BAC Information

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BAC

Clone NameB6Ng01-163C02
Chromosome2 (Build37)
Map Location 51,653,478 - 51,770,688
singlet/doubletdoublet
Overlap genePpia-ps2_635.1
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426
Downstream geneRbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C02.bB6Ng01-163C02.g
ACCDH955793DH955794
length1,2661,036
definitionDH955793|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C02, 5' end.DH955794|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,653,478 - 51,654,717)(51,769,644 - 51,770,688)
sequence
gaattcagacggctaaatggggatgatagaaaatatgtgttcaggatgta
agcactgtgtactccccctcaagataaaagcaggcttcaattttctacct
agaggaagaaaaacagcagcataaatatttaaatgcacttcatctcaata
tttctcttgattttagagagcgatgcttacttgggcttttactttggtta
caaatagaacctgataatgtgctcttttattttttaggttattttatgta
tatgtgtgttgcatgtctatgcatcatgggcatacctggtgcccaagaat
attagaacgtgggcatcagatctcctggcagcagagttccagatgatcgt
gagctaccatgtgggtggtaggaactgacccaggtcctctgcaagagcaa
caaatgctctaaacccttgagccatctttctagccccattgcattgtaga
aaggcagaggatgacacaaagacagtctactttctcttaaagcaaaagtc
agaaggttttacagtttagctctgtatctcctggccagagtttagtcata
cggccacaccaactgcttagaatgtcactgtgtggactgccacatgctct
gctgaagggttaattgtgacagaaggagaaagcttgacgttttggaagga
ctcatgctttgaaggcatttttttaaatttatgtgcattggtcttttgct
ttcatgtatgtctgtgtgagggtatcagatcttagagttacagacagttg
ttagctgccatgtggttgctgggaactgaacctgggtcctctggaagggg
aatcagtgctctttactgctaagccatcactttagccccctaaggatgct
ttctttccaggagcctatatctttttccttcctaatgtcttctgaccatt
ttttctagtttcctgctttcctatatgacacctttcctacgtgtactcat
tgtctgggcctagttagatttttatattgcttatgataaaaacaccataa
aacaaagcactttggagaggaaagaagttttattttggtttacagtgaca
ttttatcacttaatgatgtcaggaaaattactcaggacaaaaactcgatg
aaaggcagcagctatatagagaatgcttgcttacttggtttaagtccctt
tggactctgaattcttatttcaaaacagaacctacgccagagaacgcatt
atccaaatggcacttgtaacctctctcaactgtaatttatttataaagag
aaaatgtctcccacag
gaattctttgtcctgcagagcctgtcaacctgtgacttcagggatcagcc
tgagtccattggcaagattacacatgcattagaaatgcaacaatcacaga
ctttagagagtaaagttacgattgcacattaaaacggacttgagagacct
attacctaagacaatctatggaccttacttgagtcatagagcaaacatca
ttcttaaagtgatctttgtgagacaaccagggaaattcgatcaggaataa
aagttatattatggaattattatttgttttattaggtgtggtaatggtat
cttggcaatgctaaaaattccttaactattaatgttttcatggaatcact
tgatgccaaaactcattataaaatattctacaaaggggttggagagatgg
ctcagcagttagagcactgactgctcttccgaaggtcctgagtaatccca
gcaaccacgtggtggctctcgaccatccgtaatgagatctggcgccctct
tctggtgtgtctgaggacagccacagtgtacttacatataataaataaat
ctttaaaaatattctacaaaggtgggatgcagcttagttatagatagttg
tctagtatctacgataaagtgataaggtgtgctcatatccctgactctct
ttctgtctctctctgtctctctctgagtagtggataatagaagacattag
acggatattagcttgatagttgttggaacaggcgttcattgaagcatttg
ttgtacttttgtgagtttctgaaaaattctgtgagaaataaagatgaggt
ctggagaagtgtttcagctgacggggtgagtttgacaatctgaggttgct
tcctggaacccacagggcagaagaagaaccctctgatcaccacacatgca
gtgtgtgctaaacacacacacacacacacacacacacacacacacacacg
agagagaaagggagatgatatgtactatatatatttcatgtgtatttata
cttaaatttgtttataccccacaccacacaccacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51653478_51654717
seq2: B6Ng01-163C02.b_45_1310

seq1  GAATTCAGACGGCTAAATGGGGATGATAGAAAATATGTGTTCAGGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGGCTAAATGGGGATGATAGAAAATATGTGTTCAGGATGTA  50

seq1  AGCACTGTGTACTCCCCCTCAAGATAAAAGCAGGCTTCAATTTTCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGTACTCCCCCTCAAGATAAAAGCAGGCTTCAATTTTCTACCT  100

seq1  AGAGGAAGAAAAACAGCAGCATAAATATTTAAATGCACTTCATCTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAAAAACAGCAGCATAAATATTTAAATGCACTTCATCTCAATA  150

seq1  TTTCTCTTGATTTTAGAGAGCGATGCTTACTTGGGCTTTTACTTTGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGATTTTAGAGAGCGATGCTTACTTGGGCTTTTACTTTGGTTA  200

seq1  CAAATAGAACCTGATAATGTGCTCTTTTATTTTTTAGGTTATTTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAACCTGATAATGTGCTCTTTTATTTTTTAGGTTATTTTATGTA  250

seq1  TATGTGTGTTGCATGTCTATGCATCATGGGCATACCTGGTGCCCAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTTGCATGTCTATGCATCATGGGCATACCTGGTGCCCAAGAAT  300

seq1  ATTAGAACGTGGGCATCAGATCTCCTGGCAGCAGAGTTCCAGATGATCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACGTGGGCATCAGATCTCCTGGCAGCAGAGTTCCAGATGATCGT  350

seq1  GAGCTACCATGTGGGTGGTAGGAACTGACCCAGGTCCTCTGCAAGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCATGTGGGTGGTAGGAACTGACCCAGGTCCTCTGCAAGAGCAA  400

seq1  CAAATGCTCTAAACCCTTGAGCCATCTTTCTAGCCCCATTGCATTGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTAAACCCTTGAGCCATCTTTCTAGCCCCATTGCATTGTAGA  450

seq1  AAGGCAGAGGATGACACAAAGACAGTCTACTTTCTCTTAAAGCAAAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGATGACACAAAGACAGTCTACTTTCTCTTAAAGCAAAAGTC  500

seq1  AGAAGGTTTTACAGTTTAGCTCTGTATCTCCTGGCCAGAGTTTAGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTTACAGTTTAGCTCTGTATCTCCTGGCCAGAGTTTAGTCATA  550

seq1  CGGCCACACCAACTGCTTAGAATGTCACTGTGTGGACTGCCACATGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACACCAACTGCTTAGAATGTCACTGTGTGGACTGCCACATGCTCT  600

seq1  GCTGAAGGGTTAATTGTGACAGAAGGAGAAAGCTTGACGTTTTGGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGGTTAATTGTGACAGAAGGAGAAAGCTTGACGTTTTGGAAGGA  650

seq1  CTCATGCTTTGAAGGCATTTTTTTAAATTTATGTGCATTGGTCTTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTTTGAAGGCATTTTTTTAAATTTATGTGCATTGGTCTTTTGCT  700

seq1  TTCATGTATGTCTGTGTGAGGGTATCAGATCTTAGAGTTACAGACAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATGTCTGTGTGAGGGTATCAGATCTTAGAGTTACAGACAGTTG  750

seq1  TTAGCTGCCATGTGGTTGCTGGGAACTGAACCTGGGTCCTCTGGAAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCCATGTGGTTGCTGGGAACTGAACCTGGGTCCTCTGGAAGGGG  800

seq1  AATCAGTGCTCTTTACTGCTAAGCCATCACTTTAGCCCCCTAAGGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGCTCTTTACTGCTAAGCCATCACTTTAGCCCCCTAAGGATGCT  850

seq1  TTCTTTCCAGGAGCCTATATCTTTTTCCTTCCTAATGTCTTCTGACCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCAGGAGCCTATATCTTTTTCCTTCCTAATGTCTTCTGACCATT  900

seq1  TTTGCTAG-TTCCTGCTTTCCTATATGACACC-TTCCTACGTGTACTCAT  948
      ||| |||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTCTAGTTTCCTGCTTTCCTATATGACACCTTTCCTACGTGTACTCAT  950

seq1  TGTCT-GGCCTAGTTAGA-TTTTATATTGC-TATGAT-AAAACACCAT-A  993
      ||||| |||||||||||| ||||||||||| |||||| |||||||||| |
seq2  TGTCTGGGCCTAGTTAGATTTTTATATTGCTTATGATAAAAACACCATAA  1000

seq1  AACAAAGCAACTTGGAGAGGAAAG-AGTTT--ATTTGGTTTACAGTTGAC  1040
      |||||||||  ||||||||||||| |||||   |||||||||||| ||||
seq2  AACAAAGCACTTTGGAGAGGAAAGAAGTTTTATTTTGGTTTACAG-TGAC  1049

seq1  ATTTTATCACTAAATGATGTCAAGGAAAATACTCAAGGACAAAAACCCGA  1090
      ||||||||||| |||||||||| | ||| ||||| ||||||||||| |||
seq2  ATTTTATCACTTAATGATGTCAGGAAAATTACTC-AGGACAAAAACTCGA  1098

seq1  TGACAAGCAGCAGCTATAGAGA-AATGC-TGCTTAC-TGGTTT-AGT-CC  1135
      ||| | |||||||||||| ||| ||||| ||||||| |||||| ||| ||
seq2  TGAAAGGCAGCAGCTATATAGAGAATGCTTGCTTACTTGGTTTAAGTCCC  1148

seq1  TCTTGAC-CTGATTTCTTA-TTCAAAACAGAA-CTACG-CAGAGACAGCA  1181
      | | ||| |||| |||||| |||||||||||| ||||| ||||||  |||
seq2  TTTGGACTCTGAATTCTTATTTCAAAACAGAACCTACGCCAGAGAACGCA  1198

seq1  TAGCCCACAATGCAC---TGAACTCTC-CAAC-ATGATTTATTAATAA--  1224
      |   ||| |  ||||   | | ||||| ||||  | ||||||| ||||  
seq2  TTATCCAAATGGCACTTGTAACCTCTCTCAACTGTAATTTATTTATAAAG  1248

seq1  AGAAAATG--TCCCACAG  1240
      ||||||||  ||||||||
seq2  AGAAAATGTCTCCCACAG  1266

seq1: chr2_51769644_51770688
seq2: B6Ng01-163C02.g_67_1102 (reverse)

seq1  GTGTGTGTGTGTGTGTGT-GTGTATAAAACAAAATTTTAAAGTATAAATA  49
      ||||| ||||||| |||| | |||| |||||||   || |||||||||||
seq2  GTGTG-GTGTGTG-GTGTGGGGTAT-AAACAAA---TTTAAGTATAAATA  44

seq1  CACATTGAAATATATATAGTACATTTTCATCTTCCCTTTCTCTCTCGTGT  99
      |||| |||||||||||||||||| | ||||| ||||||||||||||||||
seq2  CACA-TGAAATATATATAGTACA-TATCATC-TCCCTTTCTCTCTCGTGT  91

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGCACACACTGCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGCACACACTGCAT  141

seq1  GTGTGGTGATCAGAGGGTTCTTCCTTCTGCCCTGTGGGTTCCAGGAAGCA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGTGGTGATCAGAGGGTTCTT-CTTCTGCCCTGTGGGTTCCAGGAAGCA  190

seq1  ACCTCAGATTGTCAAACTCACCCCGTCAGCTGAAACACTTCTCCAGACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGATTGTCAAACTCACCCCGTCAGCTGAAACACTTCTCCAGACCT  240

seq1  CATCTTTATTTCTCACAGAATTTTTCAGAAACTCACAAAAGTACAACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATTTCTCACAGAATTTTTCAGAAACTCACAAAAGTACAACAAA  290

seq1  TGCTTCAATGAACGCCTGTTCCAACAACTATCAAGCTAATATCCGTCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAATGAACGCCTGTTCCAACAACTATCAAGCTAATATCCGTCTAA  340

seq1  TGTCTTCTATTATCCACTACTCAGAGAGAGACAGAGAGAGACAGAAAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTATTATCCACTACTCAGAGAGAGACAGAGAGAGACAGAAAGAG  390

seq1  AGTCAGGGATATGAGCACACCTTATCACTTTATCGTAGATACTAGACAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGATATGAGCACACCTTATCACTTTATCGTAGATACTAGACAAC  440

seq1  TATCTATAACTAAGCTGCATCCCACCTTTGTAGAATATTTTTAAAGATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAACTAAGCTGCATCCCACCTTTGTAGAATATTTTTAAAGATTT  490

seq1  ATTTATTATATGTAAGTACACTGTGGCTGTCCTCAGACACACCAGAAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATGTAAGTACACTGTGGCTGTCCTCAGACACACCAGAAGAG  540

seq1  GGCGCCAGATCTCATTACGGATGGTCGAGAGCCACCACGTGGTTGCTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCAGATCTCATTACGGATGGTCGAGAGCCACCACGTGGTTGCTGGG  590

seq1  ATTACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTAACTGCTGAGCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTAACTGCTGAGCCAT  640

seq1  CTCTCCAACCCCTTTGTAGAATATTTTATAATGAGTTTTGGCATCAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAACCCCTTTGTAGAATATTTTATAATGAGTTTTGGCATCAAGTG  690

seq1  ATTCCATGAAAACATTAATAGTTAAGGAATTTTTAGCATTGCCAAGATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGAAAACATTAATAGTTAAGGAATTTTTAGCATTGCCAAGATAC  740

seq1  CATTACCACACCTAATAAAACAAATAATAATTCCATAATATAACTTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACACCTAATAAAACAAATAATAATTCCATAATATAACTTTTAT  790

seq1  TCCTGATCGAATTTCCCTGGTTGTCTCACAAAGATCACTTTAAGAATGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCGAATTTCCCTGGTTGTCTCACAAAGATCACTTTAAGAATGAT  840

seq1  GTTTGCTCTATGACTCAAGTAAGGTCCATAGATTGTCTTAGGTAATAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCTATGACTCAAGTAAGGTCCATAGATTGTCTTAGGTAATAGGT  890

seq1  CTCTCAAGTCCGTTTTAATGTGCAATCGTAACTTTACTCTCTAAAGTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGTCCGTTTTAATGTGCAATCGTAACTTTACTCTCTAAAGTCTG  940

seq1  TGATTGTTGCATTTCTAATGCATGTGTAATCTTGCCAATGGACTCAGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTGCATTTCTAATGCATGTGTAATCTTGCCAATGGACTCAGGCT  990

seq1  GATCCCTGAAGTCACAGGTTGACAGGCTCTGCAGGACAAAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGAAGTCACAGGTTGACAGGCTCTGCAGGACAAAGAATTC  1036