BAC Information

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BAC

Clone NameB6Ng01-162J12
Chromosome2 (Build37)
Map Location 62,388,500 - 62,559,779
singlet/doubletdoublet
Overlap geneFap, Ifih1, Gca, Kcnh7
Upstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg
Downstream geneEG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J12.bB6Ng01-162J12.g
ACCDH955395DH955396
length2121,214
definitionDH955395|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J12, 5' end.DH955396|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,559,568 - 62,559,779)(62,388,500 - 62,389,709)
sequence
gaattcacacagaaaaaaggagtcactcctgcagaggtacaatgaactac
ataagcccaggttcttctaacccttccgattctttcatgaaacattttag
aaatcttgtctaatgtgtttacacaattttacaacattgttcccaaaaaa
attttagtttagagcatttttgtttgtttgtttgtttggttggttggttg
gttggttggttg
gaattcttgggtgtagggcctgccttttggtctagggcctgccttttggt
ctagggcctgcctttgggtctagggcctgcctttgggtctagggcctgcc
tttgggtgtgactggtaaactccagtgtcactagactggagaaacataat
tgctcctgtgtggtaggtatcagttgctaatagctttttgattagagatt
ttagtaatcttcagagacagacaagcaggagtagtggtatttaatcaaac
ttgactttcagccaatttgtcatctccaactaaaatgatattgttttacc
tggaggaaaatatctggaaattaaatagttgtgaaaaaaacaagagacat
acacataaagtttacacataaataaacaaacaaacaaaaacagtagtttg
attagatttactacagaaaagctaaatgggtaatatggttgcagggcata
aatcttatctaagccactgcaaagaaattaatgaccattatttgatctgg
gaacatctttatttgtgtacttttcaatttggtggatttcaacatcaaga
attttaaatggttaaaaaaaaattttaaaaaggacacgattaaagcccaa
agcaaactgttctgcagggctccacttccaaccttagcagactgcagggt
tcttaggagtaggttcggttcctgaagcttatttgtatttctctgtatat
gcttttcaggctatggagctctgtgaatactttcttgcctaatggtggta
ttgaaacataaaagagactccaaatccattagatcaactgagactatgtt
ttcaaaaaaaaaaagcaggtcttgtttcttccctgaacattttaaaataa
ggagattgaaaaaaagaagttctttgcttgacaaaaaggggcagtagact
agaagcggcttttacatacctctgcaagccatgtaatttttctacttttt
atatacagaaaacagggttatcatattaagatgaggaaccacactaatcc
atttcctcaattagccagcgtgagttttctaaagtacaatctggatcttg
tcatttcctgtaaaatctttcaagggatttccttttgtcctcaaaagaag
gaactaaccctctttaatggtttcatgaacattgcctgccggtttcagtt
cctatcttccaggcattcaatccccttgggaggcaggctctccctctaat
tccgagatgaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_62559568_62559779
seq2: B6Ng01-162J12.b_40_251 (reverse)

seq1  CAACCAACCAACCAACCAACCAACCAAACAAACAAACAAACAAAAATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCAACCAACCAACCAAACAAACAAACAAACAAAAATGCT  50

seq1  CTAAACTAAAATTTTTTTGGGAACAATGTTGTAAAATTGTGTAAACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAAAATTTTTTTGGGAACAATGTTGTAAAATTGTGTAAACACAT  100

seq1  TAGACAAGATTTCTAAAATGTTTCATGAAAGAATCGGAAGGGTTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGATTTCTAAAATGTTTCATGAAAGAATCGGAAGGGTTAGAAGA  150

seq1  ACCTGGGCTTATGTAGTTCATTGTACCTCTGCAGGAGTGACTCCTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCTTATGTAGTTCATTGTACCTCTGCAGGAGTGACTCCTTTTTT  200

seq1  CTGTGTGAATTC  212
      ||||||||||||
seq2  CTGTGTGAATTC  212

seq1: chr2_62388500_62389709
seq2: B6Ng01-162J12.g_67_1280

seq1  GAATTCTTGGGTGTAGGGCCTGCCTTTTGGTCTAGGGCCTGCCTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTGTAGGGCCTGCCTTTTGGTCTAGGGCCTGCCTTTTGGT  50

seq1  CTAGGGCCTGCCTTTGGGTCTAGGGCCTGCCTTTGGGTCTAGGGCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCCTGCCTTTGGGTCTAGGGCCTGCCTTTGGGTCTAGGGCCTGCC  100

seq1  TTTGGGTGTGACTGGTAAACTCCAGTGTCACTAGACTGGAGAAACATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTGTGACTGGTAAACTCCAGTGTCACTAGACTGGAGAAACATAAT  150

seq1  TGCTCCTGTGTGGTAGGTATCAGTTGCTAATAGCTTTTTGATTAGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTGTGGTAGGTATCAGTTGCTAATAGCTTTTTGATTAGAGATT  200

seq1  TTAGTAATCTTCAGAGACAGACAAGCAGGAGTAGTGGTATTTAATCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATCTTCAGAGACAGACAAGCAGGAGTAGTGGTATTTAATCAAAC  250

seq1  TTGACTTTCAGCCAATTTGTCATCTCCAACTAAAATGATATTGTTTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCAGCCAATTTGTCATCTCCAACTAAAATGATATTGTTTTACC  300

seq1  TGGAGGAAAATATCTGGAAATTAAATAGTTGTGAAAAAAACAAGAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAATATCTGGAAATTAAATAGTTGTGAAAAAAACAAGAGACAT  350

seq1  ACACATAAAGTTTACACATAAATAAACAAACAAACAAAAACAGTAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAGTTTACACATAAATAAACAAACAAACAAAAACAGTAGTTTG  400

seq1  ATTAGATTTACTACAGAAAAGCTAAATGGGTAATATGGTTGCAGGGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTACTACAGAAAAGCTAAATGGGTAATATGGTTGCAGGGCATA  450

seq1  AATCTTATCTAAGCCACTGCAAAGAAATTAATGACCATTATTTGATCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATCTAAGCCACTGCAAAGAAATTAATGACCATTATTTGATCTGG  500

seq1  GAACATCTTTATTTGTGTACTTTTCAATTTGGTGGATTTCAACATCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTTATTTGTGTACTTTTCAATTTGGTGGATTTCAACATCAAGA  550

seq1  ATTTTAAATGGTTAAAAAAAAATTTTAAAAAGGACACGATTAAAGCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGGTTAAAAAAAAATTTTAAAAAGGACACGATTAAAGCCCAA  600

seq1  AGCAAACTGTTCTGCAGGGCTCCACTTCCAACCTTAGCAGACTGCAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGTTCTGCAGGGCTCCACTTCCAACCTTAGCAGACTGCAGGGT  650

seq1  TCTTAGGAGTAGGTTCGGTTCCTGAAGCTTATTTGTATTTCTCTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGAGTAGGTTCGGTTCCTGAAGCTTATTTGTATTTCTCTGTATAT  700

seq1  GCTTTTCAGGCTATGGAGCTCTGTGAATAC-TTCTTGCCTAATGGTGGTA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTTTCAGGCTATGGAGCTCTGTGAATACTTTCTTGCCTAATGGTGGTA  750

seq1  TTGAAACATAAAAGAGACTCCAAATCCATTAGATCAACTGAGACTATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATAAAAGAGACTCCAAATCCATTAGATCAACTGAGACTATGTT  800

seq1  TTC-AAAAAAAAAAGCAGGTCTTGTTTCTTCCCTGAACA-TTTAAAATAA  847
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAAAAAAAAAAAGCAGGTCTTGTTTCTTCCCTGAACATTTTAAAATAA  850

seq1  GGAGA-TGAAAAAAAGAAGTTCTTTGCTTGAC-AAAAGGGGCAGTAGACT  895
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGATTGAAAAAAAGAAGTTCTTTGCTTGACAAAAAGGGGCAGTAGACT  900

seq1  AGAAGCGGC-TTTACATACCTCTGCAAGCCATGTAATTTTTCTTACTTTT  944
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  AGAAGCGGCTTTTACATACCTCTGCAAGCCATGTAATTTTTC-TACTTTT  949

seq1  TATATAACAGAAAACAGGG-TATCATATTAAGATGAGGAACCACACTAAT  993
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATAT-ACAGAAAACAGGGTTATCATATTAAGATGAGGAACCACACTAAT  998

seq1  CCATTTCCTCAATTAGCCAGCGTGAGTTTTCTAAAGTACAAATCT-GATC  1042
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  CCATTTCCTCAATTAGCCAGCGTGAGTTTTCTAAAGTAC-AATCTGGATC  1047

seq1  TTGTCATTTCCTGTAAAATCTTTC-AGGGATTTCCTTTTGTCCTCAAAAG  1091
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTCATTTCCTGTAAAATCTTTCAAGGGATTTCCTTTTGTCCTCAAAAG  1097

seq1  TAGGACTAAACTCTTTTAAATGGTTGCATAGACATTG-CTGCCCCGTTTT  1140
       ||||   ||| || || ||||||| |||  |||||| |||  ||| |||
seq2  AAGGAACTAACCCTCTTTAATGGTTTCATGAACATTGCCTG--CCGGTTT  1145

seq1  CAGTTCCTTACTCCTTTTCAGGGCTATCCATCCTCCCTAGGAGGCA-GCT  1189
      ||||||||      | |||  |||  || |||| || | ||||||| |||
seq2  CAGTTCCT-----ATCTTCCAGGCATTCAATCC-CCTTGGGAGGCAGGCT  1189

seq1  CT-CCTCTAAT---CAGATGAAGTG  1210
      || ||||||||    ||||||||||
seq2  CTCCCTCTAATTCCGAGATGAAGTG  1214