BAC Information

Click to search

BAC

Clone NameB6Ng01-163E16
Chromosome2 (Build37)
Map Location 41,691,182 - 41,812,184
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E16.bB6Ng01-163E16.g
ACCDH955917DH955918
length991862
definitionDH955917|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E16, 5' end.DH955918|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,811,182 - 41,812,184)(41,691,182 - 41,692,036)
sequence
gaattcaaaactaaaatatagagggtactatatgtgaaaataatgttaga
taaaacaaatttcacagccataactgttttcaccccaggaagggaaatca
tcgttgtctgctcaagtgccatgaatcattcaacagcttgtaggctgcta
gtcatggctacataaacctataatcgcagaaaaggagagaaagagctgat
gatgtatttagggggcagcctggtctgtagaggagactctgtttcccaaa
gcatctaatctaccaatcaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaa
gaaaaaagaaaaaagtaaacaaacggacgctagcaaattaaaaagccagt
tgtaagatggaatctgccataaagacccagggttttgtggtcaggtcact
tccaccttataaaggtcttttgagttttgggtttagttgtagtaaggtgg
taagactgcaaagccagcctcaggtttaagtatttcttcttccagattac
tgtgagcgattgaattagatgaaaggctatgacatttgatcctagttgat
ttccagaacagccttagtcccagaaacgaaacagatatccttatactgtg
tacaagagatgactcatcctgtgaaatgtttgctgtcacacaaggacctt
gcaacacaaaaccccagcatgctgcgtaatgtcatatctacagtgatgta
tacctgtaatttcggcactgtgacagaataaagtcataggattcagaggg
tttcctggattctcctgactcaaccactagttggatcaatggcaagaggt
tcagtacaaagcctaaacaaagaacatgaagtggataatgatggaagagg
acattcatcagtgatgtttggcctctgcacagtgcgtgcacagcatgtgt
agggatatacaccatatgtacttagcacaaggacatcgttcttttcatga
tcattatttctagaagtgtcattagtccataaattgcatgt
gaattcttacaatctaatttgatcttgaaagggaaagcatattattatca
atcaactgtaaccagcattgactttgaacattatccaaattttataatgc
atattcaggtagttaaaacagttgtcaaaagtagtctacttgaaccatag
tctgtcacttaatctcaaaatgcaatttgttgtggtttacttggttatta
ttttgcatagctgcataggctatagggggagtcaaatatgtctggctgaa
ttagaaggaacacagaataactagaactgaaatattgatttataaaactt
aagtaaaaagcaactggttttacgtccttgatatggaccggtaggtacaa
atttcataatacacatctgatgtagaacattgattctcagacctaataag
ctaaaattccctgctaaaattctgaacaatgtctgatttggcagatctgg
aagagggtctgaaattccatattataatacatttttatatgatgcaccat
atagactattaggctatagaccacagcctaatggtccagggagcaatata
cacaatatcccatgaagctctatagtttcttctgaatatccatgaatatg
gcaatctaatacagtcatagctatatattaatttaattttaaatgaatta
tttgaatcttttctacccattttttcttatagtcagtattaggatggtgt
tctaataaaagctgtgccataaaatcagtaacgttgtgaagtgtggatag
ggggtcttgttaatatctactcctacttcactggcccctgctttcctaag
agctaagtattgcaggggccaatggtcccttttttttttttctcttcttt
tttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41811182_41812184
seq2: B6Ng01-163E16.b_43_1033 (reverse)

seq1  ACATGCAAATTTTATGGACTAATTGACACTTCTAGAAATAATGATTCATT  50
      ||||||||  |||||||||||| ||||||||||||||||||||| |||| 
seq2  ACATGCAA--TTTATGGACTAA-TGACACTTCTAGAAATAATGA-TCAT-  45

seq1  GAAAAAGAATGATTGTCCTTTGTGCTATGTACATATGGTGTATATCCCTA  100
        ||||||| || ||||| |||||||| ||||||||||||||||||||||
seq2  -GAAAAGAACGA-TGTCC-TTGTGCTAAGTACATATGGTGTATATCCCTA  92

seq1  CACATGCTTGTGCATGCACTTGTGCAGAGGCCAAACATCACTGCTGAATG  150
      ||||||| |||||| |||| ||||||||||||||||||||||| ||||||
seq2  CACATGC-TGTGCACGCAC-TGTGCAGAGGCCAAACATCACTGATGAATG  140

seq1  TCTTCTTCCATCATTATCCACTTCATGTTCTTTGTTTTAGGCTTTGTACT  200
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTCTTCCATCATTATCCACTTCATGTTCTTTG-TTTAGGCTTTGTACT  189

seq1  GAACCTCTTGACATTGATTCAATTAGTCTGTTTAGTCAGGAAAATCCAGG  250
      |||||||||| ||||||| ||| ||||  ||| |||||||| ||||||||
seq2  GAACCTCTTGCCATTGATCCAACTAGT-GGTTGAGTCAGGAGAATCCAGG  238

seq1  AAACCCTCTGAATCCTGTTACTTTCTTCTTTCACAGTGCTGAAATTACAG  300
      |||||||||||||||| | ||||| |||| ||||||||| ||||||||||
seq2  AAACCCTCTGAATCCTATGACTTTATTCTGTCACAGTGCCGAAATTACAG  288

seq1  GTATACATCATTGTAGATCTGACATTTTGCAGCATGCTGGGG-CTTGTGT  349
      |||||||||| ||||||| |||||||  ||||||||||||||  ||||||
seq2  GTATACATCACTGTAGATATGACATTACGCAGCATGCTGGGGTTTTGTGT  338

seq1  TGCAAGGTCCTTGTGTGACAGCAAACATTTTACAGGATGAGTCATCTCCT  399
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TGCAAGGTCCTTGTGTGACAGCAAACATTTCACAGGATGAGTCATCTCTT  388

seq1  GTACACAGTATAAGGATTATTGTTTTGTTTCTGGGACTAAGGCTGTTCTG  449
      |||||||||||||||||   ||||| ||||||||||||||||||||||||
seq2  GTACACAGTATAAGGATATCTGTTTCGTTTCTGGGACTAAGGCTGTTCTG  438

seq1  GAAATCAACTAGGATCAAATGTCATAGCCTTTCATCTAATTCAATTGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  GAAATCAACTAGGATCAAATGTCATAGCCTTTCATCTAATTCAATCGCTC  488

seq1  ACAGTAATCTGTAAGAAGAAATACTTAAACCTGAGGCTGACTTTACAGTC  549
      ||||||||||| ||||||||||||||||||||||||||| |||| |||||
seq2  ACAGTAATCTGGAAGAAGAAATACTTAAACCTGAGGCTGGCTTTGCAGTC  538

seq1  TTACCACCTTACTACAACTAAACCCAAAACTCAAAAGACCTTTATAAGTT  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTACCACCTTACTACAACTAAACCCAAAACTCAAAAGACCTTTATAAGGT  588

seq1  GGAAGTGACCTGACCACAAAACCCTGGGTCTTTATGGCAGATTCCATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGACCTGACCACAAAACCCTGGGTCTTTATGGCAGATTCCATCTT  638

seq1  ACAACTGGCTTTTTTATTTGCTAGCGTCTGTCTGTTTACTTTTTTCTTTT  699
      |||||||||||||| ||||||||||||| || ||||||||||||||||||
seq2  ACAACTGGCTTTTTAATTTGCTAGCGTCCGTTTGTTTACTTTTTTCTTTT  688

seq1  TTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGATTGGTAGATTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGATTGGTAGATTAGA  738

seq1  TGCTTTTGGAAACAGAGTCTCCTCTACAGACCAGGCTGCCCCCTAAATAC  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGAAACAGAGTCTCCTCTACAGACCAGGCTGCCCCCTAAATAC  788

seq1  ATCATCAGCTCTTTCTCTCCTTTTCTGTGATTATAGGTTTATGTAGCCAT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCATCAGCTCTTTCTCTCCTTTTCTGCGATTATAGGTTTATGTAGCCAT  838

seq1  GACTAGCAGCCTACAAGCTGTTGAATGATTCATGGCACTTGAGCAGACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCAGCCTACAAGCTGTTGAATGATTCATGGCACTTGAGCAGACAA  888

seq1  CGATGATTTCCCTTCCTGGGGTGAAAACAGTTATGGCTGTGAAATTTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGATGATTTCCCTTCCTGGGGTGAAAACAGTTATGGCTGTGAAATTTGTT  938

seq1  TTCTCTAACATTATTTTCACATATATTACCCTCTATATTTTTTGTTTTGA  999
      || |||||||||||||||||||||| ||||||||||| |||| |||||||
seq2  TTATCTAACATTATTTTCACATATAGTACCCTCTATA-TTTTAGTTTTGA  987

seq1  ATTC  1003
      ||||
seq2  ATTC  991

seq1: chr2_41691182_41692036
seq2: B6Ng01-163E16.g_68_929

seq1  GAATTCTTACACGCTAATTTGATCTTGAAAGGGAAAGCATATTATTATCA  50
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAATCTAATTTGATCTTGAAAGGGAAAGCATATTATTATCA  50

seq1  ATCAACTGTAACCAGCATTGACTTTGAACATTATCCAAATTTTATAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGTAACCAGCATTGACTTTGAACATTATCCAAATTTTATAATGC  100

seq1  ATATTCAGGTAGTTAAAACAGTTGTCAAAAGTAGTCTACTTGAACCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGGTAGTTAAAACAGTTGTCAAAAGTAGTCTACTTGAACCATAG  150

seq1  TCTGTCACTTAATCTCAAAATGCAATTTGTTGTGGTTTACTTGGTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTTAATCTCAAAATGCAATTTGTTGTGGTTTACTTGGTTATTA  200

seq1  TTTTGCATAGCTGCATAGGCTATAGGGGAAGTCAAATATGTCTGGCTGAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGCATAGCTGCATAGGCTATAGGGGGAGTCAAATATGTCTGGCTGAA  250

seq1  TTAGAAGGAACAGAGAAGAACTAGAACTGAAATATTGATTTATAAAACTT  300
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TTAGAAGGAACACAGAATAACTAGAACTGAAATATTGATTTATAAAACTT  300

seq1  AAGTAAAAAGCAACTGGTTTTACATCCTTGATATGGACCGGTAGGTACAA  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGTAAAAAGCAACTGGTTTTACGTCCTTGATATGGACCGGTAGGTACAA  350

seq1  ATTTCATAATACACATCTGATGTAGAACATTGATTCTCAGACCTAATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAATACACATCTGATGTAGAACATTGATTCTCAGACCTAATAAG  400

seq1  CTAAAATTCCCTGCTAAAATTCTGAACAATGTCTGATTTGGTAGATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAAAATTCCCTGCTAAAATTCTGAACAATGTCTGATTTGGCAGATCTGG  450

seq1  AAGAGGGTCTGAAATTCCATATTATAATACATTTTTATATGATGCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTCTGAAATTCCATATTATAATACATTTTTATATGATGCACCAT  500

seq1  ATAGACTATTAGGCTATAGACCACAGCCTAATGGTCCAGGGAGCAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTATTAGGCTATAGACCACAGCCTAATGGTCCAGGGAGCAATATA  550

seq1  CACAATATCCCATGAAGCTCTATAGTTTCTTCTGAATATCCATGAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATCCCATGAAGCTCTATAGTTTCTTCTGAATATCCATGAATATG  600

seq1  GCAATCTAATACAGTCATAGCTATATATTAATTTAATTTTAAATGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTAATACAGTCATAGCTATATATTAATTTAATTTTAAATGAATTA  650

seq1  TTTGAATCTTTTCTACCCA-TTTTTCTTATAGTCAGTATTAGGATGGTGT  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGAATCTTTTCTACCCATTTTTTCTTATAGTCAGTATTAGGATGGTGT  700

seq1  TCTAATAAAAGCTGTGCCATAAAATCAGTAACGTTGTGAAGTGTGGATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAAGCTGTGCCATAAAATCAGTAACGTTGTGAAGTGTGGATAG  750

seq1  GGGGTCTTGTTAATATCTACTCCTACTTCACTGGCCCCTGCTTTCCTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTGTTAATATCTACTCCTACTTCACTGGCCCCTGCTTTCCTAAG  800

seq1  AGCTAAGTATTGCAGGGGCCAATGGTTCCTTTTTTTTTTTT------TTT  843
      |||||||||||||||||||||||||| ||||||||||||||      |||
seq2  AGCTAAGTATTGCAGGGGCCAATGGTCCCTTTTTTTTTTTTCTCTTCTTT  850

seq1  TTTTTTTTTTTT  855
      ||||||||||||
seq2  TTTTTTTTTTTT  862