BAC Information

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BAC

Clone NameB6Ng01-161F14
Chromosome6 (Build37)2 (Build37)
Map Location 18,834,994 - 18,835,35478,088,628 - 78,089,642
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F14.bB6Ng01-161F14.g
ACCDH954483DH954484
length1,1331,005
definitionDH954483|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F14, 5' end.DH954484|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,834,994 - 18,835,354)(78,088,628 - 78,089,642)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttttttatatatgttggatattagtccc
ctatctgatttaggatagataaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctactggtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagattttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcatttgaatctgtagatcgcttttggcaagatagccatt
tttacaatgatccttccaatccatgagcatgggaaatctttccatcttct
gagttcttctttaatttctttctttcagagatttggaggtttttatcata
cagatctttcacttccttagttagaagtcattcccaagatatttatatta
tttgtgactatagccatttttacatgttgatcctgccaatccatgagcat
gggagatcttccatctccgagtcttctttaattcctttctcagagattga
aggttttaccaacagatctccacttccttagttagagtcattcaagatat
tgaataattggtgacattgagaagggtgttgtt
gaattccaaagagaaacagaagcagatagaacatccaagttgtcagttta
tgacaaagcaggtgagaaaaggatgctcaccatgtaggttgggtggtcat
aataaactatagttttgactgcttgctggatgacaccagttaatgtgtcc
attggtttggaagagtaagagctccagagacctggtatcttgtgttgctc
actagaagctcctggtccaccgtcatgaacgttgacaaggagctcatgag
agagactatagtggagttggactctactatcagcacctgagggcagaact
atctgtgacaattagttgatactggagaaaaatatcatgaaaccctttct
ctgcattcctatctgaagtaaaatcttgaagttgctaaggaatgtagagc
taatcacaatatctctaaagacaaaaaggaccttctgtgaagaaggttgt
cttacagaacatatttccatgctctggagaaggaaggcagtcatgtttcc
caaaggagcctgttccagaactaaacaatggtctgctaacatttgagaaa
atactagaaaaagtttcccaagttagcccaaataaagacagaacttgact
gccatcgaaaggagaccagatagtatagtatccacaatccacagctaaca
acaagtctaaagactaggtatggacaaggagaatggaaggctttcgtcat
tctcattatggacctgccactgatggacaaagagtgtttctccacaaggt
tagagaccacagcatagagataagccccttgcacctatgaaaagacggtg
acaaactagaaagcaggactggattgtgtcatcataacctcgctttaagc
catagcaatgttggccatactagagaagttgaagcttatgcatacttgaa
acaaagcctaaccccacttctgtgaccaaaataagaatttattttttagt
cactttaagtctttatgtgggaaccttcagggtaagtaaaattagagaaa
caaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18834994_18835354
seq2: B6Ng01-161F14.b_663_1180 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AACAACACCCTTCTCAATGTCACCAATTATTCAATATCTTGAATGACTCT  50

seq1  --------------------------------------------------  0
                                                        
seq2  AACTAAGGAAGTGGAGATCTGTTGGTAAAACCTTCAATCTCTGAGAAAGG  100

seq1  --------------------------------------------------  0
                                                        
seq2  AATTAAAGAAGACTCGGAGATGGAAGATCTCCCATGCTCATGGATTGGCA  150

seq1  --AACAAC----ACCCTTCTCAATAGCCACAAATAATATAAAATATCTT-  43
        | ||||    |    |  | |||| |||||||||||| ||||||||| 
seq2  GGATCAACATGTAAAAATGGCTATAGTCACAAATAATAT-AAATATCTTG  199

seq1  GGCGTGAC-TCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAA-CTTC  91
      ||  |||| |||||||||||||||||||||||||||||||||||| || |
seq2  GGAATGACTTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACCTCC  249

seq1  AAATCTCTG-AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAAATC  140
      ||||||||| |||||||||||||||||||| ||||||||||||||| || 
seq2  AAATCTCTGAAAGAAAGAAATTAAAGAAGAACTCAGAAGATGGAAAGATT  299

seq1  TCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTCTCTTG  190
      ||||||||||||||||||| |||||   |||||||||||||||| |||||
seq2  TCCCATGCTCATGGATTGGAAGGAT---CATTGTAAAAATGGCTATCTTG  346

seq1  CCAAAAGCAATCTGCAGATTC-AATGCAATCCCCATCAAAATTCCAACTC  239
      |||||||| |||| ||||||| ||||||||||||||||||||||||||||
seq2  CCAAAAGCGATCTACAGATTCAAATGCAATCCCCATCAAAATTCCAACTC  396

seq1  AATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  446

seq1  AAAAAACCTAGGATAGCAAAACCTCTTCTCAAGGATAAAAGAACCTCTGG  339
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AAAAAACCTAGGATAGCAAAAAATCTTCTCAAGGATAAAAGAACCTCTGG  496

seq1  TGGAATCACCATGCCTGACCTA  361
      ||||||||||||||||||||||
seq2  TGGAATCACCATGCCTGACCTA  518

seq1: chr2_78088628_78089642
seq2: B6Ng01-161F14.g_71_1075 (reverse)

seq1  TTTTGTTTCTTCTAATTTTTTACTTACCTGTAAATGTCCCACATAAAAGA  50
      ||||||||| |||||  |||||||||||   ||   |||||||| |||||
seq2  TTTTGTTTC-TCTAA--TTTTACTTACCCTGAAGGTTCCCACAT-AAAGA  46

seq1  CTTAAAAGTGACTAAAAAAT-AATTCTTATATTGGGTCACTAGAAGTGGG  99
      ||| |||||||||||||||| ||||||||| || |||||| |||||| ||
seq2  CTT-AAAGTGACTAAAAAATAAATTCTTAT-TTTGGTCAC-AGAAGT-GG  92

seq1  GGTTAGGCTTTGTTTTCAGTATGCATAAGCTTCAACTTCTCTAGTATTGG  149
      |||||||||||||||  ||||||||||||||||||||||||||||| |||
seq2  GGTTAGGCTTTGTTTCAAGTATGCATAAGCTTCAACTTCTCTAGTA-TGG  141

seq1  CCACCATTGCTATGGCTTAAAGCGAAGGTTATGATGACAC-ATTCAGTCC  198
      ||| |||||||||||||||||||| ||||||||||||||| || ||||||
seq2  CCAACATTGCTATGGCTTAAAGCG-AGGTTATGATGACACAATCCAGTCC  190

seq1  TGCTTTCTTAGTTTGTCACCTGTCCTTTCATAGGTGCATGGGGCTTATCT  248
      ||||||| |||||||||||| ||| ||||||||||||| |||||||||||
seq2  TGCTTTC-TAGTTTGTCACC-GTCTTTTCATAGGTGCAAGGGGCTTATCT  238

seq1  CTATGCTGTGGTCTCTTACCTTGTGGAGATACCACTCTTTGTCCATCAGT  298
      |||||||||||||||| |||||||||||| | ||||||||||||||||||
seq2  CTATGCTGTGGTCTCTAACCTTGTGGAGA-AACACTCTTTGTCCATCAGT  287

seq1  GGCAGGTCCATAATGAGAATGACGAAAGCCTTCCATTCTCCTTGTCCATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCCATAATGAGAATGACGAAAGCCTTCCATTCTCCTTGTCCATA  337

seq1  CCTAGTC-TTAGACTTGTTGTTAGCTGTGGATTGTGGATTCTATACTATC  397
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTAGTCTTTAGACTTGTTGTTAGCTGTGGATTGTGGATACTATACTATC  387

seq1  TGGTCTCCTTTCGATGGCAGTCAAGTTCTGTCTTTATTTGGGCTAACTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCTTTCGATGGCAGTCAAGTTCTGTCTTTATTTGGGCTAACTTG  437

seq1  GGAAACTTTTTCTAGTATTTTCTCAAATGTTAGCAGACCATTGTTTAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTTTTCTAGTATTTTCTCAAATGTTAGCAGACCATTGTTTAGTT  487

seq1  CTGGAACAGGCTCCTTTGGGAAACATGACTGCCTTCCTTCTCCAGAGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGGCTCCTTTGGGAAACATGACTGCCTTCCTTCTCCAGAGCAT  537

seq1  GGAAATATGTTCTGTAAGACAACCTTCTTCACAGAAGGTCCTTTTTGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGTTCTGTAAGACAACCTTCTTCACAGAAGGTCCTTTTTGTCT  587

seq1  TTAGAGATATTGTGATTAGCTCTACATTCCTTAGCAACTTCAAGATTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATATTGTGATTAGCTCTACATTCCTTAGCAACTTCAAGATTTTA  637

seq1  CTTCAGATAGGAATGCAGAGAAAGGGTTTCATGATATTTTTCTCCAGTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATAGGAATGCAGAGAAAGGGTTTCATGATATTTTTCTCCAGTAT  687

seq1  CAACTAATTGTCACAGATAGTTCTGCCCTCAGGTGCTGATAGTAGAGTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATTGTCACAGATAGTTCTGCCCTCAGGTGCTGATAGTAGAGTCC  737

seq1  AACTCCACTATAGTCTCTCTCATGAGCTCCTTGTCAACGTTCATGACGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACTATAGTCTCTCTCATGAGCTCCTTGTCAACGTTCATGACGGT  787

seq1  GGACCAGGAGCTTCTAGTGAGCAACACAAGATACCAGGTCTCTGGAGCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGAGCTTCTAGTGAGCAACACAAGATACCAGGTCTCTGGAGCTC  837

seq1  TTACTCTTCCAAACCAATGGACACATTAACTGGTGTCATCCAGCAAGCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTCCAAACCAATGGACACATTAACTGGTGTCATCCAGCAAGCAG  887

seq1  TCAAAACTATAGTTTATTATGACCACCCAACCTACATGGTGAGCATCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTATAGTTTATTATGACCACCCAACCTACATGGTGAGCATCCTT  937

seq1  TTCTCACCTGCTTTGTCATAAACTGACAACTTGGATGTTCTATCTGCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCTGCTTTGTCATAAACTGACAACTTGGATGTTCTATCTGCTTC  987

seq1  TGTTTCTCTTTGGAATTC  1015
      ||||||||||||||||||
seq2  TGTTTCTCTTTGGAATTC  1005