BAC Information

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BAC

Clone NameB6Ng01-161H18
Chromosome2 (Build37)
Map Location 49,638,723 - 49,770,296
singlet/doubletdoublet
Overlap gene2310010M24Rik
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H18.bB6Ng01-161H18.g
ACCDH954582DH954583
length3831,139
definitionDH954582|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H18, 5' end.DH954583|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,638,723 - 49,639,111)(49,769,160 - 49,770,296)
sequence
tacacacatagactcaattaaaaaaaaaatgtaccaagagcagagtgtga
ttggtgcacacaccattaatcccagtacttaggaggctgaggcaggctga
tttctgcgagttctaggccagcctggtttatatagagagttccagggtag
ctaaagctatacagagggactttttctcaaccaaaaccaaaccatccaat
caaccaaccaaaccaaaagtacatagacatgacaaagtattaatgtatgc
acgaatctaaaaggtaaatgtatcctagggctcatttaaaaaagattccg
tccctatttagataccttctctgtccatccatactttactgtttgtgtgt
gtgtttgagtgtgtgtgtgtgtgtttgagtgtg
gaattcaacaccaggccaaaatgtaaacttatacgctttggtttgtagaa
tgaacaagtaaactcagaatggccaaggcttcacctgacagagattcact
tggatgaatgttatagataactggcaaacaccatgtcttcttaacatcca
gaaatgcacaaatgagtctcatctttagaacatctcagtaaagcacaatt
atgctcatgaatatcttagggtctctagagaaatagtaccaaccacacac
acgaaggagagggattttgtacacatataaatcagccatcttcaatatga
agacttgggaatttggttgtgtagttcaaaggcctgacagctcaaggctg
tgtaaatgccagtctgagcttacagtcccttaacataagggtcactaggg
ccagacactgttgcctcatggtggccaagcagagggaggagaatccaaac
ttccattaccttctgttttatttggaccttcaatggatggaatggtgcgc
atcttggggaggagcagctactaaattacaaacaccctcaccatcacatt
gagaagtaatgtctaaccagctctttgagaatctcagaccactcatggct
ggttcagagacccgaaaaaccagctatccagattgcaatactgaatctga
cagatgacgcatcaacaacgtagccttgagaacctgtctttagtcagggt
ctctattactgcacaaacatcatgaccaagaagcaagttggggaggaaag
ggtttattcggcttacacttccatgatgctgttcatcaccaaaggaaatc
agtactggaactcaagcaggtcagaaagcaggagctgatgcagaggccat
gagggatgttctgtactggcttgcctcacctgggcttgctctcagcctgc
tctcttatagaacccaagactacaagccagaagatgtttcacccacaggc
ctttcccccttgatcactattgagaaattgccttacagtggatcttcatg
gaggcatttcctcaactgaagatcctttctctggtgatactccagcttgt
gtcaagtgaccaaaactagccagtatagactacaagacaggtcctccctc
caaaatcaactgggtcaaaatctgctctggcttctgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49638723_49639111
seq2: B6Ng01-161H18.b_47_435

seq1  GAATTCTACACACATAGACTCAATTAAAAAAAAAATGTACCAAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACACATAGACTCAATTAAAAAAAAAATGTACCAAGAGCAGA  50

seq1  GTGTGATTGGTGCACACACCATTAATCCCAGTACTTAGGAGGCTGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTGGTGCACACACCATTAATCCCAGTACTTAGGAGGCTGAGGCA  100

seq1  GGCTGATTTCTGCGAGTTCTAGGCCAGCCTGGTTTATATAGAGAGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTTCTGCGAGTTCTAGGCCAGCCTGGTTTATATAGAGAGTTCCA  150

seq1  GGGTAGCTAAAGCTATACAGAGGGACTTTTTCTCAACCAAAACCAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTAAAGCTATACAGAGGGACTTTTTCTCAACCAAAACCAAACCA  200

seq1  TCCAATCAACCAACCAAACCAAAAGTACATAGACATGACAAAGTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAACCAACCAAACCAAAAGTACATAGACATGACAAAGTATTAAT  250

seq1  GTATGCACGAATCTAAAAGGTAAATGTATCCTAGGGCTCATTTAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACGAATCTAAAAGGTAAATGTATCCTAGGGCTCATTTAAAAAAG  300

seq1  ATTCCGTCCCTATTTAGATACCTTCTCTGTCCATCCATACTTTACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGTCCCTATTTAGATACCTTCTCTGTCCATCCATACTTTACTGTTT  350

seq1  GTGTGTGTGTTTGAGTGTGTGTGTGTGTGTTTGAGTGTG  389
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTTGAGTGTGTGTGTGTGTGTTTGAGTGTG  389

seq1: chr2_49769160_49770296
seq2: B6Ng01-161H18.g_79_1205 (reverse)

seq1  GGTCAGAAGCCAGAGCAGATCTTGACCACAGGTATGGATTTGTGAGGGAG  50
      |||||||||||||||||||| |||||| |||   | |||||  |||||||
seq2  GGTCAGAAGCCAGAGCAGATTTTGACC-CAG---TTGATTTTGGAGGGAG  46

seq1  ACCTTGTCTTGTTAGGCTCTGTACTGGCTAGTTTTGTGTCAACTTGACAC  100
        | ||||||| |||  ||| ||||||||||||||| ||| |||||||||
seq2  GACCTGTCTTG-TAG--TCTATACTGGCTAGTTTTG-GTC-ACTTGACAC  91

seq1  -AGCTGGAGTTATCA-CAGAGAAAGGATCTTCAGTTGAGGAAATGCCTCC  148
       |||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAG-TATCACCAGAGAAAGGATCTTCAGTTGAGGAAATGCCTCC  140

seq1  ATG-AGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAA  197
      ||| |||||| ||||||||||| |||||||| ||||||||||||||||||
seq2  ATGAAGATCC-ACTGTAAGGCAATTTCTCAA-TAGTGATCAAGGGGGAAA  188

seq1  GGCCCCTTGTGGGTGGAACCATCTCTGGGCTGGTAGTCTTGGGTTCTATA  247
      ||||   ||||||| ||| |||||   |||| ||||||||||||||||||
seq2  GGCC---TGTGGGT-GAAACATCTTCTGGCTTGTAGTCTTGGGTTCTATA  234

seq1  AGAGAGCAGGCT--GAGCAAG-CCAGGTGAGGCAAGCCAGTACAGAACAT  294
      ||||||||||||  ||||||| ||||||||||||||||||||||||||||
seq2  AGAGAGCAGGCTGAGAGCAAGCCCAGGTGAGGCAAGCCAGTACAGAACAT  284

seq1  CCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCC  344
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCT-CATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCC  333

seq1  AGTACTGATTTCCTTTGGTGATGAACAGCATCATGGAAGTGTAAGCCGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGATTTCCTTTGGTGATGAACAGCATCATGGAAGTGTAAGCCGAA  383

seq1  TAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGTA  433

seq1  ATAGAGACCCTGACT-AAGACAGGTTCTCAAGGCTACGTTGTTGATGCGT  493
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGAGACCCTGACTAAAGACAGGTTCTCAAGGCTACGTTGTTGATGCGT  483

seq1  CATCTGTCAGATTCAGTATTGCAATCTGGATAGCTGGTTTTTCGGGTCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCAGATTCAGTATTGCAATCTGGATAGCTGGTTTTTCGGGTCTC  533

seq1  TGAACCAGCCATGAGTGGTCTGAGATTCTCAAAGAGCTGGTTAGACATTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGCCATGAGTGGTCTGAGATTCTCAAAGAGCTGGTTAGACATTA  583

seq1  CTTCTCAATGTGATGGTGAGGGTGTTTGTAATTTAGTAGCTGCTCCTCCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAATGTGATGGTGAGGGTGTTTGTAATTTAGTAGCTGCTCCTCCC  633

seq1  CAAGATGCGCACCATTCCATCCATTGAAGGTCCAAATAAAACAGAAGGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCGCACCATTCCATCCATTGAAGGTCCAAATAAAACAGAAGGTA  683

seq1  ATGGAAGTTTGGATTCTCCTCCCTCTGCTTGGCCACCATGAGGCAACAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTTTGGATTCTCCTCCCTCTGCTTGGCCACCATGAGGCAACAGT  733

seq1  GTCTGGCCCTAGTGACCCTTATGTTAAGGGACTGTAAGCTCAGACTGGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCCTAGTGACCCTTATGTTAAGGGACTGTAAGCTCAGACTGGCA  783

seq1  TTTACACAGCCTTGAGCTGTCAGGCCTTTGAACTACACAACCAAATTCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAGCCTTGAGCTGTCAGGCCTTTGAACTACACAACCAAATTCCC  833

seq1  AAGTCTTCATATTGAAGATGGCTGATTTATATGTGTACAAAATCCCTCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATATTGAAGATGGCTGATTTATATGTGTACAAAATCCCTCTC  883

seq1  CTTCGTGTGTGTGGTTGGTACTATTTCTCTAGAGACCCTAAGATATTCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGTGTGTGGTTGGTACTATTTCTCTAGAGACCCTAAGATATTCAT  933

seq1  GAGCATAATTGTGCTTTACTGAGATGTTCTAAAGATGAGACTCATTTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAATTGTGCTTTACTGAGATGTTCTAAAGATGAGACTCATTTGTG  983

seq1  CATTTCTGGATGTTAAGAAGACATGGTGTTTGCCAGTTATCTATAACATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGATGTTAAGAAGACATGGTGTTTGCCAGTTATCTATAACATT  1033

seq1  CATCCAAGTGAATCTCTGTCAGGTGAAGCCTTGGCCATTCTGAGTTTACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTGAATCTCTGTCAGGTGAAGCCTTGGCCATTCTGAGTTTACT  1083

seq1  TGTTCATTCTACAAACCAAAGCGTATAAGTTTACATTTTGGCCT  1137
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTCTACAAACCAAAGCGTATAAGTTTACATTTTGGCCT  1127