BAC Information

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BAC

Clone NameB6Ng01-161C14
Chromosome2 (Build37)
Map Location 163,002,975 - 163,004,184
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
Downstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161C14.bB6Ng01-161C14.g
ACCDH954353DH954354
length1,2591,195
definitionDH954353|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C14, 5' end.DH954354|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgacatagctaaagcctcagtgttccaacagtcctagaacgtcc
ttgagctagacagtgacattcagagtggcctctggtattacactatcaat
aaaagccaagtcgctcccatatacaggaatttacaatggtttagaaagta
gatcgggctgtggttttagagtattgcattattcatgagatggttagcta
gaacggaactccctagttagaaccatgacttgggtgtgaaagcccttgcc
ctaggagagtaaagatctcacacctggctcctaagactatagctgacctt
agatagggctgactttgtctcagttgttttattgcccagttcctgccagt
ctttgtgttttcattcctctgttctgtgtaagagtcattaagcatccggt
tacctcatttgtaccttgtgggtatgtcacccaacttccttattgtcttc
tgcgtaaaaagtctgatgctcgatttgaaaaattacgttcagattccaca
cgacctttcctgtgtgcgtctgtttgtcactcatcctacgctttgtccac
ccacaattagagacccgttccacgcagacaaaggggcccagagggtctgc
ggcaggaagccttatttctccataaatcttgtcctaattttaccaaaaca
gcacatggcatcatcatttctgttgctgcacaagctacagatatgggtac
cagcctccatctcttccttcccaaatatcccttgcctggacactctaagc
accgttggccgctcttccacggtgagttccaaatctctcacatgtttctc
cttcccaccagtcacccttttaagatatacaagccaggtccttctagcct
ttactctggctttaaactgttcattgcaccgggcaaagtgacgtacgcct
ttatcttagcacctgggaagcagaagcagcgtgacctcagagtttgagcc
agctgatcgtctagaggagttcagcagcaggctacatagtgaggcctgcc
tcaaacgaagatgcaaacggtttcattgctcatgaacctccaagtagata
gatcgattgccaatgatcgagaaataagtacaggctggcatacgtacatt
gcatgcgtgtaaatttcactgcatgcagataatggtgtattgaggtactc
taaggacataaagcacgttacgcctattaccatgtccacactgtaccaag
aatacgtcctcctcgcgctctaaagtagtgatcggactgatatcagctgc
tctagcatg
gaattccacatcagccacgttgtatgaactgcagttctgtttcgcagctt
tgtgtcctccgtagatgggagcatcccccattctgggaggctttcttcat
ctctaaaatgggtaacactctttacgggatggaggaagaccacagccgtt
ttgttacaaagccaagtgagctgtgtcaaccagcaaggcttccttccttt
ctggttccctccccaccttgtggagtgctgcccacccagctgtatttctc
tccccccccccccccggagccgttcctcctccacacgtgtacattgtttg
ggaattcaggctgcaagatgcaagatgcgagctgagcggtcggtcggaaa
cccatcagctcccccagcttccgtctctggcctacaaatgtcacgttcat
ccaaatagcaatttcagggcaagcttctttcctgatttgttggtgcttct
gaaaaattaaatggagagaacatcgaggctccagggaacacactgaactc
ttcacaaaagctgtcagctctttccatcccccaacactccaagcaaatct
ccccataaccctgtgttctttcccccagagcagaggtgctccctcttgct
ctgaggatctgggaaaccgacaacccacaggtttggggacagattcttaa
gtttaggccagagtttctgtcctctgtccccttcttcacgtccatctgga
actgggtgctataggagaggctgagggaccagggggacagtaaagcattt
gtcaggcacttgtaaaggactgggttcatgattcaatcttcatataaaag
ctaggtgtggccacacacacctgcatctcagtactggggggacagagaca
ggaggattcctggagttcaatggctagccagtctagcctcattagtggga
aattctatttcagatatttgtggaccctccagaaggatactcaaggttga
ctctaacctcacaaacatatacatgcatgcacacccactgcaaatatgag
cacacacacattcaactcaacataatcactgggacaataattgaaagcgg
cagcctcatgaactttaaccagtccacattcctgagccgggcatcaagca
ttcaaagaacgcattgcagcccactcccaccccgagcaatctcttcttaa
ttcagaagcctcacgccacctggaaacaaagttggggcgaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163002975_163004184
seq2: B6Ng01-161C14.g_69_1263

seq1  GAATTCCACATCAGCCACGTTGTATGAACTGCAGTTCTGTTTCGCAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCAGCCACGTTGTATGAACTGCAGTTCTGTTTCGCAGCTT  50

seq1  TGTGTCCTCCGTAGATGGGAGCATCCCCCATTCTGGGAGGCTTTCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCCGTAGATGGGAGCATCCCCCATTCTGGGAGGCTTTCTTCAT  100

seq1  CTCTAAAATGGGTAACACTCTTTACGGGATGGAGGAAGACCACAGCCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATGGGTAACACTCTTTACGGGATGGAGGAAGACCACAGCCGTT  150

seq1  TTGTTACAAAGCCAAGTGAGCTGTGTCAACCAGCAAGGCTTCCTTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAAAGCCAAGTGAGCTGTGTCAACCAGCAAGGCTTCCTTCCTTT  200

seq1  CTGGTTCCCTCCCCACCTTGTGGAGTGCTGCCCACCCAGCTGTATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCCTCCCCACCTTGTGGAGTGCTGCCCACCCAGCTGTATTTCTC  250

seq1  TCCCCCCCCCCCCCCGGAGCCGTTCCTCCTCCACACGTGTACATTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCCCCCGGAGCCGTTCCTCCTCCACACGTGTACATTGTTTG  300

seq1  GGAATTCAGGCTGCAAGATGCAAGATGCGAGCTGAGCGGTCGGTCGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGGCTGCAAGATGCAAGATGCGAGCTGAGCGGTCGGTCGGAAA  350

seq1  CCCATCAGCTCCCCCAGCTTCCGTCTCTGGCCTACAAATGTCACGTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGCTCCCCCAGCTTCCGTCTCTGGCCTACAAATGTCACGTTCAT  400

seq1  CCAAATAGCAATTTCAGGGCAAGCTTCTTTCCTGATTTGTTGGTGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGCAATTTCAGGGCAAGCTTCTTTCCTGATTTGTTGGTGCTTCT  450

seq1  GAAAAATTAAATGGAGAGAACATCGAGGCTCCAGGGAACACACTGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAAATGGAGAGAACATCGAGGCTCCAGGGAACACACTGAACTC  500

seq1  TTCACAAAAGCTGTCAGCTCTTTCCATCCCCCAACACTCCAAGCAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAAGCTGTCAGCTCTTTCCATCCCCCAACACTCCAAGCAAATCT  550

seq1  CCCCATAACCCTGTGTTCTTTCCCCCAGAGCAGAGGTGCTCCCTCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAACCCTGTGTTCTTTCCCCCAGAGCAGAGGTGCTCCCTCTTGCT  600

seq1  CTGAGGATCTGGGAAACCGACAACCCACAGGTTTGGGGACAGATTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATCTGGGAAACCGACAACCCACAGGTTTGGGGACAGATTCTTAA  650

seq1  GTTTAGGCCAGAGTTTCTGTCCTCTGTCCCCTTCTTCACGTCCATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGCCAGAGTTTCTGTCCTCTGTCCCCTTCTTCACGTCCATCTGGA  700

seq1  ACTGGGTGCTATAGGAGAGGCTGAGGGACCAGGGGGACAGTAAAGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGCTATAGGAGAGGCTGAGGGACCAGGGGGACAGTAAAGCATTT  750

seq1  GTCAGGCACTTGT-AAGGACTGGGTTCATGATTCAATCTTCATATAAAAG  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCACTTGTAAAGGACTGGGTTCATGATTCAATCTTCATATAAAAG  800

seq1  CTAGGTGTGGCCACACACACCTGCATCTCAGTACTGGGGGGACAGAGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTGGCCACACACACCTGCATCTCAGTACTGGGGGGACAGAGACA  850

seq1  GGAGGATTCCTGGAGTTCAATGGCTAGCCAGTCTAGCCTCATTAGTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCCTGGAGTTCAATGGCTAGCCAGTCTAGCCTCATTAGTGGGA  900

seq1  AATTCTATTTCAGAATATTTGTGGACCCTCCAGAAAGGATACTCAAGGTT  949
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  AATTCTATTTCAG-ATATTTGTGGACCCTCCAG-AAGGATACTCAAGGTT  948

seq1  GACCTCTAACCTTCACAAACATATACATGCATGCACACCCACTGCCACAT  999
      || |||||||| |||||||||||||||||||||||||||||||| || ||
seq2  GA-CTCTAACC-TCACAAACATATACATGCATGCACACCCACTG-CAAAT  995

seq1  ATGAGCACACACACATTCACACTCATACACCATCAACTGGACAATAATCT  1049
      ||||||||||||||||||| ||||| |||  ||||   |||||||||| |
seq2  ATGAGCACACACACATTCA-ACTCA-ACATAATCACTGGGACAATAAT-T  1042

seq1  GAAAGCGGCAGCTCAATGAACCTTAACCAAGTCCACATTCCT-AGCACGG  1098
      ||||||||||||   |||||| |||||| ||||||||||||| ||| |||
seq2  GAAAGCGGCAGCCTCATGAACTTTAACC-AGTCCACATTCCTGAGC-CGG  1090

seq1  CCATCACAAGCAATGCAAAG-ACGCATTTGCAGCCCACTCCCACCCC-AG  1146
       |||  ||||| || ||||| ||||| |||||||||||||||||||| ||
seq2  GCAT--CAAGC-ATTCAAAGAACGCA-TTGCAGCCCACTCCCACCCCGAG  1136

seq1  CAATCTCTCCTTAAATTCAGAAGCCTTACAGCCACCCAGAAACAAAGATT  1196
      |||||||| ||| ||||||||||||| || ||||||  ||||||||| ||
seq2  CAATCTCTTCTT-AATTCAGAAGCCTCAC-GCCACCTGGAAACAAAG-TT  1183

seq1  GGGGGTAGAAAATA  1210
      ||||   |||||||
seq2  GGGG--CGAAAATA  1195