BAC Information

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BAC

Clone NameB6Ng01-164C12
Chromosome2 (Build37)
Map Location 48,110,761 - 48,226,859
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C12.bB6Ng01-164C12.g
ACCDH956557DH956558
length1,0971,019
definitionDH956557|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C12, 5' end.DH956558|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,225,752 - 48,226,859)(48,110,761 - 48,111,801)
sequence
gaattctcctcagatatgtactatgatacatcatgaaattcagctaaagg
ggcctaagtatttctatttattgacacaaattgaatttgtattaatttta
tatttaacatcacttagacacaatttagtaaaatggcttatggtcttgaa
aaaactttacaattcatttcatgtgacattaccaattagatggtttttaa
catctttaattgtgtacttattaatgatagatgcagctcagctaaaagca
attataatattaaaggttctcctggtgatgaattatgcagaattatatga
gatattcctagaagaggttatagttaggactataggctaaaggatagtta
aagacagacagtctcacagttcagtctttgtatctgaaaaacgagcataa
acttctaatcatcaaaaccacaacctttttgtccctaccccaagcctgaa
tataaattctggaagtgggtaccagtaatctgaatttggacaagtcctct
atgtgatgctgatgttacttacaccatgaagacttctcttttaaagaacc
gtaataagggaagctactaatgatcaaatgaggccactatcaacagaact
aactcatggactttgtacagattgatgcaggtttggaggcttaggctttt
tttttttttttttttttttaagtgtgttcttaaacatgcaaaacattcca
gcatttaaacctcttttgcatataatgataacacagattcatcaaaaaat
tgattgaacctcttttcctcctgatgactgttgattctttaggatgatac
tcattctctagctagcagataagggactcgaggaaatgaagaggccaaga
gaacaaaaatgtatattgctggggtccagcagtgtttatggggaagcagt
gtttgagctgctgtgctggtgttttcatcatagctttcaggaaatgaacg
tgttttctctttatgctcaagaaacttggattaatgatttctttggcaca
gatgttaaagtgaagcatatgaaaacagcccagtatagattcaagtccac
aaataatttatgatctccctggttggtgaacttctatgatgatatca
gaattctcgcattattgtgaactattgtttgagtttctaaagaatcacct
tccacttatcttacctggctttaaaaaataaattgcagtgttggataaca
aaaataaagacaaaagaaaaatgtgtttttaagggaaaataatcagcata
tgtgaaaggattgatgactaatcactgatggccaccacttaacaactggg
atgcagaaagttatatttgtgtacctattcttttgtgtgattgtgggtct
tgaatgaaaatgggcaccataggttcacagggagttgcattatttgaaag
gattatgacctgtgagtagatgtggacttttggaggaaatgggtaactag
gggtggttttgaggtttcagaagctcaagtcaggcccagtggcttatttt
cttttcctgctgtctgcagattcagatatataacggactgcatgctgcct
tgcttcccaccatgatgatgatagacaaaacctctgaactgtaagccagc
cccaattaaatgcttttctttctaagatttgccatggtcatggtgtttct
tcacagcaataaaaatcctaagacaataatctatgggccattttttcaat
aagaaaaacggccattggtaacttcttgaactataatttcatccaaaccc
aaccatactttgaaccatgctcatattttgacaaggaagattccctgtgt
ggacccatcggtccagattgtttattttcttaattctaagtgttattgct
tatctgccaggtacttatccacttaggataatgtagattttattcctgac
tcaagtatcttctgctttcccacatttcacaatttctaccatcttattgt
ttaggcatttgtgtgtatctcctacagaactgcatgtacagattctattt
aatccctgccaatgtactgccaatgttagatactatttcttgtgatcagc
tgatcagaccttactgtctgccagtttcatagatagatcgagaactactg
gaaagcacccagtctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48225752_48226859
seq2: B6Ng01-164C12.b_45_1141 (reverse)

seq1  TGATATCATCATAGAAGATCAACCAACCAGGGGAGATCATAAATATATTT  50
      ||||||||||||||||| || |||||||| |||||||||||||| |||||
seq2  TGATATCATCATAGAAGTTC-ACCAACCA-GGGAGATCATAAAT-TATTT  47

seq1  GTGGACTTGGATTCTATACTGGGCTGGTTTTTCATATGCTTCACTTTAAC  100
      |||||||| || ||||||||||||||  ||||||||||||||||||||||
seq2  GTGGACTT-GAATCTATACTGGGCTG--TTTTCATATGCTTCACTTTAAC  94

seq1  ATCCTGTGCCAAAGAAAATCATTAATCCAAGTTTCTTGAGGCATAAAGGA  150
      || ||||||||||| |||||||||||||||||||||||| ||||||| ||
seq2  AT-CTGTGCCAAAG-AAATCATTAATCCAAGTTTCTTGA-GCATAAA-GA  140

seq1  GAAAACACGTTCATTTCCTGAAAGCTATGATGAAAACACCAGCACAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACGTTCATTTCCTGAAAGCTATGATGAAAACACCAGCACAGCAG  190

seq1  CTCAAACACTGCTTCCCCATAAACACTGCTGGACCCCAGCAATATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACTGCTTCCCCATAAACACTGCTGGACCCCAGCAATATACATT  240

seq1  TTTGTTCTCTTGGCCTCTTCATTTCCTCGAGTCCCTTATCTGCTAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCTTGGCCTCTTCATTTCCTCGAGTCCCTTATCTGCTAGCTAG  290

seq1  AGAATGAGTATCATCCTAAAGAATCAACAGTCATCAGGAGGAAAAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGTATCATCCTAAAGAATCAACAGTCATCAGGAGGAAAAGAGGT  340

seq1  TCAATCAATTTTTTGATGAATCTGTGTTATCATTATATGCAAAAGAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATTTTTTGATGAATCTGTGTTATCATTATATGCAAAAGAGGTT  390

seq1  TAAATGCTGGAATGTTTTGCATGTTTAAGAACACACTTAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTGGAATGTTTTGCATGTTTAAGAACACACTTAAAAAAAAAAAA  440

seq1  AAAAAAAAAAAGCCTAAGCCTCCAAACCTGCATCAATCTGTACAAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCCTAAGCCTCCAAACCTGCATCAATCTGTACAAAGTCC  490

seq1  ATGAGTTAGTTCTGTTGATAGTGGCCTCATTTGATCATTAGTAGCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAGTTCTGTTGATAGTGGCCTCATTTGATCATTAGTAGCTTCCC  540

seq1  TTATTACGGTTCTTTAAAAGAGAAGTCTTCATGGTGTAAGTAACATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACGGTTCTTTAAAAGAGAAGTCTTCATGGTGTAAGTAACATCAGC  590

seq1  ATCACATAGAGGACTTGTCCAAATTCAGATTACTGGTACCCACTTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAGAGGACTTGTCCAAATTCAGATTACTGGTACCCACTTCCAGA  640

seq1  ATTTATATTCAGGCTTGGGGTAGGGACAAAAAGGTTGTGGTTTTGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCAGGCTTGGGGTAGGGACAAAAAGGTTGTGGTTTTGATGAT  690

seq1  TAGAAGTTTATGCTCGTTTTTCAGATACAAAGACTGAACTGTGAGACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTATGCTCGTTTTTCAGATACAAAGACTGAACTGTGAGACTGT  740

seq1  CTGTCTTTAACTATCCTTTAGCCTATAGTCCTAACTATAACCTCTTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTAACTATCCTTTAGCCTATAGTCCTAACTATAACCTCTTCTAG  790

seq1  GAATATCTCATATAATTCTGCATAATTCATCACCAGGAGAACCTTTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTCATATAATTCTGCATAATTCATCACCAGGAGAACCTTTAATA  840

seq1  TTATAATTGCTTTTAGCTGAGCTGCATCTATCATTAATAAGTACACAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGCTTTTAGCTGAGCTGCATCTATCATTAATAAGTACACAATT  890

seq1  AAAGATGTTAAAAACCATCTAATTGGTAATGTCACATGAAATGAATTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTAAAAACCATCTAATTGGTAATGTCACATGAAATGAATTGTA  940

seq1  AAGTTTTCTCAAGACCATAAGCCATTTTACTAAATTGTGTCTAAGTGATG  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTCAAGACCATAAGCCATTTTACTAAATTGTGTCTAAGTGATG  990

seq1  TTAAATATAAAATTAATACAAATTCAATCTGTGTCAATAAATAGAAATAA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TTAAATATAAAATTAATACAAATTCAATTTGTGTCAATAAATAGAAATAC  1040

seq1  TTATGCCCCTTTAGCTGAATGAAATGATGTATGATAGTATTATATCTGAG  1100
      ||| ||||||||||||||||   ||||||||| ||||||  |||||||||
seq2  TTAGGCCCCTTTAGCTGAATTTCATGATGTATCATAGTA-CATATCTGAG  1089

seq1  GTGAATTC  1108
      | ||||||
seq2  GAGAATTC  1097

seq1: chr2_48110761_48111801
seq2: B6Ng01-164C12.g_67_1085

seq1  GAATTCTCTCATTATTGTGAACTATTGTTTGAGTTTATATAAAATCAGCT  50
      |||||||| ||||||||||||||||||||||||||| || | ||||| ||
seq2  GAATTCTCGCATTATTGTGAACTATTGTTTGAGTTTCTAAAGAATCACCT  50

seq1  TCCTTCAATCTTACATGGCTTTAAAAAATAGATTGCAGTGTTGGATAACA  100
      |||    ||||||| ||||||||||||||| |||||||||||||||||||
seq2  TCCACTTATCTTACCTGGCTTTAAAAAATAAATTGCAGTGTTGGATAACA  100

seq1  AAAATAAAGACAAAAGAAAAATGTGTTTTTAAGGGAAAATAATCAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGACAAAAGAAAAATGTGTTTTTAAGGGAAAATAATCAGCATA  150

seq1  TGTGAAAGGATTGATGACAAATCACTGATGGTCACCATAGAACAACTGGG  200
      |||||||||||||||||| |||||||||||| |||||   ||||||||||
seq2  TGTGAAAGGATTGATGACTAATCACTGATGGCCACCACTTAACAACTGGG  200

seq1  ATGCAGAAAGTTATATTTGTGTACCGATTCTTTAGTATGATTGTGGTAGC  250
      ||||||||||||||||||||||||| ||||||| || |||||||||   |
seq2  ATGCAGAAAGTTATATTTGTGTACCTATTCTTTTGTGTGATTGTGG-GTC  249

seq1  TTGAATGAAAATGGGCACCATAGGTTCACAGGGAGTTGCATTATTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAAAATGGGCACCATAGGTTCACAGGGAGTTGCATTATTTGAAA  299

seq1  GGATTAGGACATGTGAGTAGATGTGGACTTTTGGAGGAAATGGGTAACTA  350
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATTATGACCTGTGAGTAGATGTGGACTTTTGGAGGAAATGGGTAACTA  349

seq1  GGGGTGGTTTTGAGGTTTCAGAAGCTCAAGTCAGGCCCAGTGGCTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTTTTGAGGTTTCAGAAGCTCAAGTCAGGCCCAGTGGCTTATTT  399

seq1  TCTTTTCCTGCTGTCTGCAGATTCAGATATAGAACGGCCTGCATGCTGCC  450
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TCTTTTCCTGCTGTCTGCAGATTCAGATATATAACGGACTGCATGCTGCC  449

seq1  ATGCTTCCCACCATGATGATGATAGACAAAACCTCTGAACTGTAAGCCAG  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCACCATGATGATGATAGACAAAACCTCTGAACTGTAAGCCAG  499

seq1  CCCCAATTAAATGCTTTTCTTTCTAAGATTTGCCATGGTCATGGTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTAAATGCTTTTCTTTCTAAGATTTGCCATGGTCATGGTGTTTC  549

seq1  TTCACAGCAATAAAAATCCTAAGACAATAATCTATGGGCCATTTTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCAATAAAAATCCTAAGACAATAATCTATGGGCCATTTTTTCAA  599

seq1  TAAGAAAAACGGCCATTGGTAACTTCTTGAACTATAATTTCATCCAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAACGGCCATTGGTAACTTCTTGAACTATAATTTCATCCAAACC  649

seq1  CAACCATACTTTGAACCATGCTCATATTTTGACAAGGAAGATTCCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATACTTTGAACCATGCTCATATTTTGACAAGGAAGATTCCCTGTG  699

seq1  TGGACCCATCGGTCCAGATTGTTTTATTTTCTTAATTCTAAGTGTTATTG  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGACCCATCGGTCCAGATTG-TTTATTTTCTTAATTCTAAGTGTTATTG  748

seq1  CTTATCTGCCAGGTACTTATCCACTTAGGATAATGTAGATTTTATTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGCCAGGTACTTATCCACTTAGGATAATGTAGATTTTATTCCTG  798

seq1  ACTCAAGGTATCTTCTGCTTTCCCACATTTCCACAA-TTCTACCATCTTA  849
      |||||| ||||||||||||||||||||||| ||||| |||||||||||||
seq2  ACTCAA-GTATCTTCTGCTTTCCCACATTT-CACAATTTCTACCATCTTA  846

seq1  TTGTTTAGGCATTTGTGTCTAATTCCTACAAGAACTTCATTTACTGATTT  899
      |||||||||||||||||| ||  |||||| |||||| ||| ||| || ||
seq2  TTGTTTAGGCATTTGTGTGTATCTCCTAC-AGAACTGCATGTACAGA-TT  894

seq1  CTATTTAATCCCTGCCCAATGTAACTGCACAATTGTTAGATACTATTTTC  949
      |||||||||||||| ||||||| ||||| ||| |||||||||||| ||||
seq2  CTATTTAATCCCTG-CCAATGT-ACTGC-CAA-TGTTAGATACTA-TTTC  939

seq1  TTGTTGATACTGTCTGATCAAGACCTTTACTGTCTGCCAAGTTTTCATAG  999
      ||| |||| | | |||||| ||||| |||||||||||||   ||||||| 
seq2  TTG-TGAT-CAG-CTGATC-AGACC-TTACTGTCTGCCA--GTTTCATA-  981

seq1  GTTAGACAGAAGAACTACTGTAAAAGCAACCCCAGTCTATCA  1041
      | ||||  | ||||||||||  ||||||  ||||||||||||
seq2  GATAGATCG-AGAACTACTG-GAAAGCA--CCCAGTCTATCA  1019