BAC Information

Click to search

BAC

Clone NameB6Ng01-162A03
Chromosome2 (Build37)
Map Location 169,659,571 - 169,785,270
singlet/doubletdoublet
Overlap geneTshz2, LOC100043737
Upstream geneZfp64, LOC100043909, EG668954
Downstream geneLOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A03.bB6Ng01-162A03.g
ACCDH954961DH954962
length1,114773
definitionDH954961|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A03, 5' end.DH954962|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,659,571 - 169,660,691)(169,784,498 - 169,785,270)
sequence
gaattctcttttctcaataatatgtgtggagtatccagacatgtctgcag
gtcctattcaaagccagtcaacctggaagcatgttgagactctacaacta
acatctattttcaaaaccttaagactaagaccccacccagtgaagcactt
aatcagcttgtcacgtcggatgtaaagccaggaggcccagctatagcttg
actgacctccctagcctcttacctaaaggaccctgagttacaggcgagac
cctggaaaggtaaagaaaacatcactggattgatagagtccgccactctg
tatctgacctgagcgcactggtgtgagccttcctttgtgatgtctgtgcc
aaagcactaagggagaattactcacctttcaaacaaacagagagagagac
agagacagagacagagacagagacagagagacaaagacagagagacagag
agaaagagacacagagagatctcactcacaaggatgagttcagaattttc
aggctgaattttaggtaattcgagcacacttgaggtccaaatggcacgag
attttttgcacaccagtttcatacacacaaattaagccataggtttgtca
atttcagtaaaatatccaagttgcctacaccaactcactgtccagaggcc
agaaagcagccttttgtcctctttgcctggaacttcctttgtgctccgag
ggctctgagtgtgtgtgtccagcacagatgagtgcccttcctctctgcct
cccctctccgtctccacaaccctccctccctccagccccacccccttccc
ctgtctgctttgtcgagcaacagtgtgactttgtctttgacattaaacag
ttgtatatacttttagccggcttttgtttactccatctgtatttccaatc
agcgaggaaaggttaccaagcggttcattactgatttatttatgatgtat
ttagatagcaaacacggaactgtcagcagtctctggctaacacttgtgac
agacattaataacatattggtatagcaatggattacgatctttaatgttt
gtggaaatttacatctcaacgtgtatttgggagggggggttgcgtttctt
gaaggagtacaaga
gaattccaaggaaattgacaagggatgttcagtcaggagttctgctggag
cctgggatgggctattaattcctggctctcttaggtgtctcattttctga
gcttcatttaatgtttaagatcacctggggcccagcctgttagagaatgg
aggcccaggaaacggactcaggagccagctctgatttgatgcagcccctg
cctcacctcgctgtgagagcaggtgggaggggagggaagagggctgccgg
gacgcttcctcccagcctgcctggcccttgtcagcaccaccattgatatt
aaaatcaagggttggcacagagcgactggtatggctggcagaattccaga
ctggctctaatgagcctcacctgggctaattacttttctttttttctttt
cttttttttttttttttttgcacaccctgccaggcaggttggagttgcca
actggtcaaacagaatgattgctgatggcgcgcgggattgctcataggaa
tagtaggactggggacttgggcaactccctcatgtggccactgaaccaga
aagaaatgaaaaatgtggagtcagggtggtatctagcgccccctacccta
aatatgtatgcatctgccggtctgagagaaatgcggacttccaagtatgg
tggtttgattgaggaatgtccctcgtgggctcagctatttgagcatttgg
tctccacttggtgacactgctctaggagggagtgggacttctaggacgtg
gtatttgggggtaggaagaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169659571_169660691
seq2: B6Ng01-162A03.b_45_1158

seq1  GAATTCTCTTTTCTCAATAATATGTGTGGAGTATCCAGACATGTCTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTCTCAATAATATGTGTGGAGTATCCAGACATGTCTGCAG  50

seq1  GTCCTATTCAAAGCCAGTCAACCTGGAAGCATGTTGAGACTCTACAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATTCAAAGCCAGTCAACCTGGAAGCATGTTGAGACTCTACAACTA  100

seq1  ACATCTATTTTCAAAACCTTAAGACTAAGACCCCACCCAGTGAAGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTTTCAAAACCTTAAGACTAAGACCCCACCCAGTGAAGCACTT  150

seq1  AATCAGCTTGTCACGTCGGATGTAAAGCCAGGAGGCCCAGCTATAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTTGTCACGTCGGATGTAAAGCCAGGAGGCCCAGCTATAGCTTG  200

seq1  ACTGACCTCCCTAGCCTCTTACCTAAAGGACCCTGAGTTACAGGCGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCCCTAGCCTCTTACCTAAAGGACCCTGAGTTACAGGCGAGAC  250

seq1  CCTGGAAAGGTAAAGAAAACATCACTGGATTGATAGAGTCCGCCACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGGTAAAGAAAACATCACTGGATTGATAGAGTCCGCCACTCTG  300

seq1  TATCTGACCTGAGCGCACTGGTGTGAGCCTTCCTTTGTGATGTCTGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCTGAGCGCACTGGTGTGAGCCTTCCTTTGTGATGTCTGTGCC  350

seq1  AAAGCACTAAGGGAGAATTACTCACCTTTCAAACAAACAGAGAGAGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTAAGGGAGAATTACTCACCTTTCAAACAAACAGAGAGAGAGAC  400

seq1  AGAGACAGAGACAGAGACAGAGACAGAGAGACAAAGACAGAGAGACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGACAGAGAGACAAAGACAGAGAGACAGAG  450

seq1  AGAAAGAGACACAGAGAGATCTCACTCACAAGGATGAGTTCAGAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGACACAGAGAGATCTCACTCACAAGGATGAGTTCAGAATTTTC  500

seq1  AGGCTGAATTTTAGGTAATTCGAGCACACTTGAGGTCCAAATGGCACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAATTTTAGGTAATTCGAGCACACTTGAGGTCCAAATGGCACGAG  550

seq1  ATTTTTTGCACACCAGTTTCATACACACAAATTAAGCCATAGGTTTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGCACACCAGTTTCATACACACAAATTAAGCCATAGGTTTGTCA  600

seq1  ATTTCAGTAAAATATCCAAGTTGCCTACACCAACTCACTGTCCAGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTAAAATATCCAAGTTGCCTACACCAACTCACTGTCCAGAGGCC  650

seq1  AGAAAGCAGCCTTTTGTCCTCTTTGCCTGGAACTTCCTTTGTGCTCCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGCCTTTTGTCCTCTTTGCCTGGAACTTCCTTTGTGCTCCGAG  700

seq1  GGCTCTGAGTGTGTGTGTCCAGCACAGATGAGTGCCCTTCCTCTCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGTGTGTGTGTCCAGCACAGATGAGTGCCCTTCCTCTCTGCCT  750

seq1  CCCCTCTCCGTCTCCACAACCCTCCCTCCCTCCAGCCCCACCCCCTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCGTCTCCACAACCCTCCCTCCCTCCAGCCCCACCCCCTTCCC  800

seq1  CTGTCTGCTTTGTCGAGCAACAGTGTGACTTTGTCTTTGACATTAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTTTGTCGAGCAACAGTGTGACTTTGTCTTTGACATTAAACAG  850

seq1  TTGTATATACTTTTAGCCGGCTTTTGTTTACTCCATCTGTATTTCCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATACTTTTAGCCGGCTTTTGTTTACTCCATCTGTATTTCCAATC  900

seq1  AGCGAGGAAGGTTTACCAAGCGGTTCATTACTGATTTATTTATGATGTAT  950
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGAAAGGTTACCAAGCGGTTCATTACTGATTTATTTATGATGTAT  950

seq1  TTAGATAGCAAACACGGAACTGTCAGCAGTCTCTGGCTAAACACTGTTGA  1000
      |||||||||||||||||||||||||||||||||||||| ||||||  |||
seq2  TTAGATAGCAAACACGGAACTGTCAGCAGTCTCTGGCT-AACACTTGTGA  999

seq1  CAGACATTAATAACATA-TGGTATAGCAATGGAATTACGATCTTTAATGT  1049
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CAGACATTAATAACATATTGGTATAGCAATGG-ATTACGATCTTTAATGT  1048

seq1  TTGTGGAAATTTACATCCTCAACGTGTAATTTGGGGAGGGGGGGTGCGTT  1099
      |||||||||||||||| |||||||||| |||||||  |||||| ||||||
seq2  TTGTGGAAATTTACAT-CTCAACGTGT-ATTTGGGAGGGGGGGTTGCGTT  1096

seq1  TCTTAGGTAGGTAGGTACAAGA  1121
      ||||  | |||   ||||||||
seq2  TCTT--GAAGG--AGTACAAGA  1114

seq1: chr2_169784498_169785270
seq2: B6Ng01-162A03.g_69_841 (reverse)

seq1  AGTTACTTCCTCCCCCAAGATACCACGTCCTAGAAGTCCCACACCCTCCT  50
      |||| |||||| |||| | ||||||||||||||||||||||| |||||||
seq2  AGTTTCTTCCTACCCCCAAATACCACGTCCTAGAAGTCCCACTCCCTCCT  50

seq1  AGAGCAGTGTCACCAAGTGGAGACCAACTGCTCAAATAGCTGAGCCCACG  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGCAGTGTCACCAAGTGGAGACCAAATGCTCAAATAGCTGAGCCCACG  100

seq1  AGGGACATTCCTCAATCAAACCACCATACCTGGAAGTCCGCATTTCTCTC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGGACATTCCTCAATCAAACCACCATACTTGGAAGTCCGCATTTCTCTC  150

seq1  AGACCGGCAGATGCATACATACTTAGGGTAGGGGGCGCTAGATACCACCC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGACCGGCAGATGCATACATATTTAGGGTAGGGGGCGCTAGATACCACCC  200

seq1  TGACTCCACATTTTTCATTTCTTTCTGGTTCAGTGGCCACATGAGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCACATTTTTCATTTCTTTCTGGTTCAGTGGCCACATGAGGGAGT  250

seq1  TGCCCAAGTCCCCAGTCCTTCTATTCCTCTGAGCAATCCCGCGCGCCATC  300
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TGCCCAAGTCCCCAGTCCTACTATTCCTATGAGCAATCCCGCGCGCCATC  300

seq1  AGCAATCATTCTGTTTGACCAGTTGGCAACTCCAACCTGCCTGGCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCATTCTGTTTGACCAGTTGGCAACTCCAACCTGCCTGGCAGGGT  350

seq1  GTGCAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAGTAATTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAGTAATTAGCC  400

seq1  CAGGTGAGGCTCATTAGAGCCAGTCTGGAATTCTGCCAGCCATACCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGGCTCATTAGAGCCAGTCTGGAATTCTGCCAGCCATACCAGTC  450

seq1  GCTCTGTGCCAACCCTTGATTTTAATATCAATGGTGGTGCTGACAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGCCAACCCTTGATTTTAATATCAATGGTGGTGCTGACAAGGGC  500

seq1  CAGGCAGGCTGGGAGGAAGCGTCCCGGCAGCCCTCTTCCCTCCCCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCTGGGAGGAAGCGTCCCGGCAGCCCTCTTCCCTCCCCTCCCA  550

seq1  CCTGCTCTCACAGCGAGGTGAGGCAGGGGCTGCATCAAATCAGAGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTCACAGCGAGGTGAGGCAGGGGCTGCATCAAATCAGAGCTGGC  600

seq1  TCCTGAGTCCGTTTCCTGGGCCTCCATTCTCTAACAGGCTGGGCCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTCCGTTTCCTGGGCCTCCATTCTCTAACAGGCTGGGCCCCAGG  650

seq1  TGATCTTAAACATTAAATGAAGCTCAGAAAATGAGACACCTAAGAGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAAACATTAAATGAAGCTCAGAAAATGAGACACCTAAGAGAGCC  700

seq1  AGGAATTAATAGCCCATCCCAGGCTCCAGCAGAACTCCTGACTGAACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAATAGCCCATCCCAGGCTCCAGCAGAACTCCTGACTGAACATC  750

seq1  CCTTGTCAATTTCCTTGGAATTC  773
      |||||||||||||||||||||||
seq2  CCTTGTCAATTTCCTTGGAATTC  773