BAC Information

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BAC

Clone NameB6Ng01-162L09
Chromosome2 (Build37)
Map Location 174,769,413 - 174,770,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L09.bB6Ng01-162L09.g
ACCDH955481DH955482
length1,0801,052
definitionDH955481|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L09, 5' end.DH955482|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctggtggaatttttagggtcacttatatatactatcatatcat
ctgcaaatagtgatattttgacttcttcctttccaatttgtatcccattg
acctccttttgttgtctaattgttctggctaggactttgagtactatatt
gaatagaaagggagaaagtgggcagccttgtgtagtccctgattttagtg
ggattgcttccagcttctctccatttacttggttgttggctactggtttg
atgtagattgattttattatgtttagatatgggccttgaattcctgctct
ttccaagacttttatcatgaatgagtgttagattttgtcaactgctttct
gagcatctaacaagatgatcatgtgagttttgtctttgagtttgtttata
tagtggattatgttgatggatttccgtatattaaaccatccctgcttccc
tgggatgaagccctcttggtcatgatggattatccttttgatgtgttctt
gtattcagttagcaagaattttattgagtatttttgcattgatattcatg
aggtaaattggtttgaagttctctattttttttttattacgtattttctt
caattacatttccaatgctatcccaaaagtgcccccccaactccccctac
ccacccattcccattttttggccctggcattcccctgtactggggcatat
aatgtttgcctgaccaatgggcctctctttccagtgatggccgactaggt
catcttttgatacatatgcagctagattcaagagctctggggtactgggt
tagttcataatgttgttccaccgatagggttgcagatctctttagctcct
tgggatactttctctagctcctccattggggccctgtgatccatccaata
gttgactgtgagcatccacttctgtgtttgctggccccggcttagttctc
acaagggacagctattatcactgtcttttaacaaaggctgctagtgaatg
caatgtgtcatcgctgaggctaattatggggatggatcctgggattatgc
agtctctagtgtgaccatccttttgtctca
gaattctctgttgtaatcgcagcagatgctccagcgaccgctgtgtcagt
ttctcctcccagcattcctattatgtgtcagtcacagtattcatcatcat
tccataattctagaattttctgtgtggtttcttcctctgtcttagttctc
tattctgtgggatgaataattcttatgtgctgcaaactgaacggattagg
aattgaactaacttgggccacaggactaaaaactgacagatgggacacag
gtatagaaaagctggactaggtgggctatgcattctgatgagactcacca
gtggcttgtacaccattgagtgagaggtaggtttactgcaaacagcagaa
caaggagggcatagattagctaacttttgtcaggtagacactaaaagact
aagtgttcctcaagggactttattacctattctaagaacataatgttttt
gtagttgtgtgtgttatattttatgcagaattacgaccttgttgttttta
tctgggagttaagcatgacaggagaagtgattaggtctcacattgacaat
ggatcaatatatagtggttttcttttctgcagcaggtgcccattaagaca
ggaagaaaacaaccccaaataggaaagtcctgaaactgaccagattcact
aggccctcccttcctaagaatgtctaacactaaagactaccaaccagaga
cccaggaggtgagaaactctcgggactcaaagggagggaccttagataaa
atgccctacagtagggagagggaacttatagagcccacctccagcaggaa
gacagggcatcaaatgagggaggggtgccatcccacagtcacaactctga
cccataattgttcctgtctgaaggattacagggatggaaatggagaagag
cctgagaaaagatgtccagtgacaggcccaaagtgggatccagtcaaggg
agtcccaaagcctgacactatattgagttatggagcactcacaaaaggga
cctagcatcactgctcttcaaagaccaaaagcagctgaaagaagtcagat
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174769413_174770475
seq2: B6Ng01-162L09.g_69_1120

seq1  GAATTCTCTGTTGTAATCGCAGCAGATGCTCCAGCGACCGCTGTGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTGTAATCGCAGCAGATGCTCCAGCGACCGCTGTGTCAGT  50

seq1  TTCTCCTCCCAGCATTCCTATTATGTGTCAGTCACAGTATTCATCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCCAGCATTCCTATTATGTGTCAGTCACAGTATTCATCATCAT  100

seq1  TCCATAATTCTAGAATTTTCTGTGTGGTTTCTTCCTCTGTCTTAGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATTCTAGAATTTTCTGTGTGGTTTCTTCCTCTGTCTTAGTTCTC  150

seq1  TATTCTGTGGGATGAATAATTCTTATGTGCTGCAAACTGAACGGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTGGGATGAATAATTCTTATGTGCTGCAAACTGAACGGATTAGG  200

seq1  AATTGAACTAACTTGGGCCACAGGACTAAAAACTGACAGATGGGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTAACTTGGGCCACAGGACTAAAAACTGACAGATGGGACACAG  250

seq1  GTATAGAAAAGCTGGACTAGGTGGGCTATGCATTCTGATGAGACTCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAAAGCTGGACTAGGTGGGCTATGCATTCTGATGAGACTCACCA  300

seq1  GTGGCTTGTACACCATTGAGTGAGAGGTAGGTTTACTGCAAACAGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTACACCATTGAGTGAGAGGTAGGTTTACTGCAAACAGCAGAA  350

seq1  CAAGGAGGGCATAGATTAGCTAACTTTTGTCAGGTAGACACTAAAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGGCATAGATTAGCTAACTTTTGTCAGGTAGACACTAAAAGACT  400

seq1  AAGTGTTCCTCAAGGGACTTTATTACCTATTCTAAGAACATAATGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCCTCAAGGGACTTTATTACCTATTCTAAGAACATAATGTTTTT  450

seq1  GTAGTTGTGTGTGTTATATTTTATGCAGAATTACGACCTTGTTGTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTGTGTGTTATATTTTATGCAGAATTACGACCTTGTTGTTTTTA  500

seq1  TCTGGGAGTTAAGCATGACAGGAGAAGTGATTAGGTCTCACATTGACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGTTAAGCATGACAGGAGAAGTGATTAGGTCTCACATTGACAAT  550

seq1  GGATCAATATATAGTGGTTTTCTTTTCTGCAGCAGGTGCCCATTAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATATATAGTGGTTTTCTTTTCTGCAGCAGGTGCCCATTAAGACA  600

seq1  GGAAGAAAACAACCCCAAATAGGAAAGTCCTGAAACTGACCAGATTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAACAACCCCAAATAGGAAAGTCCTGAAACTGACCAGATTCACT  650

seq1  AGGCCCTCCCTTCCTAAGAATGTCTAACACTAAAGACTACCAACCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCCCTTCCTAAGAATGTCTAACACTAAAGACTACCAACCAGAGA  700

seq1  CCCAGGAGGTGAGAAACTCTCGGGACTCAAAGGGAGGGACCTTAGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGTGAGAAACTCTCGGGACTCAAAGGGAGGGACCTTAGATAAA  750

seq1  ATGCCCTACAGTAGGGAGAGGGAACTTATAGAGCCCACCTCCAGCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACAGTAGGGAGAGGGAACTTATAGAGCCCACCTCCAGCAGGAA  800

seq1  GACAGGGCATCAAATGAGGGAGGGGTGCCATCCCACAGTCACAACTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCATCAAATGAGGGAGGGGTGCCATCCCACAGTCACAACTCTGA  850

seq1  CCCATAATTGTTCCTGTCTGAAGGAATTACAGGGATGGAAATGGAGAAGA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCATAATTGTTCCTGTCTGAAGG-ATTACAGGGATGGAAATGGAGAAGA  899

seq1  GCCTGAGGAAAAGAAGGTCCAGTGACAGGCCCAAAGTGGGATCCAGGTCA  950
      |||||| |||||| | ||||||||||||||||||||||||||||| ||||
seq2  GCCTGA-GAAAAG-ATGTCCAGTGACAGGCCCAAAGTGGGATCCA-GTCA  946

seq1  AGGGGAGGTCCCAAAGCCTGACACTATTACTGAGGTTATGGAGCACTCAC  1000
      ||||   ||||||||||||||||||| || ||| ||||||||||||||||
seq2  AGGG--AGTCCCAAAGCCTGACACTA-TATTGA-GTTATGGAGCACTCAC  992

seq1  AAAAAGGGACCTAGCATCACTGCTCTCCAAAAGACCCAAAAAGCAGCTGA  1050
       ||||||||||||||||||||||||| | |||||||  ||||||||||||
seq2  -AAAAGGGACCTAGCATCACTGCTCTTC-AAAGACC--AAAAGCAGCTGA  1038

seq1  AAG-AGTCAGATGC  1063
      ||| ||||||||||
seq2  AAGAAGTCAGATGC  1052