BAC Information

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BAC

Clone NameB6Ng01-162G15
Chromosome2 (Build37)
Map Location 174,181,665 - 174,258,506
singlet/doubletdoublet
Overlap geneTh1l, Ctsz
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas
Downstream geneRpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G15.bB6Ng01-162G15.g
ACCDH955258DH955259
length1,0631,021
definitionDH955258|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G15, 5' end.DH955259|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,257,462 - 174,258,506)(174,181,665 - 174,182,665)
sequence
gaattctctgctgtaattgggtgtcctttgttctggatgagcaaacccag
cagggaccagagatcccaccagggggacagacacagggtggagggaaggc
aatggactgctttatggaataacccaggggccttatcccttttccttcat
tcccaaactggcgagtgacatccagctgaggttaggtccctttgaccttc
actggtggttagggtcatcaggaccactgaccagtttcctcttcccagag
ccactatgttcctggtgcaactcacgctgggactggtgcctggggggtgg
ggatgactaattaagttgatgatgtaatccttaaggagtttactgaccca
gggaaggatctaaatagatgattgttaagtacaggtcagcctcggtgtct
tccttagtctctttccaccttgctctctctctctgagcctaaagtgcatc
cagtttgctagcctggctggcaagcagacttcagagacccactagtcttc
accccccggggctgggaccacagacaggtggcatcatgctgactttctgt
gggtgctaaggatctgagcgctggtcctgcaacagctctttactacctga
ctagtttccccagccttaaacctgattcttttcttccttcattttttatt
ttttattttattattattattttatttatttatttattggttttgttttg
tttttttgagacacgttttctctgtgtagccctggctgtcctggaatttc
acttttgtagaccaggctggcctcgaactcagaaatcctcagaaatccgc
ctgcctctgtctccagagtgctgggattaaggcatgtgtgctaccacgcc
ctgccccattttttacttttaaaaacaaactacaaagtattcagcaacag
tgatatattgtagaatcgcaacatacaatgttaaaaagcaagttcctttc
ttttttctccccccttccccccttcacttcgaattccacctgcctctgcc
tcctaatgctgggattaaagctgtgtccaccactgcccggtcaaagcatg
ttttaatcttctc
gaattcagctcctaacatccacagcatgtggctcacaacctcataactac
agttctagaggaactagtgtcctctggctttcatgaacacctgggtgtat
gaagtgcctatgaaaactctctctgtctctgtctgtctctgtctctgtct
ctctctctctctctctcactctctcacacacacacacagagcaaaagagg
cagacagagagatagacagagagacagtatatacgcacacagtgggagta
gtgttgtggaatgaacacctggattatgcagtttctatgaacacagagag
agagagagagagagagagagagagagagagagaaagacagacagagagac
acacacagagaaagagacacacacagtgggggtagtgttgtgcaatgagt
tgaggcccccaggaaacagaagggctgctgatctctttttcttgacactg
atgttaactcatttcattcccgtggctcttgcagacagacttccttggcc
atcttcttttttttaaaatattttttattacatattttccacaattatat
ttccaatgctatcccaaaagtcccccataccctccccccacttccctacc
cacccactcccactttttggccctggcattcccctttactggggcatata
cagtttgcgtgtccaatgggcctctctttccagtgatggccgactaggcc
atcttttgatacatatgcagctagagtcaagagctccggggtactggtta
gttcataatgttgttccacctatagggttgcagatccctttagctccttg
ggtactttctctagctcctccattgggagccctgtgatccatccaatagc
tgactgtgagcatccacttctgtgtttgctaggccccggcatagtctcac
aagagacagctacatctgggtcctttcaacaaaatcttgctagtgtatgc
aattgtgtcagcgtttgggaagctgattatggggtggatccctggatatg
gcagtctctagatggtccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174257462_174258506
seq2: B6Ng01-162G15.b_48_1092 (reverse)

seq1  TTTGACCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCATTTAGGAGGC  50
      ||||||||||||||||||| ||||  |||||||||||||| |||||||||
seq2  TTTGACCGGGCAGTGGTGG-ACACAGCTTTAATCCCAGCA-TTAGGAGGC  48

seq1  AGAGGCAGGTGGATTTCTGAGTTGGAGGGGGGGAGGGGGGGAG-AAAAAG  99
      ||||||||||||| |||  |||  || ||||||| |||||||| ||||||
seq2  AGAGGCAGGTGGAATTCGAAGT--GAAGGGGGGAAGGGGGGAGAAAAAAG  96

seq1  AAAGGAACCTGCTTTTT-ACATTGTATGTTGCGATTCTACAATATATCAC  148
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGGAACTTGCTTTTTAACATTGTATGTTGCGATTCTACAATATATCAC  146

seq1  TGTTGCTGAATACTTTGTAGTTTGTTTTTAAAAGTAAAAAATGGGGCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGAATACTTTGTAGTTTGTTTTTAAAAGTAAAAAATGGGGCAGG  196

seq1  GCGTGGTAGCACACATGCCTTTAATCCCAGCACTCTGGAGACAGAGGCAG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCGTGGTAGCACACATGCC-TTAATCCCAGCACTCTGGAGACAGAGGCAG  245

seq1  GCGGATTTCTGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC-AAAGT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCGGATTTCTGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAAGT  295

seq1  G-AATTCCAGGACAGCCAGGGCTACACAGAGAAAACGTGTCTC-AAAAAA  345
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAATTCCAGGACAGCCAGGGCTACACAGAGAAAACGTGTCTCAAAAAAA  345

seq1  CAAAACAAAACCAATAAATAAATAAATAAAATAATAATAATAAAATAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACCAATAAATAAATAAATAAAATAATAATAATAAAATAAAA  395

seq1  AATAAAAAATGAAGGAAGAAAAGAATCAGGTTTAAGGCTGGGGAAACTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATGAAGGAAGAAAAGAATCAGGTTTAAGGCTGGGGAAACTAG  445

seq1  TCAGGTAGTAAAGAGCTGTTGCAGGACCAGCGCTCAGATCCTTAGCACCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGTAAAGAGCTGTTGCAGGACCAGCGCTCAGATCCTTAGCACCC  495

seq1  ACAGAAAGTCAGCATGATGCCACCTGTCTGTGGTCCCAGCCCCGGGGGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTCAGCATGATGCCACCTGTCTGTGGTCCCAGCCCCGGGGGGT  545

seq1  GAAGACTAGTGGGTCTCTGAAGTCTGCTTGCCAGCCAGGCTAGCAAACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAGTGGGTCTCTGAAGTCTGCTTGCCAGCCAGGCTAGCAAACTG  595

seq1  GATGCACTTTAGGCTCAGAGAGAGAGAGCAAGGTGGAAAGAGACTAAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTTTAGGCTCAGAGAGAGAGAGCAAGGTGGAAAGAGACTAAGGA  645

seq1  AGACACCGAGGCTGACCTGTACTTAACAATCATCTATTTAGATCCTTCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGAGGCTGACCTGTACTTAACAATCATCTATTTAGATCCTTCCC  695

seq1  TGGGTCAGTAAACTCCTTAAGGATTACATCATCAACTTAATTAGTCATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGTAAACTCCTTAAGGATTACATCATCAACTTAATTAGTCATCC  745

seq1  CCACCCCCCAGGCACCAGTCCCAGCGTGAGTTGCACCAGGAACATAGTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCAGGCACCAGTCCCAGCGTGAGTTGCACCAGGAACATAGTGG  795

seq1  CTCTGGGAAGAGGAAACTGGTCAGTGGTCCTGATGACCCTAACCACCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAAGAGGAAACTGGTCAGTGGTCCTGATGACCCTAACCACCAGT  845

seq1  GAAGGTCAAAGGGACCTAACCTCAGCTGGATGTCACTCGCCAGTTTGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAAAGGGACCTAACCTCAGCTGGATGTCACTCGCCAGTTTGGGA  895

seq1  ATGAAGGAAAAGGGATAAGGCCCCTGGGTTATTCCATAAAGCAGTCCATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAAAGGGATAAGGCCCCTGGGTTATTCCATAAAGCAGTCCATT  945

seq1  GCCTTCCCTCCACCCTGTGTCTGTCCCCCTGGTGGGATCTCTGGTCCCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTCCACCCTGTGTCTGTCCCCCTGGTGGGATCTCTGGTCCCTG  995

seq1  CTGGGTTTGCTCATCCAGAACAAAGGACACCCAATTACAGCAGAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGCTCATCCAGAACAAAGGACACCCAATTACAGCAGAGAATTC  1045

seq1: chr2_174181665_174182665
seq2: B6Ng01-162G15.g_66_1067

seq1  GAATTCAGCTCCTAACATCCACAGCATGTGGCTCACAACCTCATAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCTAACATCCACAGCATGTGGCTCACAACCTCATAACTAC  50

seq1  AGTTCTAGAGGAACTAGTGTCCTCTGGCTTTCATGAACACCTGGGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGAGGAACTAGTGTCCTCTGGCTTTCATGAACACCTGGGTGTAT  100

seq1  GAAGTGCCTATGAAAACTCTCTCTGTCTCTGTCTGTCTCTGTCTCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCTATGAAAACTCTCTCTGTCTCTGTCTGTCTCTGTCTCTGTCT  150

seq1  CTCTCTCTCTCTCTCTCACTCTCTCACACACACACACAGAGCAAAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCACTCTCTCACACACACACACAGAGCAAAAGAGG  200

seq1  CAGACAGAGAGATAGACAGAGAGACAGTATATACGCACACAGTGGGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAGAGATAGACAGAGAGACAGTATATACGCACACAGTGGGAGTA  250

seq1  GTGTTGTGGAATGAACACCTGGATTATGCAGTTTCTATGAACACAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGAATGAACACCTGGATTATGCAGTTTCTATGAACACAGAGAG  300

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGACAGAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGACAGAGAGAC  350

seq1  ACACACAGAGAAAGAGACACACACAGTGGGGGTAGTGTTGTGCAATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGAAAGAGACACACACAGTGGGGGTAGTGTTGTGCAATGAGT  400

seq1  TGAGGCCCCCAGGAAACAGAAGGGCTGCTGATCTCTTTTTCTTGACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCCCAGGAAACAGAAGGGCTGCTGATCTCTTTTTCTTGACACTG  450

seq1  ATGTTAACTCATTTCATTCCCGTGGCTCTTGCAGACAGACTTCCTTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACTCATTTCATTCCCGTGGCTCTTGCAGACAGACTTCCTTGGCC  500

seq1  ATCTTCTTTTTTTTAAAATATTTTTTATTACATATTTTCCACAATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTTTTTTAAAATATTTTTTATTACATATTTTCCACAATTATAT  550

seq1  TTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACTTCCCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACTTCCCTACC  600

seq1  CACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTTTACTGGGGCATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTTTACTGGGGCATATA  650

seq1  CAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC  700

seq1  ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTA  750

seq1  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  800

seq1  GGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCAATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCAATAGC  850

seq1  TGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCAC  900

seq1  AAGAGACAGCTACATCTGGGTCCTTTCAACAAAATCTTGCTAGTGTATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGCTACATCTGGGTCCTTTCAACAAAATCTTGCTAGTGTATGC  950

seq1  AATGGTGTCAGCGTTT-GGAAGCTGATTATGGGGTGGATCCCTGGATATG  999
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATTGTGTCAGCGTTTGGGAAGCTGATTATGGGGTGGATCCCTGGATATG  1000

seq1  GC  1001
      ||
seq2  GC  1002