BAC Information

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BAC

Clone NameB6Ng01-163J16
Chromosome2 (Build37)
Map Location 143,594,647 - 143,706,549
singlet/doubletdoublet
Overlap genePcsk2, Bfsp1, LOC100043799, LOC100043534
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneDstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J16.bB6Ng01-163J16.g
ACCDH956148DH956149
length9621,135
definitionDH956148|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J16, 5' end.DH956149|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,594,647 - 143,595,605)(143,705,397 - 143,706,549)
sequence
gaattcaagagtaaaagagtaaaagtagacttaaaggagcttagagaggt
ctataatagtcaataacttcacgggcaggatttttctgctatggttttgt
tcttatggtcccaaaccacttttatagggcaacccctttctgtttttagg
gataatttatcaggctgcctcatgagtagtgtcagacagaggtgtgatta
catgtcctccaaggtgccaagtcaccctgcctccacatttgcactcaaaa
tggtgtcacaaatgcttgtaatatgaaggcacccagggcaaagcagggcc
ctcagacactcttttgtccaatatcaagtcacttagagcaaagaagctag
atctcaaatttttgcctgactgagtaaaggattatgggaacctctgtttg
ttgtttcccattgtcagtgcttccataggtagcaatacaattgctttctc
atgtggcctcgggagatcccagggcatacactcctcaaagaattcaaggg
accaaaacatctgtacaaaccagctcacaggcatatatcccagagtcttt
aacaagccctgtgaggcggaaatggtcttttcccttaaggaggagtcctg
gcattggtctcacagctgtcctgtcattgacatgagtgacacctggtcat
cttttcatgcatggtgcaatgatttctactctttcaaggactcagccttg
acacctaccaaacttaatcagactccaaaaaagttccgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgttgtggaaactgagaaagctgaagtcagaggaat
aaggagattagtcactggaaatttagggaggatgaggaagaggaggcaca
ataagccggtttggatgaatagtactaaaatatactatatatgaaaattc
tagtggtgcacatcatacaagggaaacttacagtccacaataatttgtta
tataatttataa
gaattccaagggaggtcattaagattggcagcaagcatctttacccacta
ggccttttccttggccccaattttctttatgtagcaccgtgtctttcatc
taatatttgaactttccctcatattttgtttagtcctaaacgttgcttat
gggtttttttttttccaggcagcacatttacaaaaaaaaaaaaaaaaaaa
aaaagtaacggtgaagcctatcagtttttttcttttttaaaatttatttt
tatttatataagtacactgtagctgtcttcaaacacaccagaagagggca
tgagatctcattatggatggttgtgagccaccatgtggttgctgggattt
gaactcaggacctctggaagaacaggcagtgcttttaaccactgagccat
ctctccatgtctcagccttttccttatcaaagctcctcgatagtcattta
ttgtagcagtgatgaccacacgtatgaattctgctcttttttacataaaa
aggacacaaacaacctcagaagcaataggtgtagttctctgctttggatg
gagcttacagtgctagtaatggttttagcatttgcctctctgtctggatg
catgggaaagtcttatcatgttatttgtcctaaagccttgtctggtttca
gttgctggggaaacctgttattcagctgctaaaagcttagaaattttgga
ggaaagagggatggtttcttttttcatgaatgcttggctgaaacatggca
ctgtgaaaaatgaatacagctttagcttcaagtgataagcatcaaagagg
aagtgaaaggctcaaagtagactgagcatttaaactccacatattatccc
caattctgtgttgatctgatgaaagctatgaaaaggttttaaaagtggca
tatttattttcttgcctttattacctccatccaaaacaatacagagaact
ggacttgaagctcatggcaggtagttgcctggtatgggcaaaccctgggt
cgatccccacaataacaaaataagaatactaacctaaaccagctaaatga
actttggttgttgtgggtgccttaacttccctggagggttggccattaaa
cactcagcatacatcataaaaatactaatcggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143594647_143595605
seq2: B6Ng01-163J16.b_40_1001

seq1  GAATTCAAGAGTAAAAGAGTAAAAGTAGACTTAAAGGAGCTTAGAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGTAAAAGAGTAAAAGTAGACTTAAAGGAGCTTAGAGAGGT  50

seq1  CTATAATAGTCAATAACTTCACGGGCAGGATTTTTCTGCTATGGTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATAGTCAATAACTTCACGGGCAGGATTTTTCTGCTATGGTTTTGT  100

seq1  TCTTATGGTCCCAAACCACTTTTATAGGGCAACCCCTTTCTGTTTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGTCCCAAACCACTTTTATAGGGCAACCCCTTTCTGTTTTTAGG  150

seq1  GATAATTTATCAGGCTGCCTCATGAGTAGTGTCAGACAGAGGTGTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTATCAGGCTGCCTCATGAGTAGTGTCAGACAGAGGTGTGATTA  200

seq1  CATGTCCTCCAAGGTGCCAAGTCACCCTGCCTCCACATTTGCACTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCCAAGGTGCCAAGTCACCCTGCCTCCACATTTGCACTCAAAA  250

seq1  TGGTGTCACAAATGCTTGTAATATGAAGGCACCCAGGGCAAAGCAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCACAAATGCTTGTAATATGAAGGCACCCAGGGCAAAGCAGGGCC  300

seq1  CTCAGACACTCTTTTGTCCAATATCAAGTCACTTAGAGCAAAGAAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACTCTTTTGTCCAATATCAAGTCACTTAGAGCAAAGAAGCTAG  350

seq1  ATCTCAAATTTTTGCCTGACTGAGTAAAGGATTATGGGAACCTCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATTTTTGCCTGACTGAGTAAAGGATTATGGGAACCTCTGTTTG  400

seq1  TTGTTTCCCATTGTCAGTGCTTCCATAGGTAGCAATACAATTGCTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCATTGTCAGTGCTTCCATAGGTAGCAATACAATTGCTTTCTC  450

seq1  ATGTGGCCTCGGGAGATCCCAGGGCATACACTCCTCAAAGAATTCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCTCGGGAGATCCCAGGGCATACACTCCTCAAAGAATTCAAGGG  500

seq1  ACCAAAACATCTGTACAAACCAGCTCACAGGCATATATCCCAGAGTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACATCTGTACAAACCAGCTCACAGGCATATATCCCAGAGTCTTT  550

seq1  AACAAGCCCTGTGAGGCGGAAATGGTCTTTTCCCTTAAGGAGGAGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCTGTGAGGCGGAAATGGTCTTTTCCCTTAAGGAGGAGTCCTG  600

seq1  GCATTGGTCTCACAGCTGTCCTGTCATTGACATGAGTGACACCTGGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTCTCACAGCTGTCCTGTCATTGACATGAGTGACACCTGGTCAT  650

seq1  CTTTTCATGCATGGTGCAATGATTTCTACTCTTTCAAGGACTCAGCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGCATGGTGCAATGATTTCTACTCTTTCAAGGACTCAGCCTTG  700

seq1  ACACCTACCAAACTTAATCAGACTCCAAAAAAGTTCCGTGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACCAAACTTAATCAGACTCCAAAAAAGTTCCGTGTGTGTGTGTG  750

seq1  TGTGTGTGTGTGTGTGTTGTGGAAACTGAGAAAGCTGAAGTCAGAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTTGTGGAAACTGAGAAAGCTGAAGTCAGAGGAAT  800

seq1  AAGGAGATTAGTCACTGG-AAGTTAGGGAGGATGAGGAAGAGGAGGCAC-  848
      |||||||||||||||||| || ||||||||||||||||||||||||||| 
seq2  AAGGAGATTAGTCACTGGAAATTTAGGGAGGATGAGGAAGAGGAGGCACA  850

seq1  AGAAGCCGG-TTGGATGAATAGTACTAAAATATACTATATAGGAAAAGTC  897
      | ||||||| ||||||||||||||||||||||||||||||| ||||| | 
seq2  ATAAGCCGGTTTGGATGAATAGTACTAAAATATACTATATATGAAAA-TT  899

seq1  CTAGTGGTCCACAGCATAGAAGGGAAAC-TACAGTCCACAATAATTTGTT  946
      |||||||| |||| |||| ||||||||| |||||||||||||||||||||
seq2  CTAGTGGTGCACATCATACAAGGGAAACTTACAGTCCACAATAATTTGTT  949

seq1  ATATATTTTATAA  959
      ||||| |||||||
seq2  ATATAATTTATAA  962

seq1: chr2_143705397_143706549
seq2: B6Ng01-163J16.g_69_1203 (reverse)

seq1  CATCTCGATTAGTGTTCTTTAGTGATGTATGCCTGATTGTTTTAATGGAC  50
      |||| |||||||| || |||| ||||||||| |||| || |||||||| |
seq2  CATC-CGATTAGTATT-TTTA-TGATGTATG-CTGAGTG-TTTAATGG-C  44

seq1  CAACCCTCCAGAGAAGCTAAGGCAACAACAACAAACCAAAGCTCATTTAT  100
      ||||||||||| |||| ||||||| | ||||| |||||||| ||||||| 
seq2  CAACCCTCCAGGGAAGTTAAGGCACCCACAAC-AACCAAAGTTCATTTA-  92

seq1  GCTGGTTTTAGTTTAGTTATCTTATTTTTGTAATGTTGGGGATCGAACCC  150
      ||||| ||||| |||||  ||||| |||||| ||  ||||||||| ||||
seq2  GCTGG-TTTAGGTTAGTATTCTTA-TTTTGTTATTGTGGGGATCG-ACCC  139

seq1  AAGGGGTTTTGCCCATACCAGGCAACTACCTTGCCATTGAGCTTCAAGTC  200
      |   || ||||||||||||||||||||||| ||||| |||||||||||||
seq2  A---GGGTTTGCCCATACCAGGCAACTACC-TGCCA-TGAGCTTCAAGTC  184

seq1  CAGTTCCTCTGTATTGTTTTGGATGGAGGTAAT-AAGGCAAGAAATAAAG  249
      ||||| ||||||||||||||||||||||||||| |||||||||||  || 
seq2  CAGTT-CTCTGTATTGTTTTGGATGGAGGTAATAAAGGCAAGAAAATAAA  233

seq1  TATGCCACTTTTAAAACCTTTTACATAAGCTTTCATCAGATCAACACAGA  299
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TATGCCACTTTTAAAACCTTTT-CAT-AGCTTTCATCAGATCAACACAGA  281

seq1  ATTGGGGATAATATGTGGAGTTTAAATGCTCAGTCTACTTTGAGCCTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGATAATATGTGGAGTTTAAATGCTCAGTCTACTTTGAGCCTTTC  331

seq1  ACTTCCTCTTTGATGCTTATCACTTGAAGCTAAAGCTGTATTCATTTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTTTGATGCTTATCACTTGAAGCTAAAGCTGTATTCATTTTTC  381

seq1  ACAGTGCCATGTTTCAGCCAAGCATTCATGAAAAAAGAAACCATCCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCATGTTTCAGCCAAGCATTCATGAAAAAAGAAACCATCCCTCT  431

seq1  TTCCTCCAAAATTTCTAAGCTTTTAGCAGCTGAATAACAGGTTTCCCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAAAATTTCTAAGCTTTTAGCAGCTGAATAACAGGTTTCCCCAG  481

seq1  CAACTGAAACCAGACAAGGCTTTAGGACAAATAACATGATAAGACTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAACCAGACAAGGCTTTAGGACAAATAACATGATAAGACTTTCC  531

seq1  CATGCATCCAGACAGAGAGGCAAATGCTAAAACCATTACTAGCACTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCCAGACAGAGAGGCAAATGCTAAAACCATTACTAGCACTGTAA  581

seq1  GCTCCATCCAAAGCAGAGAACTACACCTATTGCTTCTGAGGTTGTTTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATCCAAAGCAGAGAACTACACCTATTGCTTCTGAGGTTGTTTGTG  631

seq1  TCCTTTTTATGTAAAAAAGAGCAGAATTCATACGTGTGGTCATCACTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATGTAAAAAAGAGCAGAATTCATACGTGTGGTCATCACTGCT  681

seq1  ACAATAAATGACTATCGAGGAGCTTTGATAAGGAAAAGGCTGAGACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATGACTATCGAGGAGCTTTGATAAGGAAAAGGCTGAGACATGG  731

seq1  AGAGATGGCTCAGTGGTTAAAAGCACTGCCTGTTCTTCCAGAGGTCCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGTGGTTAAAAGCACTGCCTGTTCTTCCAGAGGTCCTGA  781

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGAT  831

seq1  CTCATGCCCTCTTCTGGTGTGTTTGAAGACAGCTACAGTGTACTTATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCCTCTTCTGGTGTGTTTGAAGACAGCTACAGTGTACTTATATA  881

seq1  AATAAAAATAAATTTTAAAAAAGAAAAAAACTGATAGGCTTCACCGTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAAATTTTAAAAAAGAAAAAAACTGATAGGCTTCACCGTTAC  931

seq1  TTTTTTTTTTTTTTTTTTTTTTTGTAAATGTGCTGCCTGGAAAAAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTGTAAATGTGCTGCCTGGAAAAAAAAAA  981

seq1  ACCCATAAGCAACGTTTAGGACTAAACAAAATATGAGGGAAAGTTCAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAGCAACGTTTAGGACTAAACAAAATATGAGGGAAAGTTCAAAT  1031

seq1  ATTAGATGAAAGACACGGTGCTACATAAAGAAAATTGGGGCCAAGGAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATGAAAGACACGGTGCTACATAAAGAAAATTGGGGCCAAGGAAAA  1081

seq1  GGCCTAGTGGGTAAAGATGCTTGCTGCCAATCTTAATGACCACCCTTGGA  1149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCCTAGTGGGTAAAGATGCTTGCTGCCAATCTTAATGACCTCCCTTGGA  1131

seq1  ATTC  1153
      ||||
seq2  ATTC  1135