BAC Information

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BAC

Clone NameB6Ng01-161N07
Chromosome2 (Build37)
Map Location 79,948,543 - 80,075,357
singlet/doubletdoublet
Overlap genePde1a, LOC668005
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161N07.bB6Ng01-161N07.g
ACCDH954835DH954836
length1,064860
definitionDH954835|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N07, 5' end.DH954836|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,948,543 - 79,949,611)(80,074,495 - 80,075,357)
sequence
gaattccattttggaaaatttttagtcactaatcctccataatcccttta
atccatgttacaattttggctggctggattattatttagaataaataata
tgcaattaaaaataatttttcctaattgaaatacgattcatatgacagga
tgaagccagagggaaaagtgtcaactgccaacataaactgttggcttcag
tttgtgccttgtcagacactttgcctttgaattcctgatagagtgtaatt
caggaactattaaaattcctcagtcactttaggaaactcaagatgatgtt
ggtttgcagctattaacttttttatgagaagaaacctgagaggtaaggat
gagtcttccactcaacctgtagacaagaagctgtcaactgaaaactacca
ctgatggattcagttccatttcccccaagtttaaccaggttatcttctgc
ctgactccttgaggttggcaactctactgggcaattatctcttctctacc
acaagaccacaacactaactgtgaaagatattgtcaccaggatcctaggt
attcaataatatcttaaaagaatatttggattttgctggttagtttaata
agtcatgtttgtcttctctttgcattctacccataagatcatattcagta
gttagcttttcatctccgtcttgtatctgaaagaagaagggagctaaagc
aggcacattgccttacgtacagctgtgccaaacatccctcacattgacaa
ctaccattttcagatattctgtgctactcacagcataggagcacttcagt
cgcaccattcctatcttttacaaccatttctgtttgacaataccttgggg
ttctgttatttgtctgtgctagtgtatcatccccgatcatctttgactag
tgaggcttttctagcccttcattctcttcctcgctacagagtccacacac
ttgacctttcagccataacccatgtcacttctcatgtcatgccgttcagc
tgggagcaatgttggatcctgctttatgctatctgctggtgccagcaccc
agacgtaataggag
gaattcagctctcttttagctcatttggcttggaaatgtttcgaggaagg
agctctgggtgagagaaaggaattctctctctgggcttgcaggaagcaca
gagaagcagctggcaggacacaggtagaacagtattctagggaagagagc
taaggagctctctgaggtttggaagagctcaagagaaagacaggatgacg
cagataggaagagattcctaaagagatggcaggttagttgtcagatcagg
cttgtaaattgatattttgtatatagttaataaagctacctcctctgcac
tagcagatttttaccctagttcccacttcctgtgtccttattggtataaa
tattacataaattaaaattttatatattacacgttacaaccgtccattgt
ttgtttatatgcctctatggaaaaacatgtttttgcttcttgtccttatg
attgaacactttcctcatgtgactcctcttaacccgcagagtgtaagttg
tctgaatctctgaataaagttggccattgtgtgagactttaaaaaaacaa
agaaaggcaaattagtgagggcttatatatttaagataatttgagatagt
tctattataccatgaacttgattcttttcttttttttttggtttggtttt
ttcggtttggttttttcgagacagggtttctctgtatagccctggctgtc
ctgaaactcactttgtagaccaggctggcctcgaactcagaaatccgcct
gcctctgcctccctagtgctgggattaaaggcgtgcgccaccaccgcccg
gcgattctttcttaaagtcatgtatatatgtgtgtgttatgtctgtgtta
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79948543_79949611
seq2: B6Ng01-161N07.b_47_1110

seq1  GAATTCCATTTTGGAAAATTTTTAGTCACTAATCCTCCATAATCCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGGAAAATTTTTAGTCACTAATCCTCCATAATCCCTTTA  50

seq1  ATCCATGTTACAATTTTGGCTGGCTGGATTATTATTTAGAATAAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTTACAATTTTGGCTGGCTGGATTATTATTTAGAATAAATAATA  100

seq1  TGCAATTAAAAATAATTTTTCCTAATTGAAATACGATTCATATGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAAAAATAATTTTTCCTAATTGAAATACGATTCATATGACAGGA  150

seq1  TGAAGCCAGAGGGAAAAGTGTCAACTGCCAACATAAACTGTTGGCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGAGGGAAAAGTGTCAACTGCCAACATAAACTGTTGGCTTCAG  200

seq1  TTTGTGCCTTGTCAGACACTTTGCCTTTGAATTCCTGATAGAGTGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTTGTCAGACACTTTGCCTTTGAATTCCTGATAGAGTGTAATT  250

seq1  CAGGAACTATTAAAATTCCTCAGTCACTTTAGGAAACTCAAGATGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTATTAAAATTCCTCAGTCACTTTAGGAAACTCAAGATGATGTT  300

seq1  GGTTTGCAGCTATTAACTTTTTTATGAGAAGAAACCTGAGAGGTAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAGCTATTAACTTTTTTATGAGAAGAAACCTGAGAGGTAAGGAT  350

seq1  GAGTCTTCCACTCAACCTGTAGACAAGAAGCTGTCAACTGAAAACTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCCACTCAACCTGTAGACAAGAAGCTGTCAACTGAAAACTACCA  400

seq1  CTGATGGATTCAGTTCCATTTCCCCCAAGTTTAACCAGGTTATCTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGATTCAGTTCCATTTCCCCCAAGTTTAACCAGGTTATCTTCTGC  450

seq1  CTGACTCCTTGAGGTTGGCAACTCTACTGGGCAATTATCTCTTCTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCTTGAGGTTGGCAACTCTACTGGGCAATTATCTCTTCTCTACC  500

seq1  ACAAGACCACAACACTAACTGTGAAAGATATTGTCACCAGGATCCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCACAACACTAACTGTGAAAGATATTGTCACCAGGATCCTAGGT  550

seq1  ATTCAATAATATCTTAAAAGAATATTTGGATTTTGCTGGTTAGTTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAATATCTTAAAAGAATATTTGGATTTTGCTGGTTAGTTTAATA  600

seq1  AGTCATGTTTGTCTTCTCTTTGCATTCTACCCATAAGATCATATTCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTTGTCTTCTCTTTGCATTCTACCCATAAGATCATATTCAGTA  650

seq1  GTTAGCTTTTCATCTCCGTCTTGTATCTGAAAGAAGAAGGGAGCTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTTTCATCTCCGTCTTGTATCTGAAAGAAGAAGGGAGCTAAAGC  700

seq1  AGGCACATTGCCTTACGTACAGCTGTGCCAAACATCCCTCACATTGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATTGCCTTACGTACAGCTGTGCCAAACATCCCTCACATTGACAA  750

seq1  CTACCATTTTCAGATATTCTGTGCTACTCACAGCATAGGAGCACTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTTTCAGATATTCTGTGCTACTCACAGCATAGGAGCACTTCAGT  800

seq1  CGCACCATTCCTATCTTTTACAACCATTTCTGTTTGACAATACCTTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCATTCCTATCTTTTACAACCATTTCTGTTTGACAATACCTTGGGG  850

seq1  TTCTGTTATTTTGTCTGTGCTAGTGTATCATCCCCGATCATCTTTGACTA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTA-TTTGTCTGTGCTAGTGTATCATCCCCGATCATCTTTGACTA  899

seq1  GTGAGGCTTTTCTAGCCCTTCATTCTCTTCCTCGCTACAGAGTCCACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTTTTCTAGCCCTTCATTCTCTTCCTCGCTACAGAGTCCACACA  949

seq1  CTTGACCTTTCAGCCATAACTCATGTCACTTCTCATGTCATGCCGTTCAG  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTGACCTTTCAGCCATAACCCATGTCACTTCTCATGTCATGCCGTTCAG  999

seq1  CTGGGAAGCAATGTTGGATTCCTGCTTTATGCTATCTGCT-GTGCCAGGC  1049
      ||||| |||||||||||| ||||||||||||||||||||| |||||| ||
seq2  CTGGG-AGCAATGTTGGA-TCCTGCTTTATGCTATCTGCTGGTGCCA-GC  1046

seq1  ACCCAGGACGTAATAAGGAG  1069
      ||||| |||||||| |||||
seq2  ACCCA-GACGTAAT-AGGAG  1064

seq1: chr2_80074495_80075357
seq2: B6Ng01-161N07.g_67_926 (reverse)

seq1  CACACACACATAAACACAGACATAAACACACACATATATACATGACTTTA  50
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CACACACACAT-AACACAGACAT-AACACACACATATATACATGACTTTA  48

seq1  AGAAAAGAATCGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTT  100
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AG-AAAGAATCGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTA  97

seq1  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  147

seq1  AAGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA  197

seq1  AAACCAAACCGAAAAAACCAAACCAAAAAAAAAAGAAAAGAATCAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCGAAAAAACCAAACCAAAAAAAAAAGAAAAGAATCAAGTTC  247

seq1  ATGGTATAATAGAACTATCTCAAATTATCTTAAATATATAAGCCCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATAATAGAACTATCTCAAATTATCTTAAATATATAAGCCCTCACT  297

seq1  AATTTGCCTTTCTTTGTTTTTTTAAAGTCTCACACAATGGCCAACTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTTTCTTTGTTTTTTTAAAGTCTCACACAATGGCCAACTTTAT  347

seq1  TCAGAGATTCAGACAACTTACACTCTGCGGGTTAAGAGGAGTCACATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTCAGACAACTTACACTCTGCGGGTTAAGAGGAGTCACATGAG  397

seq1  GAAAGTGTTCAATCATAAGGACAAGAAGCAAAAACATGTTTTTCCATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTTCAATCATAAGGACAAGAAGCAAAAACATGTTTTTCCATAGA  447

seq1  GGCATATAAACAAACAATGGACGGTTGTAACGTGTAATATATAAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAACAAACAATGGACGGTTGTAACGTGTAATATATAAAATTTT  497

seq1  AATTTATGTAATATTTATACCAATAAGGACACAGGAAGTGGGAACTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTAATATTTATACCAATAAGGACACAGGAAGTGGGAACTAGGG  547

seq1  TAAAAATCTGCTAGTGCAGAGGAGGTAGCTTTATTAACTATATACAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTGCTAGTGCAGAGGAGGTAGCTTTATTAACTATATACAAAAT  597

seq1  ATCAATTTACAAGCCTGATCTGACAACTAACCTGCCATCTCTTTAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTACAAGCCTGATCTGACAACTAACCTGCCATCTCTTTAGGAAT  647

seq1  CTCTTCCTATCTGCGTCATCCTGTCTTTCTCTTGAGCTCTTCCAAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTATCTGCGTCATCCTGTCTTTCTCTTGAGCTCTTCCAAACCTC  697

seq1  AGAGAGCTCCTTAGCTCTCTTCCCTAGAATACTGTTCTACCTGTGTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCCTTAGCTCTCTTCCCTAGAATACTGTTCTACCTGTGTCCTG  747

seq1  CCAGCTGCTTCTCTGTGCTTCCTGCAAGCCCAGAGAGAGAATTCCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTTCTCTGTGCTTCCTGCAAGCCCAGAGAGAGAATTCCTTTCT  797

seq1  CTCACCCAGAGCTCCTTCCTCGAAACATTTCCAAGCCAAATGAGCTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAGAGCTCCTTCCTCGAAACATTTCCAAGCCAAATGAGCTAAAA  847

seq1  GAGAGCTGAATTC  863
      |||||||||||||
seq2  GAGAGCTGAATTC  860