BAC Information

Click to search

BAC

Clone NameB6Ng01-162P12
Chromosome2 (Build37)
Map Location 76,333,168 - 76,442,757
singlet/doubletdoublet
Overlap geneOsbpl6
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
Downstream genePrkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P12.bB6Ng01-162P12.g
ACCDH955671DH955672
length1,1021,149
definitionDH955671|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P12, 5' end.DH955672|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,441,652 - 76,442,757)(76,333,168 - 76,334,321)
sequence
gaattccagattaagacagggggatctctgagttcaaggtcatctgggat
taaaggtgtgggggcacacacctttaatctgggccacaccctctgctgga
gacctacataaggacattggaagaaggaagatttactctctcttctccac
ctgcttgccttgtgggactgagaaactgctagatccttggacttccatcc
ataagctgctgctgaccattgttgggagttggactacagactgtaagtca
tcagcaaattcctttactatatagagactactcataagttctgtgactct
agagagcccttactagtatactgggtatatggaaatgcgttcccaggctg
ttccaagagttcaggagtaggagaaagacatcccctgtgagactgagttt
cccacaatctttatggagttcactcgtctttacttctaaaatctgggaaa
aaaaaaaaaaaagaagagttgaaggcagaccaccaagtcttttagtacaa
agaagtttagaattcaggaaaaggtctcacgctagcgtttgacttgagtg
tgcagtcactccaagaaaagagctggaaatacaaactaaatactcagtct
tccctagtgtagctgaaatctattgctgggagtgaaaatatccaatttag
tggcttagtgaacagcaattttgtgggggaaggtcatcagaatagcacac
aaatctctttatgtaatttatttcctgggccgttccaaatgtagcattct
tgtacacagccttgaggagatgtggttattttgagtatggagagacagac
atttttttttcccctgtgaattatctttgttaggaaatctttattctatt
ggaagttgattggcattttgtatgtaacattatctttccaatctgaaggg
ggccacataccttctaacaaatataaattgaagccagaccaccagtcttt
tcgtataaagtatggtatcttttatgccttcagttataagcacattttag
ctggagtttctttaataagacccctttagggaggagctcatctagtgaga
tgagctgttcaacttacttctgagatggtccactgggaatatcagctttt
ct
gaattcacatttccatgccatgaatatcacaacacattttctgctttgta
gcttaaaaagattacccacctgccttgtcctgtgatctgaagctaagttc
tttttctactggctttttttaaatttctaactccttttcattctgtggtt
ttgtatataaacacacacacacacacacacacacacacacacacacggct
tactactgagtgggtcagttaatagtatttattggcagatagaaaaactc
tgacatgttccttcagctggctgattttaacttctgtgatacatggttgc
attaatttcactagctacatttatgcaaagcctacttgatagataaaagt
tacaggaatttgtgtttttcatctctgggaagttacatggcccaccccct
ccctggacacaatttatttccattaaggttactggattgttgtactagtg
tggaaacccttggtaggaggagaaggaatttaagtttcttatcaagacac
tgccatgatggaaaaagcaacaagttgatcttatcactggctttgtcggc
agtgacgacaaacaacgcaacatagtcaagtaaggtcttgtagagtgtgt
agtgggaagcaagacaggatgtttaaattgagacccatgcgtccttatgg
aagtaaaacagtgagctaaaacccatgactgcacatttagagaaagcagt
cagagtctccagtgtcctcattttgttgtgaaatgaactcgcctgtagat
tcctatgtaaagccctttcctgactattgtgatggtctacctttattgct
ttaaccgtttttatgaaacttgcctttgttatttcacagagcggcagatc
ctactttttctagccttccttgtgttatgtaagtttgcgtagtatggtac
cgtcttagtctttgatggaattcatctccatcccggatggcttgaatgag
aaattaggagagtggagaatgtactggacagacacatgtctggtgtgcaa
atgcaggcgtgggaggattagttacaggctgaggggacgacgctgatccc
tggcttctgagttgagcgctcagatttatgccaagttccaaacctcctct
aacggagaacttcagagaggctcctcttggagtactgattgtgtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76441652_76442757
seq2: B6Ng01-162P12.b_47_1148 (reverse)

seq1  AGAAAAGCTGATA-TCCCAGTGGACAATCTCAG-AGTAAGGTTGAACAGC  48
      ||||||||||||| ||||||||||| ||||||| ||||| ||||||||||
seq2  AGAAAAGCTGATATTCCCAGTGGACCATCTCAGAAGTAA-GTTGAACAGC  49

seq1  TCAATCTTCACTTAGATGAGCTTCCTCCCTGAAGGGGGTTCTTATTTAAA  98
      || ||| |||| ||||||||| |||||||| ||||||  ||||| |||||
seq2  TC-ATC-TCAC-TAGATGAGC-TCCTCCCTAAAGGGG--TCTTA-TTAAA  92

seq1  GAAACTCCAGCCTAAAATTGTGCTTATAACTGAAGGCAT-AAAGATA-CA  146
      |||||||||| |||||| ||||||||||||||||||||| ||||||| ||
seq2  GAAACTCCAG-CTAAAA-TGTGCTTATAACTGAAGGCATAAAAGATACCA  140

seq1  TACTTTATACGAAAAGACTTGGTGGTCTGGCTTCAA-TTATATTTGTTAG  195
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TACTTTATACGAAAAGAC-TGGTGGTCTGGCTTCAATTTATATTTGTTAG  189

seq1  AGGGTATGTGGCCCCCTTCAGATTGGAAAGAT-ATGTTACATACAAAATG  244
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGTATGTGGCCCCCTTCAGATTGGAAAGATAATGTTACATACAAAATG  239

seq1  CCAATCAACTTCCAATAGAATAAAGATTTCCTAACAAAGATAATTCACAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAACTTCCAATAGAATAAAGATTTCCTAACAAAGATAATTCACAG  289

seq1  GGG-AAAAAAAATGTCTGTCTCTCCATACTCAAAATAACCACATCTCCTC  343
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAAATGTCTGTCTCTCCATACTCAAAATAACCACATCTCCTC  339

seq1  AAGGCTGTGTACAAGAATGCTACATTTGGAACGGCCCAGGAAATAAATTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTGTACAAGAATGCTACATTTGGAACGGCCCAGGAAATAAATTA  389

seq1  CATAAAGAGATTTGTGTGCTATTCTGATGACCTTCCCCCACAAAATTGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAGATTTGTGTGCTATTCTGATGACCTTCCCCCACAAAATTGCT  439

seq1  GTTCACTAAGCCACTAAATTGGATATTTTCACTCCCAGCAATAGATTTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAAGCCACTAAATTGGATATTTTCACTCCCAGCAATAGATTTCA  489

seq1  GCTACACTAGGGAAGACTGAGTATTTAGTTTGTATTTCCAGCTCTTTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTAGGGAAGACTGAGTATTTAGTTTGTATTTCCAGCTCTTTTCT  539

seq1  TGGAGTGACTGCACACTCAAGTCAAACGCTAGCGTGAGACCTTTTCCTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGACTGCACACTCAAGTCAAACGCTAGCGTGAGACCTTTTCCTGA  589

seq1  ATTCTAAACTTCTTTGTACTAAAAGACTTGGTGGTCTGCCTTCAACTCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAACTTCTTTGTACTAAAAGACTTGGTGGTCTGCCTTCAACTCTT  639

seq1  CTTTTTTTTTTTTTTTCCCAGATTTTAGAAGTAAAGACGAGTGAACTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTCCCAGATTTTAGAAGTAAAGACGAGTGAACTCCA  689

seq1  TAAAGATTGTGGGAAACTCAGTCTCACAGGGGATGTCTTTCTCCTACTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTGTGGGAAACTCAGTCTCACAGGGGATGTCTTTCTCCTACTCC  739

seq1  TGAACTCTTGGAACAGCCTGGGAACGCATTTCCATATACCCAGTATACTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTTGGAACAGCCTGGGAACGCATTTCCATATACCCAGTATACTA  789

seq1  GTAAGGGCTCTCTAGAGTCACAGAACTTATGAGTAGTCTCTATATAGTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCTCTCTAGAGTCACAGAACTTATGAGTAGTCTCTATATAGTAA  839

seq1  AGGAATTTGCTGATGACTTACAGTCTGTAGTCCAACTCCCAACAATGGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGCTGATGACTTACAGTCTGTAGTCCAACTCCCAACAATGGTC  889

seq1  AGCAGCAGCTTATGGATGGAAGTCCAAGGATCTAGCAGTTTCTCAGTCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTTATGGATGGAAGTCCAAGGATCTAGCAGTTTCTCAGTCCC  939

seq1  ACAAGGCAAGCAGGTGGAGAAGAGAGAGTAAATCTTCCTTCTTCCAATGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAAGCAGGTGGAGAAGAGAGAGTAAATCTTCCTTCTTCCAATGT  989

seq1  CCTTATGTAGGTCTCCAGCAGAGGGTGTGGCCCAGATTAAAGGTGTGTGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTAGGTCTCCAGCAGAGGGTGTGGCCCAGATTAAAGGTGTGTGC  1039

seq1  CCCCACACCTTTAATCCCAGATGACCTTGAACTCAGAGATCCCCCTGTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCTTTAATCCCAGATGACCTTGAACTCAGAGATCCCCCTGTCT  1089

seq1  TAATCTGGAATTC  1106
      |||||||||||||
seq2  TAATCTGGAATTC  1102

seq1: chr2_76333168_76334321
seq2: B6Ng01-162P12.g_69_1217

seq1  GAATTCACATTTCCATGCCATGAATATCACAACACATTTTCTGCTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTCCATGCCATGAATATCACAACACATTTTCTGCTTTGTA  50

seq1  GCTTAAAAAGATTACCCACCTGCCTTGTCCTGTGATCTGAAGCTAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAAGATTACCCACCTGCCTTGTCCTGTGATCTGAAGCTAAGTTC  100

seq1  TTTTTCTACTGGCTTTTTTTAAATTTCTAACTCCTTTTCATTCTGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACTGGCTTTTTTTAAATTTCTAACTCCTTTTCATTCTGTGGTT  150

seq1  TTGTATATAAACACACACACACACACACACACACACACACACACACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATAAACACACACACACACACACACACACACACACACACACGGCT  200

seq1  TACTACTGAGTGGGTCAGTTAATAGTATTTATTGGCAGATAGAAAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAGTGGGTCAGTTAATAGTATTTATTGGCAGATAGAAAAACTC  250

seq1  TGACATGTTCCTTCAGCTGGCTGATTTTAACTTCTGTGATACATGGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTCCTTCAGCTGGCTGATTTTAACTTCTGTGATACATGGTTGC  300

seq1  ATTAATTTCACTAGCTACATTTATGCAAAGCCTACTTGATAGATAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCACTAGCTACATTTATGCAAAGCCTACTTGATAGATAAAAGT  350

seq1  TACAGGAATTTGTGTTTTTCATCTCTGGGAAGTTACATGGCCCACCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAATTTGTGTTTTTCATCTCTGGGAAGTTACATGGCCCACCCCCT  400

seq1  CCCTGGACACAATTTATTTCCATTAAGGTTACTGGATTGTTGTACTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACACAATTTATTTCCATTAAGGTTACTGGATTGTTGTACTAGTG  450

seq1  TGGAAACCCTTGGTAGGAGGAGAAGGAATTTAAGTTTCTTATCAAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCCTTGGTAGGAGGAGAAGGAATTTAAGTTTCTTATCAAGACAC  500

seq1  TGCCATGATGGAAAAAGCAACAAGTTGATCTTATCACTGGCTTTGTCGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGATGGAAAAAGCAACAAGTTGATCTTATCACTGGCTTTGTCGGC  550

seq1  AGTGACGACAAACAACGCAACATAGTCAAGTAAGGTCTTGTAGAGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGACAAACAACGCAACATAGTCAAGTAAGGTCTTGTAGAGTGTGT  600

seq1  AGTGGGAAGCAAGACAGGATGTTTAAATTGAGACCCATGCGTCCTTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGCAAGACAGGATGTTTAAATTGAGACCCATGCGTCCTTATGG  650

seq1  AAGTAAAACAGTGAGCTAAAACCCATGACTGCACATTTAGAGAAAGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACAGTGAGCTAAAACCCATGACTGCACATTTAGAGAAAGCAGT  700

seq1  CAGAGTCTCCAGTGTCCTCATTTTGTTGTGAAATGAACTCGCCTGTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTCCAGTGTCCTCATTTTGTTGTGAAATGAACTCGCCTGTAGAT  750

seq1  TCCTATGTAAAGCCCTTTCCTGACTATTGTGATGGTCTACCTTTATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTAAAGCCCTTTCCTGACTATTGTGATGGTCTACCTTTATTGCT  800

seq1  TTAACCGTTTTTATGAAACTTGCCTTTGTTATTTCACAGAGCGGCAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGTTTTTATGAAACTTGCCTTTGTTATTTCACAGAGCGGCAGATC  850

seq1  CTACTTTTTCTAGCC-TCCTTGTGTTATGTAAGTTTGCGTAGTATGGTAC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTACTTTTTCTAGCCTTCCTTGTGTTATGTAAGTTTGCGTAGTATGGTAC  900

seq1  CGTC-TAGTCTTTGATGGAATTCATCTCCATCCCGGATTGGCTTGAATGA  948
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CGTCTTAGTCTTTGATGGAATTCATCTCCATCCCGGA-TGGCTTGAATGA  949

seq1  GAAATTAGGAGAGTGGAGAATGTACTGGACAAGAACACAATGTCTGGTGT  998
      |||||||||||||||||||||||||||||||   |||| |||||||||||
seq2  GAAATTAGGAGAGTGGAGAATGTACTGGACA--GACAC-ATGTCTGGTGT  996

seq1  GCAAAATGCAGGCCGTGGGAGGATTAGTCACAGGGCTGAGGGGACGACGC  1048
      || ||||||||| ||||||||||||||| ||| |||||||||||||||||
seq2  GC-AAATGCAGG-CGTGGGAGGATTAGTTACA-GGCTGAGGGGACGACGC  1043

seq1  TGATCCCTGGCTTCCTGAG-TGAGCCGCTCAGAATCATTGCCAAGTCACC  1097
      ||||||||||||| ||||| |||| |||||||| | | ||||||||  | 
seq2  TGATCCCTGGCTT-CTGAGTTGAG-CGCTCAGATTTA-TGCCAAGTTCCA  1090

seq1  AAACTCCTC-AAC-GAGACCTTC-CAGAGGCTCCTCCTTGAGTACTGGTT  1144
      || |||||| ||| |||| ||||  ||||||||||| | |||||||| ||
seq2  AACCTCCTCTAACGGAGAACTTCAGAGAGGCTCCTCTTGGAGTACTGATT  1140

seq1  GGTGTGGGAG  1154
       |||||||||
seq2  -GTGTGGGAG  1149