BAC Information

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BAC

Clone NameB6Ng01-163I05
Chromosome2 (Build37)
Map Location 28,585,407 - 28,764,363
singlet/doubletdoublet
Overlap gene1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik
Downstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163I05.bB6Ng01-163I05.g
ACCDH956080DH956081
length960544
definitionDH956080|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I05, 5' end.DH956081|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,763,404 - 28,764,363)(28,585,407 - 28,585,956)
sequence
tctccctcttgtcccgttccccagttcctgggtgttgtagtcatgcttag
gagacttgggctggactcccaggggtctccccgtttccaccccgaggctc
ttggccttctcatctgatttgtcccgtttccacacggtcttaggaggtca
cgggcgaggccaacgctcggcctccctctgctgcgcgacaggccgcgaag
cactcactgagccgactcatctggctcaggccagggcgccggcagctggt
gcccggccctgcgggcgcggggcagacagatggactccgaggctgctccc
cgttgccccaccctcctccgcccggcgccccccgctctggctacccgcag
ctcctagtctctaatgcctggtaggatcccatgggcctttgcgacgccac
gttaggcaaccctttgctctctctccatcctccccttgttccagtcctgg
gagaaataggagcaggggagggggcagatcaaccacccgcctctggctct
gagatttcaggggagtcagactccagatcacgttcaaagggccaaggtca
tctcctgacactggtccgtctcccgggacctgggcgcaggtgctcccctc
ccccacaccacctgcagcacactgacctgcagatggaagaaatgcttggg
agtttggatacttgcaagccaagcaccttcccagcttttctggcctaacc
tgagagaacaaggcagtggagggagggggcgtgttcagaaagacaccccc
ccaaccattttggctactgttttcctcccccacccactagcatccctcgc
acccaggcttttattttctgggatgggggggctattattctaattttgca
aatgcacagcagctaattaagtcaggagcccctcggcttttcaagttctt
ttgcatgtgatgcatgctggaaatccctcgatctggctgtggtggggtgg
tgagggtgac
actatgtagatcaggctaacctcaaaagatccacctgcctctgcctcctg
agtgctgggattacaggcgcatgccaccttgcttggctccaccttagttt
ttgagagagtctctcactgagcctggaacttgccatttcagttcgactgg
ctggccagtgagcccctgaaatccttttgttttgagttcatcagagctgg
ggttttaggcacaccctgactttttatgtgtatcctggggaattcaggct
tggcccccaagtttgtagagcagagttttgatcccagggaaagacgccat
tcgctctccatcttgtaagtcaggatgtggggtgtagtctcaccctgtca
gcccatcttgaccacagagacactgactctttaggatacctgggagggtc
tctgagaagcagagggcttcttctgcctccctacactgtgagatgaactc
aaagcagtttgcttactttcactcttacaaaggtcactactgctttatct
gagttccaaatctaaaggtgtagttgtgtgtgtgtgtagttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28763404_28764363
seq2: B6Ng01-163I05.b_51_1010 (reverse)

seq1  GTCCCCCTCA-CACCCCACCACAGCCAGATCGAGGGATTTACCAGCCTGC  49
      ||| |||||| ||||||||||||||||||||||||||||| ||||| |||
seq2  GTCACCCTCACCACCCCACCACAGCCAGATCGAGGGATTT-CCAGCATGC  49

seq1  ATTCACATGCAAAAGAACTTG-AAAGCCGAGGGGCTCCTTGACTTAATTA  98
      | ||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  A-TCACATGCAAAAGAACTTGAAAAGCCGAGGGGCTCC-TGACTTAATTA  97

seq1  GCTGCTGTGCATTTTGCAAAATTAGAATAATAGCCCCACCATCCCAGAAA  148
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  GCTGCTGTGCA-TTTGCAAAATTAGAATAATAGCCCCCCCATCCCAGAAA  146

seq1  ATAAAAGCCTGGGTGCGA-GGATGCTAGTGGGTGGGGGAGG-AAACAGTA  196
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  ATAAAAGCCTGGGTGCGAGGGATGCTAGTGGGTGGGGGAGGAAAACAGTA  196

seq1  GCCAAAATGGTTGGGGGGGTGTCTTTCTGAACACGCCCCCTCCCTCCACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATGGTTGGGGGGGTGTCTTTCTGAACACGCCCCCTCCCTCCACT  246

seq1  GCCTTGTTCTCTCAGGTTAGGCCAGAAAAGCTGGGAAGGTGCTTGGCTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTCTCAGGTTAGGCCAGAAAAGCTGGGAAGGTGCTTGGCTTG  296

seq1  CAAGTATCCAAACTCCCAAGCATTTCTTCCATCTGCAGGTCAGTGTGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCCAAACTCCCAAGCATTTCTTCCATCTGCAGGTCAGTGTGCTG  346

seq1  CAGGTGGTGTGGGGGAGGGGAGCACCTGCGCCCAGGTCCCGGGAGACGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGTGGGGGAGGGGAGCACCTGCGCCCAGGTCCCGGGAGACGGA  396

seq1  CCAGTGTCAGGAGATGACCTTGGCCCTTTGAACGTGATCTGGAGTCTGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCAGGAGATGACCTTGGCCCTTTGAACGTGATCTGGAGTCTGAC  446

seq1  TCCCCTGAAATCTCAGAGCCAGAGGCGGGTGGTTGATCTGCCCCCTCCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAAATCTCAGAGCCAGAGGCGGGTGGTTGATCTGCCCCCTCCCC  496

seq1  TGCTCCTATTTCTCCCAGGACTGGAACAAGGGGAGGATGGAGAGAGAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTATTTCTCCCAGGACTGGAACAAGGGGAGGATGGAGAGAGAGCA  546

seq1  AAGGGTTGCCTAACGTGGCGTCGCAAAGGCCCATGGGATCCTACCAGGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGCCTAACGTGGCGTCGCAAAGGCCCATGGGATCCTACCAGGCA  596

seq1  TTAGAGACTAGGAGCTGCGGGTAGCCAGAGCGGGGGGCGCCGGGCGGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACTAGGAGCTGCGGGTAGCCAGAGCGGGGGGCGCCGGGCGGAGG  646

seq1  AGGGTGGGGCAACGGGGAGCAGCCTCGGAGTCCATCTGTCTGCCCCGCGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGCAACGGGGAGCAGCCTCGGAGTCCATCTGTCTGCCCCGCGC  696

seq1  CCGCAGGGCCGGGCACCAGCTGCCGGCGCCCTGGCCTGAGCCAGATGAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGGCCGGGCACCAGCTGCCGGCGCCCTGGCCTGAGCCAGATGAGT  746

seq1  CGGCTCAGTGAGTGCTTCGCGGCCTGTCGCGCAGCAGAGGGAGGCCGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCAGTGAGTGCTTCGCGGCCTGTCGCGCAGCAGAGGGAGGCCGAGC  796

seq1  GTTGGCCTCGCCCGTGACCTCCTAAGACCGTGTGGAAACGGGACAAATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTCGCCCGTGACCTCCTAAGACCGTGTGGAAACGGGACAAATCA  846

seq1  GATGAGAAGGCCAAGAGCCTCGGGGTGGAAACGGGGAGACCCCTGGGAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAGGCCAAGAGCCTCGGGGTGGAAACGGGGAGACCCCTGGGAGT  896

seq1  CCAGCCCAAGTCTCCTAAGCATGACTACAACACCCAGGAACTGGGGAACG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAGTCTCCTAAGCATGACTACAACACCCAGGAACTGGGGAACG  946

seq1  GGACAAGAGGGAGA  960
      ||||||||||||||
seq2  GGACAAGAGGGAGA  960

seq1: chr2_28585407_28585956
seq2: B6Ng01-163I05.g_68_617

seq1  GAATTCACTATGTAGATCAGGCTAACCTCAAAAGATCCACCTGCCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTAACCTCAAAAGATCCACCTGCCTCTGC  50

seq1  CTCCTGAGTGCTGGGATTACAGGCGCATGCCACCTTGCTTGGCTCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGTGCTGGGATTACAGGCGCATGCCACCTTGCTTGGCTCCACCT  100

seq1  TAGTTTTTGAGAGAGTCTCTCACTGAGCCTGGAACTTGCCATTTCAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGAGAGAGTCTCTCACTGAGCCTGGAACTTGCCATTTCAGTTC  150

seq1  GACTGGCTGGCCAGTGAGCCCCTGAAATCCTTTTGTTTTGAGTTCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTGGCCAGTGAGCCCCTGAAATCCTTTTGTTTTGAGTTCATCAG  200

seq1  AGCTGGGGTTTTAGGCACACCCTGACTTTTTATGTGTATCCTGGGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGTTTTAGGCACACCCTGACTTTTTATGTGTATCCTGGGGAATT  250

seq1  CAGGCTTGGCCCCCAAGTTTGTAGAGCAGAGTTTTGATCCCAGGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGCCCCCAAGTTTGTAGAGCAGAGTTTTGATCCCAGGGAAAGA  300

seq1  CGCCATTCGCTCTCCATCTTGTAAGTCAGGATGTGGGGTGTAGTCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATTCGCTCTCCATCTTGTAAGTCAGGATGTGGGGTGTAGTCTCACC  350

seq1  CTGTCAGCCCATCTTGACCACAGAGACACTGACTCTTTAGGATACCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCCCATCTTGACCACAGAGACACTGACTCTTTAGGATACCTGGG  400

seq1  AGGGTCTCTGAGAAGCAGAGGGCTTCTTCTGCCTCCCTACACTGTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTGAGAAGCAGAGGGCTTCTTCTGCCTCCCTACACTGTGAGAT  450

seq1  GAACTCAAAGCAGTTTGCTTACTTTCACTCTTACAAAGGTCACTACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAAGCAGTTTGCTTACTTTCACTCTTACAAAGGTCACTACTGCT  500

seq1  TTATCTGAGTTCCAAATCTAAAGGTGTAGTTGTGTGTGTGTGTAGTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAGTTCCAAATCTAAAGGTGTAGTTGTGTGTGTGTGTAGTTGTG  550