BAC Information

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BAC

Clone NameB6Ng01-161E18
Chromosome2 (Build37)
Map Location 81,017,482 - 81,018,553
singlet/doubletsinglet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E18.bB6Ng01-161E18.g
ACCDH954452DH954453
length9481,082
definitionDH954452|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E18, 5' end.DH954453|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcctgaggaatacagaatggttgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggatatgcaaatcaaaacaaccctgagat
tgcacctcataccagtcagaatggctaagatcaaaaattcaggtaacagc
agatgctgtctaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtccaaccactctggaaatcagtctggcggtcgctca
gaaaattggacagagtactaccagaggatcctgcaatacctgtcctgggc
atatatccagaagatgtttcaacttgtaagaaggacacatgctccactat
gttcatagcagccttatttatagtagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctgagtgaggtaacccaatcacaaaggaactcacacaata
tgtattcactggtaagtggatattagcccagaaacttagaatacccaaga
tataagacacaatttagaaacacatgaaactcaagaagaacgaagaccaa
agtgtggatactttgccccttcttataatggggaacaaacacccatggta
ggagtgtcagagacaaattttggagcagagacaaaaggatggaccatcta
gagactgcatattccagggattcattccatatcagcctctaacactgaca
ccatttgcatatacactagcaagaattttgctgaacgaccctgatatagt
gtcccttggagacattgctggtgccatgcaacaccgaagtggatgcttac
agtcaactatttgatggatcccagggactacttggaggactagaaaag
gaattctttgtttagctctgtaccccatttttaaattgggttatttgttt
ttctggagtctaacttgtgagttctttgtgtattttggatattagccctc
tattcaatgtagggttagtaaagatctttcccaagctgttactgttttgt
cccactgacagtgtcctttctcttacagaaacttgtaatttcatgaggtc
tcatttgtcaattgttgctcatttttacagtacctagaagatacaactat
ttcccaagagtcagagactagggtctcagaatgctcaactataaaatggc
agcaggtaaatatccctatccatttccatttcatttactatagtatttat
ctaataatgtattcattaaaagacggtataattattaattataactctga
caatagcagttagctcaatccatgtaagtattatagaaatgcctttcttc
atgtaactaaacatctataggcatatatatatatatatatatatatagcc
actcaaaagctactgaaactaccacaccacaaacacacacacgcacacac
acacagagagtcttggttcctttttttcattaccctagtttcacaattag
acaagctctcttaatggtgagaaaatttgccactaggattttaagattcc
caatgcttcagagactatgattccaaagagaaatagcaagtttttaaata
gtagaacatcctgaattcaaacttcctgaagtactaacaatatgtccaga
ctaacaacaagtttaaccattttaaggtgcatttattaaagagcccatca
aataggttttcctacaggaaaacattattgtacatggacaaaatttttta
ttaggccacattgggcctgggaactgggcagggaatgaaacacttgtact
tgagaccagcattgtagaatcaataatgtttcttggatacaaagaagagt
gttttatcagacttatttatgtatctattttatttattgtttcttttatt
tgcttatgctacttaaaagactcagactaccactgagctggtcttcttaa
caatcaggataggtttaaattgatttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81017482_81018553
seq2: B6Ng01-161E18.g_68_1149 (reverse)

seq1  AAAAATAATCTATTTTAAACTAATCTTGATTGTTA--GAGA-CAGCTCAG  47
      ||||||||   | |||||||  ||| |||||||||   ||| ||||||||
seq2  AAAAATAAATCAATTTAAACCTATCCTGATTGTTAAGAAGACCAGCTCAG  50

seq1  TGGTAGTCTTGAGTCTAATAAGTAGCAT-AGCAAAATAAAGAAACAATTA  96
      |||||||| |||||||  |||||||||| ||||||  ||||||||||| |
seq2  TGGTAGTC-TGAGTCTTTTAAGTAGCATAAGCAAATAAAAGAAACAATAA  99

seq1  AATAAATAGATACATAAATAAGTCTTGATAAAACACTCTTCTTTGTATCC  146
      |  ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAAAATAGATACATAAATAAGTC-TGATAAAACACTCTTCTTTGTATCC  148

seq1  AAG-AACATTA-TGATTCTACAATGCTGGTCTCAAGTAC-AGTGTTTCAT  193
      ||| ||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AAGAAACATTATTGATTCTACAATGCTGGTCTCAAGTACAAGTGTTTCAT  198

seq1  TCCCTG-CCAGTTTCCAGG-CCAATGTGGCCTAATAAATATTTTTGTCCT  241
      |||||| |||||| ||||| |||||||||||||||||| | |||||||| 
seq2  TCCCTGCCCAGTTCCCAGGCCCAATGTGGCCTAATAAAAAATTTTGTCCA  248

seq1  TGTAC-ATAATGTTTTCCTGTAGG-AAACCTATTTGATGGGCTCTTTAAT  289
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTACAATAATGTTTTCCTGTAGGAAAACCTATTTGATGGGCTCTTTAAT  298

seq1  AAATGCACCTTAAAATGGTTAAACTTGTTGTTAGTCTGGACATATTGTTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACCTTAAAATGGTTAAACTTGTTGTTAGTCTGGACATATTGTTA  348

seq1  GTACTTCAGGAAGTTTGAATTCAGGATGTTCTACTATTTAAAAACTTGCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCAGGAAGTTTGAATTCAGGATGTTCTACTATTTAAAAACTTGCT  398

seq1  ATTTCTCTTTGGAATCATAGTCTCTGAAGCATTGGGAATCTTAAAATCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTGGAATCATAGTCTCTGAAGCATTGGGAATCTTAAAATCCT  448

seq1  AGTGGCAAATTTTCTCACCATTAAGAGAGCTTGTCTAATTGTGAAACTAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAATTTTCTCACCATTAAGAGAGCTTGTCTAATTGTGAAACTAG  498

seq1  GGTAATG-AAAAAAGGAACCAAGACTCTCTGTGTGTGTGTGCGTGTGTGT  538
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGAAAAAAAGGAACCAAGACTCTCTGTGTGTGTGTGCGTGTGTGT  548

seq1  GTTTGTGGTGTGGTAGTTTCAGTAGCTTTTGAGTGGCTATATATATATAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGTGTGGTAGTTTCAGTAGCTTTTGAGTGGCTATATATATATAT  598

seq1  ATATATATATATGCCTATAGATGTTTAGTTACATGAAGAAAGGCATTTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGCCTATAGATGTTTAGTTACATGAAGAAAGGCATTTCT  648

seq1  ATAATACTTACATGGATTGAGCTAACTGCTATTGTCAGAGTTATAATTAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTACATGGATTGAGCTAACTGCTATTGTCAGAGTTATAATTAA  698

seq1  TAATTATACCGTCTTTTAATGAATACATTATTAGATAAATACTATAGTAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACCGTCTTTTAATGAATACATTATTAGATAAATACTATAGTAA  748

seq1  ATGAAATGGAAATGGATAGGGATATTTACCTGCTGCCATTTTATAGTTGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGAAATGGATAGGGATATTTACCTGCTGCCATTTTATAGTTGA  798

seq1  GCATTCTGAGACCCTAGTCTCTGACTCTTGGGAAATAGTTGTATCTTCTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGAGACCCTAGTCTCTGACTCTTGGGAAATAGTTGTATCTTCTA  848

seq1  GGTACTGTAAAAATGAGCAACAATTGACAAATGAGACCTCATGAAATTAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTAAAAATGAGCAACAATTGACAAATGAGACCTCATGAAATTAC  898

seq1  AAGTTTCTGTAAGAGAAAGGACACTGTCAGTGGGACAAAACAGTAACAGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGTAAGAGAAAGGACACTGTCAGTGGGACAAAACAGTAACAGC  948

seq1  TTGGGAAAGATCTTTACTAACCCTACATTGAATAGAGGGCTAATATCCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGATCTTTACTAACCCTACATTGAATAGAGGGCTAATATCCAA  998

seq1  AATACACAAAGAACTCACAAGTTAGACTCCAGAAAAACAAATAACCCAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACAAAGAACTCACAAGTTAGACTCCAGAAAAACAAATAACCCAAT  1048

seq1  TTAAAAATGGGGTACAGAGCTAAACAAAGAATTC  1072
      ||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGGGGTACAGAGCTAAACAAAGAATTC  1082