BAC Information

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BAC

Clone NameB6Ng01-163L02
Chromosome2 (Build37)
Map Location 73,706,991 - 73,821,458
singlet/doubletdoublet
Overlap geneAtf2, Atp5g3, LOC667729
Upstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneLOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L02.bB6Ng01-163L02.g
ACCDH956216DH956217
length1,0711,171
definitionDH956216|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L02, 5' end.DH956217|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,706,991 - 73,708,067)(73,820,287 - 73,821,458)
sequence
gaattcttaacaaatgtggtaaggatgctgaagagtagctctccacagct
gaggaaggactcagttttaaggagctgattatcaggagtctgatcacgct
cccatgagtataagcgtaacacaaattggggggggggttttctctctttt
ccttttttttggggggaaggggtccagaaagatggggagtggaccttgga
ggactaggaattaagtgtgatctgggttcctaatgtatataagacttaaa
taattaataaaaatattatggaaagaaaaataatgtctgtacctcaaaat
ctactgttataagtatcgttctgttgtattttttttgaatcaaggtctca
tgtagaccaggccagccagctttgagtgcctgatgctgacagcttctttt
atttacttatcttctttcttttctttttttttgtttttctagacagggtt
tctgtgtatatccctggctgtcctggaacttactttgtagaccaggctgg
ccttgaactcagaaatctacctgcctttgcctcctgagtgctgggattaa
aggcatgcaccaccacgtccggccatttacttatttttttaagtgtatat
atttttttctttcttttttgaaaccaatgtagaccatgctggtctggaac
tcatgtaaactgcctgccaccacgtctggtccttatgcttattttttaat
ttgattcttttgagaactggaacacaaatactgtatttcaccctttcccc
taactctcctctaactctttctgttttcacccccacttcaaatttatttt
attttatttatttatttatttatttattattattattttaaagatttatt
tatttattaaatgtaagtacactgtaatctgtcttcaaacactccagaaa
atggcgtcagatcttgtacagatggttgtgagccaccatgtggtgccggg
gattggactccggacttcggaagacagtcgggttgtccttaccactgagc
attcaccatcccccaattattttattggtattttgtttttgctttctcaa
caagggtttctctgtgtagca
gaattctgtgaactctgagaaggaggaaaaggttaatcgttaacagtccc
atgcttgtgtcacttacagctcttaccactggattctctctgtctaacac
cctttcagcggtagcatttagcacattgagaccagactgaattttttatt
gcagacttcaataagacacggggtgagtttaaaaaaggccatctttaaga
tttatccatgtgtcctggaataagggttcagtaattccttcagtccatgt
tgtcatctcccttggctttacgctttgcgttagtctcttaacatcacacc
gtattttaacagcaatcatcacaacacaagtagcgctagcaagatctcca
gtctaagccttgaaaggagggcctgctacatctacattgttacttctaat
gaggtcatctatctcaaaaaaaaaaaaaaataaactgtgtacgtcccaac
tgttttctgtaacttgtgtctctataattcacttttaaaattctctgaca
ataaaccaaagggaccaattggataaattgtgttttgaaaaggaattagt
ctcatccaatattcctttaacactggttgaagcattagacatgaacctgc
aaatgtaccataaaaataattgaaattaataagcagggacaactgaagta
agagttgagctttaaatagaattcacaggctccactttcttctgggaact
ttaaaactacatcagttggtgatctatctgtgtgtgtgcccttagatatc
actaattcttagtgagcactgcgattgattttctacttcaaaagatggga
cataaaagcttcatttctagaacattcagtgttttgaccaacagcattac
atttcctgaaatgtcaaaaatatcctatacctacgtatgtctagatactc
atcaaatgagatttagtggctcacttgcttgaaaacaatgtgagtcttta
catgctagaagtaacctaacagaatcatttgtttttaattcaacagcttg
tcccaaaactgggtccctgtgcatgatgagatgtgatggtgcatcggaaa
taatggccatctctagagcttataacttagttaattttattaattccatg
ttttcctagaatctattaatccactattctgaaacagcctttaaaacagc
agttctacacctgtgagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73706991_73708067
seq2: B6Ng01-163L02.b_44_1113

seq1  GAATTCTTAACAAATGTGGTAAGGATGCTGAAGAGTAGCTCTCCACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAATGTGGTAAGGATGCTGAAGAGTAGCTCTCCACAGCT  50

seq1  GAGGAAGGACTCAGTTTTAAGGAGCTGATTATCAGGAGTCTGATCACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGACTCAGTTTTAAGGAGCTGATTATCAGGAGTCTGATCACGCT  100

seq1  CCCATGAGTATAAGCGTAACACAAATTGGGGGGGGGGTTTTCTCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGTATAAGCGTAACACAAATTGGGGGGGGGGTTTTCTCTCTTTT  150

seq1  CCTTTTTTTTGGGGGGAAGGGGTCCAGAAAGATGGGGAGTGGACCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTGGGGGGAAGGGGTCCAGAAAGATGGGGAGTGGACCTTGGA  200

seq1  GGACTAGGAATTAAGTGTGATCTGGGTTCCTAATGTATATAAGACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGAATTAAGTGTGATCTGGGTTCCTAATGTATATAAGACTTAAA  250

seq1  TAATTAATAAAAATATTATGGAAAGAAAAATAATGTCTGTACCTCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATAAAAATATTATGGAAAGAAAAATAATGTCTGTACCTCAAAAT  300

seq1  CTACTGTTATAAGTATCGTTCTGTTGTATTTTTTTTGAATCAAGGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTATAAGTATCGTTCTGTTGTATTTTTTTTGAATCAAGGTCTCA  350

seq1  TGTAGACCAGGCCAGCCAGCTTTGAGTGCCTGATGCTGACAGCTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCCAGCCAGCTTTGAGTGCCTGATGCTGACAGCTTCTTTT  400

seq1  ATTTACTTATCTTCTTTCTTTTCTTTTTTTTTGTTTTTCTAGACAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATCTTCTTTCTTTTCTTTTTTTTTGTTTTTCTAGACAGGGTT  450

seq1  TCTGTGTATATCCCTGGCTGTCCTGGAACTTACTTTGTAGACCAGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATATCCCTGGCTGTCCTGGAACTTACTTTGTAGACCAGGCTGG  500

seq1  CCTTGAACTCAGAAATCTACCTGCCTTTGCCTCCTGAGTGCTGGGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCAGAAATCTACCTGCCTTTGCCTCCTGAGTGCTGGGATTAA  550

seq1  AGGCATGCACCACCACGTCCGGCCATTTACTTATTTTTTTAAGTGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCACCACCACGTCCGGCCATTTACTTATTTTTTTAAGTGTATAT  600

seq1  ATTTTTTTCTTTCTTTTTTGAAACCAATGTAGACCATGCTGGTCTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTTCTTTTTTGAAACCAATGTAGACCATGCTGGTCTGGAAC  650

seq1  TCATGTAAACTGCCTGCCACCACGTCTGGTCCTTATGCTTA-TTTTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATGTAAACTGCCTGCCACCACGTCTGGTCCTTATGCTTATTTTTTAAT  700

seq1  TTGATTCTTTTGAGAACTGGAACACAAATACTGTATTTCACCC-TTCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGATTCTTTTGAGAACTGGAACACAAATACTGTATTTCACCCTTTCCCC  750

seq1  TAACTCTCCTCTAACTCTTTCTGTTTTCACCCCCACTTCAAATTTATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TAACTCTCCTCTAACTCTTTCTGTTTTCACCCCCACTTCAAATTTATT--  798

seq1  TTTATTTATTTATTTATTTATTTATTTATT-TATTTATTTTAAAGATTTA  847
      ||  |||||||||||||||||||||||||| |  ||||||||||||||||
seq2  TTATTTTATTTATTTATTTATTTATTTATTATTATTATTTTAAAGATTTA  848

seq1  TTTATTTATTATATGTAAGTACACTGT-AGCTGTCTTCAGACACTCCAGA  896
      ||||||||||| ||||||||||||||| | ||||||||| ||||||||||
seq2  TTTATTTATTAAATGTAAGTACACTGTAATCTGTCTTCAAACACTCCAGA  898

seq1  AGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGC  946
      | | |||||||||||||| ||||||||||||||||||||||||||| |||
seq2  AAATGGCGTCAGATCTTG-TACAGATGGTTGTGAGCCACCATGTGG-TGC  946

seq1  TGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCA  996
       |||  ||| |||||||| |||||||||| |||||||||  || |  |||
seq2  CGGGGATTGGACTCCGGA-CTTCGGAAGA-CAGTCGGGTTGTCCTTACCA  994

seq1  CTGAGCCATCTCACCAGCCCCCAAATTTATTTTTTTGTTTTTTTGTTTTT  1046
      ||||| ||| |||||| |||||||  ||||||| ||| | ||||||||||
seq2  CTGAG-CAT-TCACCATCCCCCAA--TTATTTTATTGGTATTTTGTTTTT  1040

seq1  GCTTTTGCGAGACAGGGTTTCTCTGTGTAGC  1077
      |||||  | | | ||||||||||||||||||
seq2  GCTTTCTCAACA-AGGGTTTCTCTGTGTAGC  1070

seq1: chr2_73820287_73821458
seq2: B6Ng01-163L02.g_67_1237 (reverse)

seq1  AATGCT--CAGGTTGAGAACTGCTGTTTTAGAGGCTGGTTTCAGGAATAG  48
      ||||||  |||||  ||||||||||||||| ||||| |||||| ||||||
seq2  AATGCTCACAGGTGTAGAACTGCTGTTTTAAAGGCT-GTTTCA-GAATAG  48

seq1  TGGATTAATAGATTTCTAAGGAAAACATGGAATT-ATAAAATTATACTAA  97
      |||||||||||| |||| |||||||||||||||| ||||||||| |||||
seq2  TGGATTAATAGA-TTCT-AGGAAAACATGGAATTAATAAAATTA-ACTAA  95

seq1  G-TATAAGCTTCTAGAGATGGCCATTATTTCCGATGCA-CATCACATCTC  145
      | ||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  GTTATAAGC-TCTAGAGATGGCCATTATTTCCGATGCACCATCACATCTC  144

seq1  ATCATGCACAGAGACCCAGTTTTGGGACAAGCTTGTGAATTAAAAACAAA  195
      ||||||||||| |||||||||||||||||||||  |||||||||||||||
seq2  ATCATGCACAGGGACCCAGTTTTGGGACAAGCTGTTGAATTAAAAACAAA  194

seq1  TGATTCTGTTAGGTTACTTCTAGCATTGTAAAGACTCACATTGTTTTCAA  245
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATTCTGTTAGGTTACTTCTAGCA-TGTAAAGACTCACATTGTTTTCAA  243

seq1  GC-AGTGAGCCACTCAAATCTCATTTGATGAGTATCTAGACATACGTAGG  294
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAGCCACT-AAATCTCATTTGATGAGTATCTAGACATACGTAGG  292

seq1  TATAGGATATTTTTGACATTTCAGGAAATGTAATGCTGTTGGTC-AAACA  343
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATAGGATATTTTTGACATTTCAGGAAATGTAATGCTGTTGGTCAAAACA  342

seq1  CTGAATGTTCTAGAAATGAAGCTTTTATGTCCCATCTTTTGAAGTAGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTCTAGAAATGAAGCTTTTATGTCCCATCTTTTGAAGTAGAAA  392

seq1  ATCAATCGCAGTGCTCACTAAGAATTAGTGATATCTAAGGGCACACACAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCGCAGTGCTCACTAAGAATTAGTGATATCTAAGGGCACACACAC  442

seq1  AGATAGATCACCAACTGATGTAGTTTTAAAGTTCCCAGAAGAAAGTGGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATCACCAACTGATGTAGTTTTAAAGTTCCCAGAAGAAAGTGGAG  492

seq1  CCTGTGAATTCTATTTAAAGCTCAACTCTTACTTCAGTTGTCCCTGCTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATTCTATTTAAAGCTCAACTCTTACTTCAGTTGTCCCTGCTTA  542

seq1  TTAATTTCAATTATTTTTATGGTACATTTGCAGGTTCATGTCTAATGCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAATTATTTTTATGGTACATTTGCAGGTTCATGTCTAATGCTT  592

seq1  CAACCAGTGTTAAAGGAATATTGGATGAGACTAATTCCTTTTCAAAACAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTGTTAAAGGAATATTGGATGAGACTAATTCCTTTTCAAAACAC  642

seq1  AATTTATCCAATTGGTCCCTTTGGTTTATTGTCAGAGAATTTTAAAAGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCCAATTGGTCCCTTTGGTTTATTGTCAGAGAATTTTAAAAGTG  692

seq1  AATTATAGAGACACAAGTTACAGAAAACAGTTGGGACGTACACAGTTTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAGACACAAGTTACAGAAAACAGTTGGGACGTACACAGTTTAT  742

seq1  TTTTTTTTTTTTTTGAGATAGATGACCTCATTAGAAGTAACAATGTAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGATAGATGACCTCATTAGAAGTAACAATGTAGAT  792

seq1  GTAGCAGGCCCTCCTTTCAAGGCTTAGACTGGAGATCTTGCTAGCGCTAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGCCCTCCTTTCAAGGCTTAGACTGGAGATCTTGCTAGCGCTAC  842

seq1  TTGTGTTGTGATGATTGCTGTTAAAATACGGTGTGATGTTAAGAGACTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTGATGATTGCTGTTAAAATACGGTGTGATGTTAAGAGACTAA  892

seq1  CGCAAAGCGTAAAGCCAAGGGAGATGACAACATGGACTGAAGGAATTACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAGCGTAAAGCCAAGGGAGATGACAACATGGACTGAAGGAATTACT  942

seq1  GAACCCTTATTCCAGGACACATGGATAAATCTTAAAGATGGCCTTTTTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTATTCCAGGACACATGGATAAATCTTAAAGATGGCCTTTTTTA  992

seq1  AACTCACCCCGTGTCTTATTGAAGTCTGCAATAAAAAATTCAGTCTGGTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCCCGTGTCTTATTGAAGTCTGCAATAAAAAATTCAGTCTGGTC  1042

seq1  TCAATGTGCTAAATGCTACCGCTGAAAGGGTGTTAGACAGAGAGAATCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGCTAAATGCTACCGCTGAAAGGGTGTTAGACAGAGAGAATCCA  1092

seq1  GTGGTAAGAGCTGTAAGTGACACAAGCATGGGACTGTTAACGATTAACCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGAGCTGTAAGTGACACAAGCATGGGACTGTTAACGATTAACCT  1142

seq1  TTTCCTCCTTCTCAGAGTTCACAGAATTC  1172
      |||||||||||||||||||||||||||||
seq2  TTTCCTCCTTCTCAGAGTTCACAGAATTC  1171