BAC Information

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BAC

Clone NameB6Ng01-163F18
Chromosome2 (Build37)
Map Location 49,952,712 - 50,155,918
singlet/doubletdoublet
Overlap geneLypd6, 2010311D03Rik
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F18.bB6Ng01-163F18.g
ACCDH955969DH955970
length944611
definitionDH955969|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F18, 5' end.DH955970|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,154,977 - 50,155,918)(49,952,712 - 49,953,322)
sequence
gaattcttgctctttaggtggctaaatgtttccatcaaactccagaaggc
aaggatccttttcttctgatgtgtccagacgttccctgactttctgttct
gccccaaagcaatataccattgttaggaggctgagactgaaggatcatca
gttcaaaaccagcaacaccgtgagacaataaagacagaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaaaggaaga
gaggacaagaggaagacaggaaaggagatgcaggggaggagaaaggaaat
ggggagaagagaaaaaagcaacaataataaagataatttgatacaaaaaa
atttgccagggcgaggggtggggaggatatccaggagggcccccacccga
tcagaggagaagagaagggggaaggattgtgggaagggtgaacgggatgg
tgacagtgaatgggatgtaaaatgaatacagaaaaaataaaattcaatta
aaaaaaaaaaaaggaaacttttctttccatcctaggattgaccagctgta
tcctactatagaagtttagacataaaactgagagaagatgtggagggaac
attttctttatagggtgaagtttttcaacacaccagatgctgttccttag
gaagatcataaaactccccttccctggagaacttttagctagtataaact
gttttttcctgggattgaatattcatttctctagttggctgcaagggtac
cagatattagaagtctgtcacacttacttattttgaacattacttatcat
agaactggacttggatgaaagctctatgtagtccacacttatgatgagtt
attacattagtttgaaattggttgcctgaaaaaaggctcaatctacctaa
aacaattctcaatttattctaaacttacttttgagaaattataa
gaattccatggctgcctttgtcaagtcttccctttcctgcttgacttatg
cggttgggtagaggatcagatgataagtcatgagaatacacttcaagata
ttggccactgtgtgtatgctgggtaccattatctatttggtagcttgtgc
atctccagagatccttctatgcgcaatgattacctatgatggctgactta
ctggctaagccaagactactgatacttgataaatacactcgataagtgtc
tttttccttctggttatcattcttgtagtttaaatcaatgatcactaaca
atgtgggagcccagaagttagtctcccgcatagcgactccttcctctccc
ttttgaaactagcactttatagagcatccttgagaacatttctcttgatg
cccacaggaaggcaggctttcaatgatttttggcagcttttcagtggggt
cttaatagaacaattaatctcttgaggattgacatcctttgaggtggaaa
accttaggccattgatgaactgcaaatcctgggtgttctgacttgaggag
atagagagcttaaaagaaggcagcagggtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50154977_50155918
seq2: B6Ng01-163F18.b_44_987 (reverse)

seq1  TTATAATTTCTCAAAAGTAAGTTTAGAATACATTTGAAGATTGTTATTAG  50
      |||||||||||||||||||||||||||||| | ||||  |||||| ||||
seq2  TTATAATTTCTCAAAAGTAAGTTTAGAATA-AATTGAGAATTGTT-TTAG  48

seq1  GTAGATTGAGCCTTTTTTCAGGCAACC-ATTTCAAACTTATGTAATAACT  99
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GTAGATTGAGCCTTTTTTCAGGCAACCAATTTCAAACTAATGTAATAACT  98

seq1  CATCATAGGTGTTGACAACATAGAGCTTTCATCCATGTCCAGTTACTATG  149
      ||||||| |||| ||| |||||||||||||||||| |||||||| |||||
seq2  CATCATAAGTGTGGACTACATAGAGCTTTCATCCAAGTCCAGTT-CTATG  147

seq1  ATAAGTAATGTTC-AAATAAGTAAGTGTGACAGACTTCTAATATCTGGTA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAATGTTCAAAATAAGTAAGTGTGACAGACTTCTAATATCTGGTA  197

seq1  CCCTTGCAGCCAACTAGAGAAATGAATATTCAATCCCAGG-AAAAACAGA  247
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CCCTTGCAGCCAACTAGAGAAATGAATATTCAATCCCAGGAAAAAACAGT  247

seq1  TTATACTAGCT-AAAGTTCTCCAGGGAAGGGGAG-TTTATGATCTTCCTA  295
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TTATACTAGCTAAAAGTTCTCCAGGGAAGGGGAGTTTTATGATCTTCCTA  297

seq1  AGGAACAGCATCTGGTGTGTTGAAAAACTTCACCCTATAAAGAAAATGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCATCTGGTGTGTTGAAAAACTTCACCCTATAAAGAAAATGTT  347

seq1  CCCTCCACATCTTCTCTCAGTTTTATGTCTAAACTTCTATAGTAGGATAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACATCTTCTCTCAGTTTTATGTCTAAACTTCTATAGTAGGATAC  397

seq1  AGCTGGTCAATCCTAGGATGGAAAGAAAAGTTTCCTTTTTTTTTTTTTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCAATCCTAGGATGGAAAGAAAAGTTTCCTTTTTTTTTTTTTAA  447

seq1  TTGAATTTTATTTTTTCTGTATTCATTTTACATCCCATTCACTGTCCCCA  495
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGAATTTTATTTTTTCTGTATTCATTTTACATCCCATTCACTGTCACCA  497

seq1  TCCCGTTCACCCTTCCCACAATCCTTCCCCCTTCTCTTCTCCTCTGATCG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTCACCCTTCCCACAATCCTTCCCCCTTCTCTTCTCCTCTGATCG  547

seq1  GGTGGGGGCCCTCCTGGATATCCTCCCCACCCCTCGCCCTGGCAAATTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGCCCTCCTGGATATCCTCCCCACCCCTCGCCCTGGCAAATTTT  597

seq1  TTTGTATCAAATTATCTTTATTATTGTTGCTTTTTTCTCTTCTCCCCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCAAATTATCTTTATTATTGTTGCTTTTTTCTCTTCTCCCCATT  647

seq1  TCCTTTCTCCTCCCCTGCATCTCCTTTCCTGTCTTCCTCTTGTCCTCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCTCCCCTGCATCTCCTTTCCTGTCTTCCTCTTGTCCTCTCT  697

seq1  TCCTTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  747

seq1  TTCCTTCCTTCTGTCTTTATTGTCTCACGGTGTTGCTGGTTTTGAACTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCTGTCTTTATTGTCTCACGGTGTTGCTGGTTTTGAACTGA  797

seq1  TGATCCTTCAGTCTCAGCCTCCTAACAATGGTATATTGCTTTGGGGCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTCAGTCTCAGCCTCCTAACAATGGTATATTGCTTTGGGGCAGA  847

seq1  ACAGAAAGTCAGGGAACGTCTGGACACATCAGAAGAAAAGGATCCTTGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTCAGGGAACGTCTGGACACATCAGAAGAAAAGGATCCTTGCC  897

seq1  TTCTGGAGTTTGATGGAAACATTTAGCCACCTAAAGAGCAAGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTTTGATGGAAACATTTAGCCACCTAAAGAGCAAGAATTC  944

seq1: chr2_49952712_49953322
seq2: B6Ng01-163F18.g_68_678

seq1  GAATTCCATGGCTGCCTTTGTCAAGTCTTCCCTTTCCTGCTTGACTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGCTGCCTTTGTCAAGTCTTCCCTTTCCTGCTTGACTTATG  50

seq1  CGGTTGGGTAGAGGATCAGATGATAAGTCATGAGAATACACTTCAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGGTAGAGGATCAGATGATAAGTCATGAGAATACACTTCAAGATA  100

seq1  TTGGCCACTGTGTGTATGCTGGGTACCATTATCTATTTGGTAGCTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACTGTGTGTATGCTGGGTACCATTATCTATTTGGTAGCTTGTGC  150

seq1  ATCTCCAGAGATCCTTCTATGCGCAATGATTACCTATGATGGCTGACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAGATCCTTCTATGCGCAATGATTACCTATGATGGCTGACTTA  200

seq1  CTGGCTAAGCCAAGACTACTGATACTTGATAAATACACTCGATAAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAGCCAAGACTACTGATACTTGATAAATACACTCGATAAGTGTC  250

seq1  TTTTTCCTTCTGGTTATCATTCTTGTAGTTTAAATCAATGATCACTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCTGGTTATCATTCTTGTAGTTTAAATCAATGATCACTAACA  300

seq1  ATGTGGGAGCCCAGAAGTTAGTCTCCCGCATAGCGACTCCTTCCTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGCCCAGAAGTTAGTCTCCCGCATAGCGACTCCTTCCTCTCCC  350

seq1  TTTTGAAACTAGCACTTTATAGAGCATCCTTGAGAACATTTCTCTTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACTAGCACTTTATAGAGCATCCTTGAGAACATTTCTCTTGATG  400

seq1  CCCACAGGAAGGCAGGCTTTCAATGATTTTTGGCAGCTTTTCAGTGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGAAGGCAGGCTTTCAATGATTTTTGGCAGCTTTTCAGTGGGGT  450

seq1  CTTAATAGAACAATTAATCTCTTGAGGATTGACATCCTTTGAGGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGAACAATTAATCTCTTGAGGATTGACATCCTTTGAGGTGGAAA  500

seq1  ACCTTAGGCCATTGATGAACTGCAAATCCTGGGTGTTCTGACTTGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGCCATTGATGAACTGCAAATCCTGGGTGTTCTGACTTGAGGAG  550

seq1  ATAGAGAGCTTAAAAGAAGGCAGCAGGGTGTGTGTGTGTGTGTGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGCTTAAAAGAAGGCAGCAGGGTGTGTGTGTGTGTGTGTGTGTG  600

seq1  TGTGTGTGTGT  611
      |||||||||||
seq2  TGTGTGTGTGT  611