGACATAGTATCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGGAGGAAGCTAATACTATTACTTTTGTAAATGGACATAGTATCC-AA  849

seq1  TAGCTCCTAATGATTTAATGCTGTGCTCATAAGTCAGAGCATCTTCTCAA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGCTCCTAATGATTTAATGCTGTGCTCAT-AGTCAGAGCATCTTCTCAA  898

seq1  TCTGTGAAGCTTCCATCTAAGCAGTAGATAGAACTAACACAGAGACTCCA  950
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TCTGTGAAGCTTCCATCT-AGCAGTAGATAGAACT-ACACAGAGACTCCA  946

seq1  CCAAGTGGTCACCATGCAGAAAACAAGACTGTAAAGTGCTCAGCCCTCAG  1000
      || ||| |||| ||||||||||||| |||||| |||||||||| ||||||
seq2  CC-AGT-GTCA-CATGCAGAAAACAGGACTGT-AAGTGCTCAG-CCTCAG  991

seq1  TCAGGCACTCCTAGCTCACCCCAAGTCTCAGGGATCTTTGCAAAACATAG  1050
      |||||||||||||||||| |||||||||   |||||||||| ||||||||
seq2  TCAGGCACTCCTAGCTCA-CCCAAGTCTTCAGGATCTTTGC-AAACATAG  1039

seq1  ACCAAAAGGACCCTAAGAACCAAAGGTGGTGGGCAACTTCAAAGAGAGCA  1100
      ||||||| |||| ||   || |   ||||| ||| ||||| |||||||||
seq2  ACCAAAAAGACCTTA--GACTA---GTGGT-GGCCACTTC-AAGAGAGCA  1082

seq1  TATAAACTTGAGGCTATTTTGGCAGCAGGCGAAGAC-CTCTTCAGGAGGC  1149
      ||||||||||||||||  |||||||||||||||||| ||||| |||||||
seq2  TATAAACTTGAGGCTA--TTGGCAGCAGGCGAAGACTCTCTTTAGGAGGC  1130

seq1  AGCTAGAAAAGAGTCCCAGCAAAAGAGTGGAGGAGGT  1186
       ||| |||||||||  |||||||||||||  ||||||
seq2  -GCT-GAAAAGAGT-TCAGCAAAAGAGTG--GGAGGT  1162