BAC Information

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BAC

Clone NameB6Ng01-161G03
Chromosome2 (Build37)
Map Location 165,164,902 - 165,342,702
singlet/doubletdoublet
Overlap geneGm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10
Upstream geneSlpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2
Downstream geneEya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G03.bB6Ng01-161G03.g
ACCDH954509DH954510
length1,076370
definitionDH954509|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G03, 5' end.DH954510|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,341,614 - 165,342,702)(165,164,902 - 165,165,277)
sequence
gaattctaccagggctaaggaccgttatcagagatgacctccgcgaggga
cctctaaagtctgtagaggcagaagccaggctctgtgagggcacctttct
ctctggcagccatgattaccctttccgtcagcctccccaagcagtggaat
cttccctaggctgagtctgtagggccaggctccagtcccctgacacctgg
attacatttccccatctatgacacagggctgaagataaggcagggctctc
aatgggtcctcccctctttcccctccttcccctttttgtcttcttcatcc
atcccacatagcaacgtctggagacagaggcaacagggagaagaaaggct
gggagaccatcacatgggtggcgtctctaaaatgtcctcacagtctcatg
agctagacttgtaaacacttgacaactggaagtagacaagtaacccagtc
ctaagaactactagggtgaaggagccctgggcatcagaagagcaggccat
tagctctaggaggggcaggtgatcttgttgagccaatgggagcagggctt
gggctatacctaatgagagagatgccccagaggcgtgctggccatccttg
ggggatagcaggcctgagagagaatgaagaacagaccctggagtggaaag
cccagtggctttgtttgaagccacccaccccgctcatttaggtgacctaa
gataaagcagtcctttccgattcacaagcgggcagcatccggtttcacgc
cgctgtgacctagtgaatttgggagctttagctctggagagaactgtccc
cggatccagctggacacggcctgggtgggttgtggtcatagtgctcaccg
atcaggtcgaggaaggagaggctgataaagaggttagctgcccagttgaa
gctgctgcagaatgcgaaggctctccctcgggttctcgctgggtagtttc
tcactgagactacaggttacttgagcgagagcagagagattctgggcacc
atgaactgacaggccacttcacctcgtaactgagacttggcattgctctt
gggccgattctctcagatgccaactt
tataggagaactcctcccttccagacacattgtctggttgttttctataa
gtgtctgttgaatgttccctatgtatgacccgggccaaacaccttcattt
tcaaattcacaggcagagtgtgtaagcagagaaatataaattgtgtgtgt
gtatgaatgtgcatacatgtgaatgtatggatgtgtttctgtttgtgtat
atgaatttgtgagtgaggggtgcaaacatggtgtatgtgtgagtgtgtgg
ctatacaagtgtataggtggttgtatgtgtgtgcagtggatgtgcatgcg
tttgtacagatgtgcatgactgtgtgtgtgtgctgagtcataataggact
ttaaatgcctcctctatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165341614_165342702
seq2: B6Ng01-161G03.b_49_1124 (reverse)

seq1  AAGTTGTGCATCTGAGAGAATCTGGGGCCAAGAGCATGACACAGGTCTCA  50
      |||||| |||||||||||||||  || |||||||||   | || ||||||
seq2  AAGTTG-GCATCTGAGAGAATC--GGCCCAAGAGCAATGC-CAAGTCTCA  46

seq1  GTTAACGAGGGTGGGAGGTGGCCTGTCCAGTTCATGGGTGCCCAGAATCT  100
      ||| |||||   | || ||||||||| |||||||| ||||||||||||||
seq2  GTT-ACGAG---GTGAAGTGGCCTGT-CAGTTCAT-GGTGCCCAGAATCT  90

seq1  CTCTTGCTCTCGCCTCCAGTAACCTGGTTGGTCCTCAGTGAG-ATCTACC  149
      ||| |||||||| ||| |||||||||  | || ||||||||| | |||||
seq2  CTC-TGCTCTCG-CTCAAGTAACCTG--TAGT-CTCAGTGAGAAACTACC  135

seq1  CAGCGGAGATCCGAGGGAGAGCCTTCGCCTTCTGCAGCAGCTTCAACTGG  199
      |||||   | |||||||||||||||||| |||||||||||||||||||||
seq2  CAGCGAGAACCCGAGGGAGAGCCTTCGCATTCTGCAGCAGCTTCAACTGG  185

seq1  GCAGCTAACCTCTTTATCAGCCTCTCCTTCCTCGACCTGATCGGTGAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAACCTCTTTATCAGCCTCTCCTTCCTCGACCTGATCGGTGAGCA  235

seq1  CTATGACCAC-ACCCACCCAGGCCGTGTCCAGCTGGATCCGGGGACAGTT  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCACAACCCACCCAGGCCGTGTCCAGCTGGATCCGGGGACAGTT  285

seq1  CTCTCCAGAGCTAAAGCTCCCAAATTCACTAGGTCACAGCGGCGTGAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAGCTAAAGCTCCCAAATTCACTAGGTCACAGCGGCGTGAAAC  335

seq1  CGGATGCTGCCCGCTTGTGAATCGGAAAGGACTGCTTTATCTTAGGTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGCTGCCCGCTTGTGAATCGGAAAGGACTGCTTTATCTTAGGTCAC  385

seq1  CTAAATGAGCGGGGTGGGTGGCTTCAAACAAAGCCACTGGGCTTTCCACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAGCGGGGTGGGTGGCTTCAAACAAAGCCACTGGGCTTTCCACT  435

seq1  CCAGGGTCTGTTCTTCATTCTCTCTCAGGCCTGCTATCCCCCAAGGATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTGTTCTTCATTCTCTCTCAGGCCTGCTATCCCCCAAGGATGG  485

seq1  CCAGCACGCCTCTGGGGCATCTCTCTCATTAGGTATAGCCCAAGCCCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACGCCTCTGGGGCATCTCTCTCATTAGGTATAGCCCAAGCCCTGC  535

seq1  TCCCATTGGCTCAACAAGATCACCTGCCCCTCCTAGAGCTAATGGCCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGGCTCAACAAGATCACCTGCCCCTCCTAGAGCTAATGGCCTGC  585

seq1  TCTTCTGATGCCCAGGGCTCCTTCACCCTAGTAGTTCTTAGGACTGGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATGCCCAGGGCTCCTTCACCCTAGTAGTTCTTAGGACTGGGTT  635

seq1  ACTTGTCTACTTCCAGTTGTCAAGTGTTTACAAGTCTAGCTCATGAGACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTACTTCCAGTTGTCAAGTGTTTACAAGTCTAGCTCATGAGACT  685

seq1  GTGAGGACATTTTAGAGACGCCACCCATGTGATGGTCTCCCAGCCTTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACATTTTAGAGACGCCACCCATGTGATGGTCTCCCAGCCTTTCT  735

seq1  TCTCCCTGTTGCCTCTGTCTCCAGACGTTGCTATGTGGGATGGATGAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTTGCCTCTGTCTCCAGACGTTGCTATGTGGGATGGATGAAGA  785

seq1  AGACAAAAAGGGGAAGGAGGGGAAAGAGGGGAGGACCCATTGAGAGCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGGGGAAGGAGGGGAAAGAGGGGAGGACCCATTGAGAGCCCT  835

seq1  GCCTTATCTTCAGCCCTGTGTCATAGATGGGGAAATGTAATCCAGGTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCTTCAGCCCTGTGTCATAGATGGGGAAATGTAATCCAGGTGTC  885

seq1  AGGGGACTGGAGCCTGGCCCTACAGACTCAGCCTAGGGAAGATTCCACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTGGAGCCTGGCCCTACAGACTCAGCCTAGGGAAGATTCCACTG  935

seq1  CTTGGGGAGGCTGACGGAAAGGGTAATCATGGCTGCCAGAGAGAAAGGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGAGGCTGACGGAAAGGGTAATCATGGCTGCCAGAGAGAAAGGTG  985

seq1  CCCTCACAGAGCCTGGCTTCTGCCTCTACAGACTTTAGAGGTCCCTCGCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAGAGCCTGGCTTCTGCCTCTACAGACTTTAGAGGTCCCTCGCG  1035

seq1  GAGGTCATCTCTGATAACGGTCCTTAGCCCTGGTAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATCTCTGATAACGGTCCTTAGCCCTGGTAGAATTC  1076

seq1: chr2_165164902_165165277
seq2: B6Ng01-161G03.g_67_442

seq1  GAATTCTATAGGAGAACTCCTCCCTTCCAGACACATTGTCTGGTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGGAGAACTCCTCCCTTCCAGACACATTGTCTGGTTGTTTT  50

seq1  CTATAAGTGTCTGTTGAATGTTCCCTATGTATGACCCGGGCCAAACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGTGTCTGTTGAATGTTCCCTATGTATGACCCGGGCCAAACACCT  100

seq1  TCATTTTCAAATTCACAGGCAGAGTGTGTAAGCAGAGAAATATAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAAATTCACAGGCAGAGTGTGTAAGCAGAGAAATATAAATTGT  150

seq1  GTGTGTGTATGAATGTGCATACATGTGAATGTATGGATGTGTTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGAATGTGCATACATGTGAATGTATGGATGTGTTTCTGTTT  200

seq1  GTGTATATGAATTTGTGAGTGAGGGGTGCAAACATGGTGTATGTGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGAATTTGTGAGTGAGGGGTGCAAACATGGTGTATGTGTGAGT  250

seq1  GTGTGGCTATACAAGTGTATAGGTGGTTGTATGTGTGTGCAGTGGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTATACAAGTGTATAGGTGGTTGTATGTGTGTGCAGTGGATGTG  300

seq1  CATGCGTTTGTACAGATGTGCATGACTGTGTGTGTGTGCTGAGTCAGAAG  350
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  CATGCGTTTGTACAGATGTGCATGACTGTGTGTGTGTGCTGAGTCATAAT  350

seq1  AGGACTTCAAATGCCTCCTCTATCAT  376
      ||||||| ||||||||||||||||||
seq2  AGGACTTTAAATGCCTCCTCTATCAT  376