BAC Information

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BAC

Clone NameB6Ng01-164A03
Chromosome2 (Build37)
Map Location 107,000,554 - 107,138,787
singlet/doubletdoublet
Overlap geneKcna4
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164A03.bB6Ng01-164A03.g
ACCDH956449DH956450
length5621,045
definitionDH956449|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A03, 5' end.DH956450|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,000,554 - 107,001,121)(107,137,740 - 107,138,787)
sequence
actttgcataagcattcattttctctattatttgaagtgcacaaataaac
catagggagatgtttgcatgcaagatttggctcaagggaaaggtgtataa
atatggatgcaatggtttcactcatatgatgtatatgttgtcttgatgac
atttcatagagctccacattggactgtgttctaagttggagaagtgaaaa
atatcaggttgttcaaaatatattttaacacaaatcaaaacacatacatt
attttcactttatgttgattgatttttgtggagaaattatattcctagat
ccaatcaaagacatgacaatgaaatgcagtggcagatactggtgtagcat
atggccacaaccccagccactaaaaaagatattaagagtaataataatat
aatttttatgcagatatagatctgaatattatgcaagtattctttgttca
tataaattttgaaatcactaagttaaaattcataaagattttatataaag
atacatgtaacccattagattttaaagtgtgttgtgagatgtgtatggtg
tgtgtgtgtgtg

gaattcttttcatttcaaatactgttaaaggagaggtaaaatgtatccag
tgatttcctggaccaaaagcatttgaaaaatctgacaagaaagggtgagc
gggtgtttctttttttgtttgtttttgttcacgtttgctatggactgaaa
tagtggacatgggatttcttcccaatgctcagggcaaccatttataaaga
agattttgttttgttttaatgaattgtttagtaatgcctcctatgtgttt
atactgagtgttctgagctgtattttatggtgctacagttgttcgtggtg
cattccttgttcctactccaaactcaagaatagctattgtgaggtaaatg
gaagtataatcctcaggaagcccctgtgataaagatgataatgatttaca
atgaccattgggaaaccaaatgctctaaaaccattcttccctaactctga
tttagcagagtgctttagcatttgaggcgaatccccacatttcgtgttct
gttttgtttttgcagctgcacacacagacacacacagacacacacacaca
tacacaaaagggacttaaatctagcattttgttgcatatttaataaaaag
atcttaagccataattgctgtagctgctgggtgccttatttctccaagaa
ttctctctgtgcatgcaataactttggttaaattattctggacttaaaag
gcagaagagtattgaaaatagtatggtttctgaagcatcatcgtaacaaa
ccaatttcaaaagattcggctgctgaacgttacttcatagtccctttgta
gatgagttgttcggatttaaagcaggaatcatgtgctgttatttgtgtgg
ccattagtctcacgaaaggaagagaacaataaatgagacgaagaacccat
tcttccaatgattgtcattgaactgattggtgcattagtaaacattcata
gtatgaagtctctctcgggcttcggcatagaaagtagttcaaaagaaaaa
aaatccagtttagacctgtggaacaaaacctggtacatttcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107000554_107001121
seq2: B6Ng01-164A03.b_45_612

seq1  GAATTCACTTTGCATAAGCATTCATTTTCTCTATTATTTGAAGTGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCATAAGCATTCATTTTCTCTATTATTTGAAGTGCACAA  50

seq1  ATAAACCATAGGGAGATGTTTGCATGCAAGATTTGGCTCAAGGGAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCATAGGGAGATGTTTGCATGCAAGATTTGGCTCAAGGGAAAGGT  100

seq1  GTATAAATATGGATGCAATGGTTTCACTCATATGATGTATATGTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATATGGATGCAATGGTTTCACTCATATGATGTATATGTTGTCTT  150

seq1  GATGACATTTCATAGAGCTCCACATTGGACTGTGTTCTAAGTTGGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTTCATAGAGCTCCACATTGGACTGTGTTCTAAGTTGGAGAAG  200

seq1  TGAAAAATATCAGGTTGTTCAAAATATATTTTAACACAAATCAAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATCAGGTTGTTCAAAATATATTTTAACACAAATCAAAACACA  250

seq1  TACATTATTTTCACTTTATGTTGATTGATTTTTGTGGAGAAATTATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATTTTCACTTTATGTTGATTGATTTTTGTGGAGAAATTATATTC  300

seq1  CTAGATCCAATCAAAGACATGACAATGAAATGCAGTGGCAGATACTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCAATCAAAGACATGACAATGAAATGCAGTGGCAGATACTGGTG  350

seq1  TAGCATATGGCCACAACCCCAGCCACTAAAAAAGATATTAAGAGTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATGGCCACAACCCCAGCCACTAAAAAAGATATTAAGAGTAATAA  400

seq1  TAATATAATTTTTATGCAGATATAGATCTGAATATTATGCAAGTATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATTTTTATGCAGATATAGATCTGAATATTATGCAAGTATTCTT  450

seq1  TGTTCATATAAATTTTGAAATCACTAAGTTAAAATTCATAAAGATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATATAAATTTTGAAATCACTAAGTTAAAATTCATAAAGATTTTAT  500

seq1  ATAAAGATACATGTAACCCATTAGATTTTAAAGTGTGTTGTGAGATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATACATGTAACCCATTAGATTTTAAAGTGTGTTGTGAGATGTGT  550

seq1  ATGGTGTGTGTGTGTGTG  568
      ||||||||||||||||||
seq2  ATGGTGTGTGTGTGTGTG  568


seq1: chr2_107137740_107138787
seq2: B6Ng01-164A03.g_67_1111 (reverse)

seq1  GGAGGAAATGTAACAAGTTTTGTT-CACAGGTCTTAAAACTGGATTTTTT  49
      |||||||||||| || |||||||| |||||||||  |||||||| |||||
seq2  GGAGGAAATGTACCAGGTTTTGTTCCACAGGTCT--AAACTGGA-TTTTT  47

seq1  TTTCTTTTGCACTACTTTCTATGCCGAAGCCCGAGAGAGACTTCATACTA  99
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAACTACTTTCTATGCCGAAGCCCGAGAGAGACTTCATACTA  97

seq1  TGAATGTTTACTAATGCACCAATCAGTTCAATGACAATCATTGGAAGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTACTAATGCACCAATCAGTTCAATGACAATCATTGGAAGAAT  147

seq1  GGGTTCTTCGTCTCATTTATTGTTCTCTTCCTTTCGTGAGACTAATGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTCGTCTCATTTATTGTTCTCTTCCTTTCGTGAGACTAATGGCC  197

seq1  ACACAAATAACAGCACATGATTCCTGCTTTAAAATCCGAACAACTCATCT  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACAAATAACAGCACATGATTCCTGCTTT-AAATCCGAACAACTCATCT  246

seq1  ACAAAGGGACTATGAAGTAACGTTCAGCAGCCGAATCTTTTGAAATTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGACTATGAAGTAACGTTCAGCAGCCGAATCTTTTGAAATTGGT  296

seq1  TTGTTACGATGATGCTTCAGAAACCATACTATTTTCAATACTCTTCTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACGATGATGCTTCAGAAACCATACTATTTTCAATACTCTTCTGCC  346

seq1  TTTTAAGTCCAGAATAATTTAACCAAAGTTATTGCATGCACAGAGAGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTCCAGAATAATTTAACCAAAGTTATTGCATGCACAGAGAGAAT  396

seq1  TCTTGGAGAAATAAGGCACCCAGCAGCTACAGCAATTATGGCTTAAGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGAAATAAGGCACCCAGCAGCTACAGCAATTATGGCTTAAGATC  446

seq1  TTTTTATTAAATATGCAACAAAATGCTAGATTTAAGTCCCTTTTGTGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAAATATGCAACAAAATGCTAGATTTAAGTCCCTTTTGTGTAT  496

seq1  GTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGCAGCTGCAAAAACAAAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGCAGCTGCAAAAACAAAACA  546

seq1  GAACACGAAATGTGGGGATTCGCCTCAAATGCTAAAGCACTCTGCTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGAAATGTGGGGATTCGCCTCAAATGCTAAAGCACTCTGCTAAAT  596

seq1  CAGAGTTAGGGAAGAATGGTTTTAGAGCATTTGGTTTCCCAATGGTCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGGGAAGAATGGTTTTAGAGCATTTGGTTTCCCAATGGTCATT  646

seq1  GTAAATCATTATCATCTTTATCACAGGGGCTTCCTGAGGATTATACTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCATTATCATCTTTATCACAGGGGCTTCCTGAGGATTATACTTCC  696

seq1  ATTTACCTCACAATAGCTATTCTTGAGTTTGGAGTAGGAACAAGGAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTCACAATAGCTATTCTTGAGTTTGGAGTAGGAACAAGGAATGC  746

seq1  ACCACGAACAACTGTAGCACCATAAAATACAGCTCAGAACACTCAGTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGAACAACTGTAGCACCATAAAATACAGCTCAGAACACTCAGTATA  796

seq1  AACACATAGGAGGCATTACTAAACAATTCATTAAAACAAAACAAAATCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAGGAGGCATTACTAAACAATTCATTAAAACAAAACAAAATCTT  846

seq1  CTTTATAAATGGTTGCCCTGAGCATTGGGAAGAAATCCCATGTCCACTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAATGGTTGCCCTGAGCATTGGGAAGAAATCCCATGTCCACTAT  896

seq1  TTCAGTCCATAGCAAACGTGAACAAAAACAAACAAAAAAAGAAACACCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCATAGCAAACGTGAACAAAAACAAACAAAAAAAGAAACACCCG  946

seq1  CTCACCCTTTCTTGTCAGATTTTTCAAATGCTTTTGGTCCAGGAAATCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTTTCTTGTCAGATTTTTCAAATGCTTTTGGTCCAGGAAATCAC  996

seq1  TGGATACATTTTACCTCTCCTTTAACAGTATTTGAAATGAAAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACATTTTACCTCTCCTTTAACAGTATTTGAAATGAAAAGAATTC  1045


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