BAC Information

Click to search

BAC

Clone NameB6Ng01-163C11
Chromosome2 (Build37)
Map Location 79,268,289 - 79,408,062
singlet/doubletdoublet
Overlap geneCerkl, Neurod1
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C11.bB6Ng01-163C11.g
ACCDH955811DH955812
length1,1071,070
definitionDH955811|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C11, 5' end.DH955812|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,268,289 - 79,269,400)(79,406,987 - 79,408,062)
sequence
gaattcacactcctcactaattctggtccctgactggatggtttcattta
gttagacgtttggacaagaaactttcaaacaatgacttttccattctatg
acagactgtggcacaaggagtattttttccctctgaaggtggggggaatc
agctgtttttaatttcataaactcgtagctaattaaaaccagactgtgaa
ccacattctactgttctccaagacaggtctaactgaagccgacctgaaat
atttctactgcaaattgcagcatcgcattttcttgtttaaaaaaaaaaaa
agaaaaagaaaaaaagaaaaaagactttaagtcaatagaaggtaagttta
agtaaagcacaaatctgtggtgtgatattctatagaaattcattaaaaat
cgggtttcaaaacttgttcccgatggaaggggaactgcaacttcctggtt
tgcaatcacaacccctacaggaggctgggggcggagggtcagaggggtgt
cggtggcggcagaagggcgtggcggcagcagggtgtggggggcgtgggaa
ggtagggggccgccactcaccagccgggagctcgggctggatgcgtcgcc
accgcagggcccgctcgcccaacgccacatcgcagctttccctccggatc
tcgaagatgccacgcagcaaaacccgctcgggttcagcagctgccttttg
ggttctccggaggcgcctcctccagggcgcccacccggctcctgcgtctc
ccccggaacatggtgacgcggtgctgggccgaattggggagccaccagaa
atcttcgtgggatggaagtgtggctacagccactgcctgggccttgttcc
acgctgccaaggcaaccaaagctcctgaaaggaaggcggggcggaaggga
ggagcctcgggagctttctcttttgccccagagagggcactgtcctctct
ggaccattctgctagtatgaattttctggctgagctccgggagtttgcca
ggcatcccccaaattggatgcttaggcatcactagtctctgtttaatgaa
tgtgaaggttcttggtccgatatctaaagaaaatcaaaattctgagttgt
gggcaca
gaattcaggtttccttcagtgcatggggctgatggtatagatgaggggaa
ggaaaagcaggtcatgtactcttttctaccatgtcccataatctatattg
tgtgcattattcacggataatcatgaagatgaggatccttgagctttcca
ggctaataccaataggaagtctaagtgattgtgcaattatgatttcaaaa
gtatttctgactcctttcagacccagctgagagaagcatggctataatta
gagtgcatgccttcacctctgctgacaaggtccttgtctgacctgttgtc
cttagctgggctcactattcatggaggaatcttggctctctaaaaagtct
ttgaaatgtaaattccgtgggcattggagtacaaatagtacttagcatgg
cataaactcattagtagtttttctttgcatgggtgtatgggtgtttgtgg
gtgcacatacatacgcacctgtgcatgtatgtacatgcaaatacatatgt
atgcatatatggagagagcagaggttgatgactgtcttcctcaaccatta
tctatttatttacggaggcaggattgctcttttgaaccgggtgctcacta
tttcacagtgtagctagtcactgaggatcccctgtccttgcatctcaagt
ttctgaggttacaggcaagccaccgccactgagcctgtcacttacatggg
tgcaggatttgacctcagttccttgtgactgtatgacagacactttgcac
aatgaactatctcccaatcccccttttcaagtgagtttgcttatttgttt
ttgtttgtttcaattctttattttgtcttgagagaatctacctatgccag
gcactgagatgttctccttttttttttttttctattttcaacaaaattca
ttgttccccaaagatccaccaagtagattatgcactgtttaaaacacaag
aaactgtttcagactgttagactttgcccaaggccacatgctacattgag
tacatacagtaacaatttaagcttgtgggccactgggaaaccattttctt
tcattaacatatttctgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79268289_79269400
seq2: B6Ng01-163C11.b_46_1152

seq1  GAATTCACACTCCTCACTAATTCTGGTCCCTGACTGGATGGTTTCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCCTCACTAATTCTGGTCCCTGACTGGATGGTTTCATTTA  50

seq1  GTTAGACGTTTGGACAAGAAACTTTCAAACAATGACTTTTCCATTCTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACGTTTGGACAAGAAACTTTCAAACAATGACTTTTCCATTCTATG  100

seq1  ACAGACTGTGGCACAAGGAGTATTTTTTCCCTCTGAAGGTGGGGGGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTGGCACAAGGAGTATTTTTTCCCTCTGAAGGTGGGGGGAATC  150

seq1  AGCTGTTTTTAATTTCATAAACTCGTAGCTAATTAAAACCAGACTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTTTAATTTCATAAACTCGTAGCTAATTAAAACCAGACTGTGAA  200

seq1  CCACATTCTACTGTTCTCCAAGACAGGTCTAACTGAAGCCGACCTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCTACTGTTCTCCAAGACAGGTCTAACTGAAGCCGACCTGAAAT  250

seq1  ATTTCTACTGCAAATTGCAGCATCGCATTTTCTTGTTTAAAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTGCAAATTGCAGCATCGCATTTTCTTGTTTAAAAAAAAAAAA  300

seq1  AGAAAAAGAAAAAAAGAAAAAAGACTTTAAGTCAATAGAAGGTAAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAAAAGAAAAAAGACTTTAAGTCAATAGAAGGTAAGTTTA  350

seq1  AGTAAAGCACAAATCTGTGGTGTGATATTCTATAGAAATTCATTAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCACAAATCTGTGGTGTGATATTCTATAGAAATTCATTAAAAAT  400

seq1  CGGGTTTCAAAACTTGTTCCCGATGGAAGGGGAACTGCAACTTCCTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCAAAACTTGTTCCCGATGGAAGGGGAACTGCAACTTCCTGGTT  450

seq1  TGCAATCACAACCCCTACAGGAGGCTGGGGGCGGAGGGTCAGAGGGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCACAACCCCTACAGGAGGCTGGGGGCGGAGGGTCAGAGGGGTGT  500

seq1  CGGTGGCGGCAGAAGGGCGTGGCGGCAGCAGGGTGTGGGGGGCGTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCGGCAGAAGGGCGTGGCGGCAGCAGGGTGTGGGGGGCGTGGGAA  550

seq1  GGTAGGGGGCCGCCACTCACCAGCCGGGAGCTCGGGCTGGATGCGTCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGGCCGCCACTCACCAGCCGGGAGCTCGGGCTGGATGCGTCGCC  600

seq1  ACCGCAGGGCCCGCTCGCCCAACGCCACATCGCAGCTTTCCCTCCGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGGGCCCGCTCGCCCAACGCCACATCGCAGCTTTCCCTCCGGATC  650

seq1  TCGAAGATGCCACGCAGCAAAACCCGCTCGGGTTCAGCAGCTGCC-TTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCGAAGATGCCACGCAGCAAAACCCGCTCGGGTTCAGCAGCTGCCTTTTG  700

seq1  GGTTCTCCGGAGGCGCCTCCTCCAGGGCGCCCACCCGGCTCCTGCGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCGGAGGCGCCTCCTCCAGGGCGCCCACCCGGCTCCTGCGTCTC  750

seq1  CCCCGGAACATGGTGACGCGGTGCTGGGCCGAATTGGGGAGCCACCAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAACATGGTGACGCGGTGCTGGGCCGAATTGGGGAGCCACCAGAA  800

seq1  ATCTTCGTGGGAAGGAAGTGTGGCTACAGCCACTGCCTGGGCCTTGTCCC  849
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATCTTCGTGGGATGGAAGTGTGGCTACAGCCACTGCCTGGGCCTTGTTCC  850

seq1  ACGCTGCCAAGGCAACCAAAAGCTCCTG-AAGGAAGGCGGGGCGGAAGGG  898
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  ACGCTGCCAAGGCAACC-AAAGCTCCTGAAAGGAAGGCGGGGCGGAAGGG  899

seq1  AGGAGCCCCGGGAGCTTTCTCTTTTGCCCCCAGAGAGGGCCACTGTCCTC  948
      ||||||| |||||||||||||||||| |||||||||||| ||||||||||
seq2  AGGAGCCTCGGGAGCTTTCTCTTTTG-CCCCAGAGAGGG-CACTGTCCTC  947

seq1  TCTGGACCATGCTGCTAGTATGAATTTTCCTGGCTGAGCTCCGGGAGTTT  998
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  TCTGGACCATTCTGCTAGTATGAATTTT-CTGGCTGAGCTCCGGGAGTTT  996

seq1  GCCAGGCATCCCCCAAATTGGATTGCTTAGGCATCACCTAGTCTCTTGTT  1048
      |||||||||||||||||||||| ||||||||||||| |||||||| ||||
seq2  GCCAGGCATCCCCCAAATTGGA-TGCTTAGGCATCA-CTAGTCTC-TGTT  1043

seq1  AAATGAA-GTGCAGGTTCTT-GTCAGATAAATCTAAAGAGAATCCAAAAT  1096
       |||||| ||| |||||||| ||| |||  ||||||||| ||| ||||||
seq2  TAATGAATGTGAAGGTTCTTGGTCCGAT--ATCTAAAGAAAAT-CAAAAT  1090

seq1  TCTGAGTTGT-GGCACA  1112
      |||||||||| ||||||
seq2  TCTGAGTTGTGGGCACA  1107

seq1: chr2_79406987_79408062
seq2: B6Ng01-163C11.g_71_1140 (reverse)

seq1  AAGCAGAAATGTTGTAATTGAAAGAGAATGGTTTCCCAGTGGCCCACAAA  50
      ||||||||||  ||| | ||||||| ||||||||||||||||||||| ||
seq2  AAGCAGAAAT-ATGTTAATGAAAGAAAATGGTTTCCCAGTGGCCCAC-AA  48

seq1  GCTTAAATTGTTACTGTTATGTACTC-ATGTAGCATTGTGGCCTTGGGCA  99
      |||||||||||||||| ||||||||| |||||||| ||||||||||||||
seq2  GCTTAAATTGTTACTG-TATGTACTCAATGTAGCA-TGTGGCCTTGGGCA  96

seq1  AAGTCTTAACAGTTCTGAAACAGTTTCTTGTGTTTTAAAACAGTGACATT  149
      ||||| |||||| ||||||||||||||||||||||| |||||||| ||| 
seq2  AAGTC-TAACAG-TCTGAAACAGTTTCTTGTGTTTT-AAACAGTG-CATA  142

seq1  ATCTACTTGGTGGATCTTTGGGGAACAATGAATTATGTTGAAAATAGAAA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTACTTGGTGGATCTTTGGGGAACAATGAATTTTGTTGAAAATAGAAA  192

seq1  AAAAAAAAAAAGGAGAACATCTCAGTGCCTGGCATAGGTAGATTCTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGGAGAACATCTCAGTGCCTGGCATAGGTAGATTCTCTCA  242

seq1  AGACAAAATAAAGAATTGAAACAAACAAAAACAAATAAGCAAACTCACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATAAAGAATTGAAACAAACAAAAACAAATAAGCAAACTCACTT  292

seq1  GAAAAGGGGGATTGGGAGATAGTTCATTGTGCAAAGTGTCTGTCATACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGGATTGGGAGATAGTTCATTGTGCAAAGTGTCTGTCATACAG  342

seq1  TCACAAGGAACTGAGGTCAAATCCTGCACCCATGTAAGTGACAGGCTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGAACTGAGGTCAAATCCTGCACCCATGTAAGTGACAGGCTCAG  392

seq1  TGGCGGTGGCTTGCCTGTAACCTCAG-AACTTGAGATGCAAGGACAGGGG  448
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGCGGTGGCTTGCCTGTAACCTCAGAAACTTGAGATGCAAGGACAGGGG  442

seq1  ATCCTCAGTGACTAGCTACACTGTGAAATAGTGAGCACCCGGTTCAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTGACTAGCTACACTGTGAAATAGTGAGCACCCGGTTCAAAAG  492

seq1  AGCAATCCTGCCTCCGTAAATAAATAGATAATGGTTGAGGAAGACAGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTGCCTCCGTAAATAAATAGATAATGGTTGAGGAAGACAGTCA  542

seq1  TCAACCTCTGCTCTCTCCATATATGCATACATATGTATTTGCATGTACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCTGCTCTCTCCATATATGCATACATATGTATTTGCATGTACAT  592

seq1  ACATGCACAGGTGCGTATGTATGTGCACCCACAAACACCCATACACCCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGGTGCGTATGTATGTGCACCCACAAACACCCATACACCCAT  642

seq1  GCAAAGAAAAACTACTAATGAGTTTATGCCATGCTAAGTACTATTTGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAAAACTACTAATGAGTTTATGCCATGCTAAGTACTATTTGTAC  692

seq1  TCCAATGCCCACGGAATTTACATTTCAAAGACTTTTTAGAGAGCCAAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCCCACGGAATTTACATTTCAAAGACTTTTTAGAGAGCCAAGAT  742

seq1  TCCTCCATGAATAGTGAGCCCAGCTAAGGACAACAGGTCAGACAAGGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGAATAGTGAGCCCAGCTAAGGACAACAGGTCAGACAAGGACC  792

seq1  TTGTCAGCAGAGGTGAAGGCATGCACTCTAATTATAGCCATGCTTCTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCAGAGGTGAAGGCATGCACTCTAATTATAGCCATGCTTCTCTC  842

seq1  AGCTGGGTCTGAAAGGAGTCAGAAATACTTTTGAAATCATAATTGCACAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTCTGAAAGGAGTCAGAAATACTTTTGAAATCATAATTGCACAA  892

seq1  TCACTTAGACTTCCTATTGGTATTAGCCTGGAAAGCTCAAGGATCCTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGACTTCCTATTGGTATTAGCCTGGAAAGCTCAAGGATCCTCAT  942

seq1  CTTCATGATTATCCGTGAATAATGCACACAATATAGATTATGGGACATGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGATTATCCGTGAATAATGCACACAATATAGATTATGGGACATGG  992

seq1  TAGAAAAGAGTACATGACCTGCTTTTCCTTCCCCTCATCTATACCATCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAGTACATGACCTGCTTTTCCTTCCCCTCATCTATACCATCAG  1042

seq1  CCCCATGCACTGAAGGAAACCTGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  CCCCATGCACTGAAGGAAACCTGAATTC  1070