BAC Information

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BAC

Clone NameB6Ng01-160P17
Chromosome2 (Build37)
Map Location 79,407,005 - 79,408,062
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P17.bB6Ng01-160P17.g
ACCDH954218DH954219
length2691,049
definitionDH954218|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P17, 5' end.DH954219|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aacatctgaaattgtctttgcagtggcagacgatgggcatcagcacatcg
gtgtcatgtacagatgcctggcactcactattgatttgctgtaatgtgaa
attgtgcatctggatagatagctgccttttcctcttcctctccttttctc
cttctccacttcctcctcctcctcctcctcctcctctacctctacctcct
cctcctcctcctcctccactacatcatcttcctcatcttcttcttctgcg
ggttcgtcttctaattttt
gaattcaggtttccttcagtgcatggggctgatggtatagatgaggggaa
ggaaaagcaggtcatgtactcttttctaccatgtcccataatctatattg
tgtgcattattcacggataatcatgaagatgaggatccttgagctttcca
ggctaataccaataggaagtctaagtgattgtgcaattatgatttcaaaa
gtatttctgactcctttcagacccagctgagagaagcatggctataatta
gagtgcatgccttcacctctgctgacaaggtccttgtctgacctgttgtc
cttagctgggctcactattcatggaggaatcttggctctctaaaaagtct
ttgaaatgtaaattccgtgggcattggagtacaaatagtacttagcatgg
cataaactcattagtagtttttctttgcatgggtgtatgggtgtttgtgg
gtgcacatacatacgcacctgtgcatgtatgtacatgcaaatacatatgt
atgcatatatggagagagcagaggttgatgactgtcttcctcaaccatta
tctatttatttacggaggcaggattgctcttttgaaccgggtgctcacta
tttcacagtgtagctagtcactgaggatcccctgtccttgcatctcaagt
tctgaggttacaggcaagccaccgccactgagcctgtcacttacatgggt
gcaggatttgacctcagttccttgtgactgtatgacagacactttgcaca
atgaactatctcccaatcccccttttcaagtgagtttgcttatttgtttt
tgtttgtttcaattctttattttgtcttgagagaatctacctatgccagg
cactgagatgttctcctttttttttttttttctattttcacataattcat
tgttcccaaagatcacaagtagataatgtcactgttttaaaacacagaac
tttttcagacttgttagactttggcccaagggcaaatgctacatgagtaa
ttaacagttacatttaagctttgtggccactgggaaccattctctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79407005_79408062
seq2: B6Ng01-160P17.g_69_1117 (reverse)

seq1  TGAAAGAGAATGGTTTCCCAGTGGCCCACAAAGCTTAAATTGTTACTGTT  50
      ||||||||||||| |||||||||| |||||||||||||| ||| ||||||
seq2  TGAAAGAGAATGG-TTCCCAGTGG-CCACAAAGCTTAAA-TGTAACTGTT  47

seq1  ATGTACTCATGTAGCATTGTGGCCTTGGG-CAAAGTCTTAACAGTTCTGA  99
      |  ||||||||||||||| || ||||||| ||||||| |||||  |||||
seq2  AATTACTCATGTAGCATT-TGCCCTTGGGCCAAAGTC-TAACAAGTCTGA  95

seq1  AACAGTTTCTTGTGTTTTAAAACAGTGACATTATCTACTTGGTGGATCTT  149
      || ||||   |||||||||||||||||||||||||||||||   ||||||
seq2  AAAAGTT--CTGTGTTTTAAAACAGTGACATTATCTACTTG--TGATCTT  141

seq1  TGGGGAACAATGAATTATGTTGAAAATAG-AAAAAAAAAAAAAAGGAGAA  198
      | ||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  T-GGGAACAATGAATTATG-TGAAAATAGAAAAAAAAAAAAAAAGGAGAA  189

seq1  CATCTCAGTGCCTGGCATAGGTAGATTCTCTCAAGACAAAATAAAGAATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGCCTGGCATAGGTAGATTCTCTCAAGACAAAATAAAGAATT  239

seq1  GAAACAAACAAAAACAAATAAGCAAACTCACTTGAAAAGGGGGATTGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAAAAACAAATAAGCAAACTCACTTGAAAAGGGGGATTGGGA  289

seq1  GATAGTTCATTGTGCAAAGTGTCTGTCATACAGTCACAAGGAACTGAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTCATTGTGCAAAGTGTCTGTCATACAGTCACAAGGAACTGAGGT  339

seq1  CAAATCCTGCACCCATGTAAGTGACAGGCTCAGTGGCGGTGGCTTGCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTGCACCCATGTAAGTGACAGGCTCAGTGGCGGTGGCTTGCCTG  389

seq1  TAACCTCAGAACTTGAGATGCAAGGACAGGGGATCCTCAGTGACTAGCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAGAACTTGAGATGCAAGGACAGGGGATCCTCAGTGACTAGCTA  439

seq1  CACTGTGAAATAGTGAGCACCCGGTTCAAAAGAGCAATCCTGCCTCCGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAAATAGTGAGCACCCGGTTCAAAAGAGCAATCCTGCCTCCGTA  489

seq1  AATAAATAGATAATGGTTGAGGAAGACAGTCATCAACCTCTGCTCTCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGATAATGGTTGAGGAAGACAGTCATCAACCTCTGCTCTCTCC  539

seq1  ATATATGCATACATATGTATTTGCATGTACATACATGCACAGGTGCGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCATACATATGTATTTGCATGTACATACATGCACAGGTGCGTAT  589

seq1  GTATGTGCACCCACAAACACCCATACACCCATGCAAAGAAAAACTACTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCACCCACAAACACCCATACACCCATGCAAAGAAAAACTACTAA  639

seq1  TGAGTTTATGCCATGCTAAGTACTATTTGTACTCCAATGCCCACGGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATGCCATGCTAAGTACTATTTGTACTCCAATGCCCACGGAATT  689

seq1  TACATTTCAAAGACTTTTTAGAGAGCCAAGATTCCTCCATGAATAGTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAAGACTTTTTAGAGAGCCAAGATTCCTCCATGAATAGTGAG  739

seq1  CCCAGCTAAGGACAACAGGTCAGACAAGGACCTTGTCAGCAGAGGTGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAAGGACAACAGGTCAGACAAGGACCTTGTCAGCAGAGGTGAAG  789

seq1  GCATGCACTCTAATTATAGCCATGCTTCTCTCAGCTGGGTCTGAAAGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACTCTAATTATAGCCATGCTTCTCTCAGCTGGGTCTGAAAGGAG  839

seq1  TCAGAAATACTTTTGAAATCATAATTGCACAATCACTTAGACTTCCTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATACTTTTGAAATCATAATTGCACAATCACTTAGACTTCCTATT  889

seq1  GGTATTAGCCTGGAAAGCTCAAGGATCCTCATCTTCATGATTATCCGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAGCCTGGAAAGCTCAAGGATCCTCATCTTCATGATTATCCGTGA  939

seq1  ATAATGCACACAATATAGATTATGGGACATGGTAGAAAAGAGTACATGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCACACAATATAGATTATGGGACATGGTAGAAAAGAGTACATGAC  989

seq1  CTGCTTTTCCTTCCCCTCATCTATACCATCAGCCCCATGCACTGAAGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCTTCCCCTCATCTATACCATCAGCCCCATGCACTGAAGGAA  1039

seq1  ACCTGAATTC  1058
      ||||||||||
seq2  ACCTGAATTC  1049